PDB Chemical Component 4K6
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 4K6
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C9 |
C10 |
1.507 |
1.531 |
C9 |
C8 |
1.490 |
1.507 |
C10 |
N2 |
1.459 |
1.465 |
N2 |
C11 |
1.335 |
1.348 |
O |
C11 |
1.231 |
1.215 |
C11 |
C12 |
1.497 |
1.477 |
C8 |
N |
1.320 |
1.301 |
C8 |
N1 |
1.353 |
1.361 |
C17 |
C12 |
1.394 |
1.397 |
C17 |
C16 |
1.382 |
1.377 |
N |
C4 |
1.395 |
1.358 |
C12 |
C13 |
1.396 |
1.397 |
N1 |
C3 |
1.394 |
1.380 |
C16 |
C15 |
1.388 |
1.390 |
C13 |
C14 |
1.387 |
1.378 |
C4 |
C3 |
1.394 |
1.405 |
C4 |
C5 |
1.391 |
1.398 |
C15 |
C14 |
1.391 |
1.391 |
C15 |
N3 |
1.429 |
1.399 |
C3 |
C2 |
1.387 |
1.388 |
C18 |
N3 |
1.361 |
1.363 |
C18 |
N4 |
1.303 |
1.305 |
C5 |
C6 |
1.392 |
1.366 |
N3 |
C19 |
1.359 |
1.363 |
C2 |
C1 |
1.394 |
1.379 |
N4 |
N5 |
1.392 |
1.286 |
C6 |
C1 |
1.422 |
1.387 |
C6 |
C7 |
1.507 |
1.507 |
C19 |
N5 |
1.301 |
1.305 |
C1 |
C |
1.510 |
1.506 |
C17 |
H17 |
1.080 |
1.080 |
C16 |
H16 |
1.080 |
1.080 |
C19 |
H19 |
1.081 |
1.080 |
C18 |
H18 |
1.080 |
1.080 |
C14 |
H15 |
1.080 |
1.079 |
C13 |
H14 |
1.079 |
1.080 |
N2 |
H13 |
1.000 |
0.970 |
C10 |
H11 |
1.100 |
1.090 |
C10 |
H12 |
1.099 |
1.090 |
C9 |
H9 |
1.100 |
1.090 |
C9 |
H10 |
1.100 |
1.090 |
N1 |
H |
1.000 |
0.970 |
C2 |
H4 |
1.079 |
1.080 |
C5 |
H5 |
1.080 |
1.080 |
C7 |
H7 |
1.100 |
1.090 |
C7 |
H8 |
1.100 |
1.090 |
C7 |
H6 |
1.100 |
1.090 |
C |
H1 |
1.100 |
1.090 |
C |
H2 |
1.101 |
1.090 |
C |
H3 |
1.100 |
1.090 |
Bond Angles for 4K6
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C9 |
C10 |
H11 |
108.8 |
109.4 |
C9 |
C10 |
H12 |
108.7 |
109.5 |
C9 |
C8 |
N |
124.4 |
124.9 |
C9 |
C8 |
N1 |
122.6 |
125.0 |
C8 |
C9 |
H9 |
108.8 |
109.4 |
C8 |
C9 |
H10 |
108.8 |
109.5 |
C10 |
N2 |
H13 |
119.4 |
120.0 |
O |
C11 |
C12 |
120.7 |
120.0 |
C11 |
C12 |
C13 |
124.1 |
120.0 |
N1 |
C8 |
N |
112.9 |
110.1 |
C8 |
N |
C4 |
105.2 |
109.6 |
C8 |
N1 |
C3 |
107.1 |
107.4 |
C8 |
N1 |
H |
126.4 |
126.3 |
C17 |
C12 |
C13 |
118.6 |
119.9 |
C17 |
C16 |
C15 |
120.2 |
120.1 |
C16 |
C17 |
H17 |
119.6 |
120.1 |
C17 |
C16 |
H16 |
119.9 |
120.0 |
N |
C4 |
C5 |
130.7 |
133.6 |
C12 |
C13 |
C14 |
120.6 |
119.9 |
C12 |
C13 |
H14 |
119.7 |
120.1 |
N1 |
C3 |
C2 |
133.1 |
134.1 |
C3 |
N1 |
H |
126.4 |
126.4 |
C16 |
C15 |
C14 |
119.7 |
120.2 |
C16 |
C15 |
N3 |
120.0 |
119.9 |
C15 |
C16 |
H16 |
119.9 |
119.9 |
C13 |
C14 |
H15 |
120.0 |
120.0 |
C4 |
C5 |
C6 |
119.8 |
119.8 |
C4 |
C5 |
H5 |
120.1 |
120.1 |
N3 |
C15 |
C14 |
120.3 |
119.9 |
C15 |
C14 |
H15 |
120.0 |
119.9 |
C15 |
N3 |
C19 |
127.9 |
127.1 |
C3 |
C2 |
C1 |
119.1 |
119.7 |
C3 |
C2 |
H4 |
120.4 |
120.1 |
C5 |
C6 |
C1 |
120.1 |
120.7 |
C5 |
C6 |
C7 |
118.8 |
119.6 |
C6 |
C5 |
H5 |
120.1 |
120.1 |
N3 |
C19 |
N5 |
111.0 |
107.2 |
N3 |
C19 |
H19 |
124.5 |
126.5 |
C2 |
C1 |
C6 |
119.6 |
120.4 |
C2 |
C1 |
C |
119.6 |
119.7 |
C1 |
C2 |
H4 |
120.5 |
120.2 |
C7 |
C6 |
C1 |
121.1 |
119.6 |
C6 |
C1 |
C |
120.7 |
119.8 |
C6 |
C7 |
H7 |
109.5 |
109.5 |
C6 |
C7 |
H8 |
109.5 |
109.5 |
C6 |
C7 |
H6 |
109.5 |
109.4 |
N5 |
C19 |
H19 |
124.5 |
126.4 |
C1 |
C |
H1 |
109.5 |
109.5 |
C1 |
C |
H2 |
109.5 |
109.5 |
C1 |
C |
H3 |
109.5 |
109.5 |
H11 |
C10 |
H12 |
109.4 |
109.5 |
H9 |
C9 |
H10 |
109.5 |
109.5 |
H7 |
C7 |
H8 |
109.5 |
109.5 |
H7 |
C7 |
H6 |
109.5 |
109.5 |
H8 |
C7 |
H6 |
109.5 |
109.5 |
H1 |
C |
H2 |
109.5 |
109.5 |
H1 |
C |
H3 |
109.4 |
109.4 |
H2 |
C |
H3 |
109.4 |
109.5 |
Torsion Angles for 4K6
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C9 |
C10 |
N2 |
H13 |
352.2 |
0.0 |
H11 |
C10 |
C9 |
H12 |
240.9 |
120.0 |
C8 |
C9 |
C10 |
H11 |
56.8 |
60.0 |
C8 |
C9 |
C10 |
H12 |
175.9 |
300.0 |
N1 |
C8 |
C9 |
N |
175.8 |
180.3 |
C9 |
C8 |
N |
C4 |
174.9 |
179.8 |
C9 |
C8 |
N1 |
C3 |
184.9 |
180.0 |
C9 |
C8 |
N1 |
H |
4.8 |
0.0 |
H9 |
C9 |
C8 |
H10 |
119.2 |
120.0 |
O |
C11 |
C12 |
C13 |
216.0 |
360.0 |
C17 |
C12 |
C11 |
C13 |
172.1 |
180.3 |
C11 |
C12 |
C13 |
C14 |
169.2 |
179.7 |
C11 |
C12 |
C13 |
H14 |
349.2 |
0.1 |
C9 |
C8 |
N |
N1 |
176.1 |
180.3 |
N |
C8 |
C9 |
H9 |
2.6 |
185.0 |
N |
C8 |
C9 |
H10 |
243.4 |
65.0 |
N |
C8 |
N1 |
C3 |
1.1 |
0.3 |
N |
C8 |
N1 |
H |
181.1 |
180.3 |
C8 |
N |
C4 |
C5 |
178.7 |
180.0 |
C9 |
C8 |
N1 |
N |
183.8 |
179.7 |
N1 |
C8 |
C9 |
H9 |
178.4 |
5.3 |
N1 |
C8 |
C9 |
H10 |
59.2 |
245.3 |
N1 |
C8 |
N |
C4 |
358.7 |
359.6 |
C8 |
N1 |
C3 |
C2 |
183.8 |
180.0 |
C3 |
N1 |
C8 |
H |
180.0 |
180.0 |
C11 |
C12 |
C17 |
C13 |
187.4 |
179.7 |
C17 |
C12 |
C13 |
C14 |
357.2 |
359.4 |
C17 |
C12 |
C13 |
H14 |
177.2 |
179.8 |
C16 |
C17 |
C12 |
C13 |
2.9 |
0.3 |
C17 |
C16 |
C15 |
C14 |
358.3 |
0.0 |
C17 |
C16 |
C15 |
N3 |
176.6 |
180.1 |
C15 |
C16 |
C17 |
H16 |
180.0 |
180.0 |
N |
C4 |
C5 |
C6 |
184.0 |
180.0 |
N |
C4 |
C5 |
H5 |
4.0 |
359.9 |
C12 |
C13 |
C14 |
H15 |
180.5 |
180.3 |
C3 |
N1 |
C8 |
N |
1.1 |
0.3 |
C8 |
N1 |
C3 |
H |
180.0 |
180.0 |
N1 |
C3 |
C2 |
C1 |
174.6 |
180.0 |
N1 |
C3 |
C2 |
H4 |
354.6 |
360.0 |
C15 |
C16 |
C17 |
H17 |
179.4 |
180.0 |
C17 |
C16 |
C15 |
H16 |
180.0 |
180.0 |
N3 |
C15 |
C16 |
C14 |
178.4 |
180.1 |
C16 |
C15 |
C14 |
H15 |
181.8 |
180.0 |
C16 |
C15 |
N3 |
C19 |
224.3 |
180.1 |
C12 |
C13 |
C14 |
H14 |
180.0 |
180.4 |
C15 |
C14 |
C13 |
H15 |
180.0 |
180.3 |
C8 |
N |
C4 |
C3 |
0.9 |
0.4 |
C4 |
C3 |
N1 |
H |
179.6 |
180.0 |
C4 |
C3 |
C2 |
C1 |
359.4 |
0.0 |
C4 |
C3 |
C2 |
H4 |
179.4 |
180.0 |
C4 |
C5 |
C6 |
C1 |
1.3 |
0.7 |
C4 |
C5 |
C6 |
C7 |
181.8 |
180.0 |
C6 |
C5 |
C4 |
H5 |
180.0 |
180.1 |
C12 |
C13 |
C14 |
C15 |
0.5 |
0.6 |
C16 |
C15 |
C14 |
N3 |
178.4 |
180.1 |
C14 |
C15 |
C16 |
H16 |
178.3 |
180.0 |
C13 |
C14 |
C15 |
H15 |
180.0 |
179.7 |
C14 |
C15 |
N3 |
C19 |
42.7 |
0.1 |
C16 |
C15 |
N3 |
C14 |
181.6 |
179.9 |
N3 |
C15 |
C16 |
H16 |
356.7 |
0.1 |
N3 |
C15 |
C14 |
H15 |
3.4 |
359.9 |
C15 |
N3 |
C19 |
N5 |
176.8 |
179.9 |
C15 |
N3 |
C19 |
H19 |
356.8 |
359.8 |
C2 |
C3 |
N1 |
H |
3.8 |
360.0 |
C3 |
C2 |
C1 |
C6 |
3.6 |
0.2 |
C3 |
C2 |
C1 |
C |
187.3 |
180.0 |
C1 |
C2 |
C3 |
H4 |
180.0 |
180.0 |
C18 |
N3 |
C15 |
C14 |
218.7 |
179.7 |
C18 |
N3 |
C19 |
H19 |
180.1 |
180.2 |
C4 |
C5 |
C6 |
H5 |
180.0 |
179.9 |
C2 |
C1 |
C6 |
C5 |
356.0 |
359.4 |
C7 |
C6 |
C5 |
C1 |
180.5 |
179.3 |
C5 |
C6 |
C1 |
C |
172.3 |
179.7 |
C5 |
C6 |
C7 |
H7 |
89.8 |
90.0 |
C5 |
C6 |
C7 |
H8 |
209.7 |
210.0 |
C5 |
C6 |
C7 |
H6 |
329.8 |
330.0 |
C19 |
N3 |
C15 |
C14 |
42.7 |
0.1 |
N5 |
C19 |
N3 |
H19 |
180.0 |
180.0 |
C3 |
C2 |
C1 |
H4 |
180.0 |
180.0 |
C5 |
C6 |
C1 |
C2 |
356.0 |
359.4 |
C7 |
C6 |
C1 |
C2 |
175.5 |
180.1 |
C6 |
C1 |
C2 |
C |
176.3 |
180.3 |
C2 |
C1 |
C |
H1 |
88.1 |
90.0 |
C2 |
C1 |
C |
H2 |
208.2 |
210.0 |
C2 |
C1 |
C |
H3 |
328.1 |
330.0 |
N4 |
N5 |
C19 |
H19 |
179.8 |
180.0 |
C5 |
C6 |
C1 |
C7 |
180.5 |
179.3 |
C1 |
C6 |
C5 |
H5 |
181.3 |
180.8 |
C2 |
C1 |
C6 |
C |
183.8 |
179.7 |
C6 |
C1 |
C2 |
H4 |
183.6 |
180.3 |
C1 |
C6 |
C7 |
H7 |
270.3 |
269.3 |
C1 |
C6 |
C7 |
H8 |
30.2 |
29.3 |
C1 |
C6 |
C7 |
H6 |
150.3 |
149.3 |
C6 |
C1 |
C |
H1 |
271.9 |
269.7 |
C6 |
C1 |
C |
H2 |
31.9 |
29.7 |
C6 |
C1 |
C |
H3 |
151.9 |
149.7 |
C5 |
C6 |
C7 |
C1 |
179.5 |
180.7 |
C7 |
C6 |
C5 |
H5 |
1.8 |
0.1 |
C2 |
C1 |
C6 |
C7 |
175.5 |
180.1 |
C7 |
C6 |
C1 |
C |
351.8 |
0.3 |
H7 |
C7 |
C6 |
H8 |
240.0 |
240.0 |
H7 |
C7 |
C6 |
H6 |
120.0 |
120.0 |
H8 |
C7 |
C6 |
H6 |
240.0 |
240.0 |
N3 |
C19 |
N5 |
H19 |
180.0 |
180.0 |
C2 |
C1 |
C |
C6 |
176.2 |
180.3 |
C |
C1 |
C2 |
H4 |
7.3 |
360.0 |
H1 |
C |
C1 |
H2 |
240.0 |
240.0 |
H1 |
C |
C1 |
H3 |
120.0 |
120.0 |
H2 |
C |
C1 |
H3 |
240.0 |
240.0 |
H17 |
C17 |
C12 |
C13 |
182.8 |
180.3 |
H17 |
C17 |
C16 |
C15 |
179.4 |
180.0 |
H17 |
C17 |
C16 |
H16 |
359.4 |
0.0 |
C17 |
C16 |
H16 |
C15 |
180.0 |
180.0 |
H16 |
C16 |
C17 |
H17 |
359.4 |
0.0 |
H16 |
C16 |
C15 |
C14 |
178.3 |
180.0 |
H16 |
C16 |
C15 |
N3 |
356.7 |
0.1 |
N3 |
C19 |
H19 |
N5 |
180.0 |
180.1 |
C12 |
C13 |
H14 |
C14 |
180.0 |
179.6 |
H14 |
C13 |
C14 |
H15 |
0.5 |
359.9 |
C9 |
C10 |
H11 |
H12 |
118.7 |
240.0 |
H11 |
C10 |
N2 |
H13 |
231.7 |
120.0 |
C9 |
C10 |
H12 |
H11 |
241.3 |
119.9 |
H12 |
C10 |
N2 |
H13 |
112.6 |
240.0 |
H9 |
C9 |
C10 |
H11 |
177.2 |
180.0 |
H9 |
C9 |
C10 |
H12 |
296.3 |
60.0 |
H9 |
C9 |
C8 |
N |
2.6 |
185.0 |
H9 |
C9 |
C8 |
N1 |
178.4 |
5.3 |
C8 |
C9 |
H9 |
H10 |
241.2 |
240.0 |
H10 |
C9 |
C10 |
H11 |
296.4 |
300.0 |
H10 |
C9 |
C10 |
H12 |
55.5 |
180.0 |
H10 |
C9 |
C8 |
N |
243.4 |
65.0 |
H10 |
C9 |
C8 |
N1 |
59.2 |
245.3 |
C8 |
C9 |
H10 |
H9 |
118.8 |
120.0 |
H |
N1 |
C8 |
N |
181.1 |
180.3 |
C8 |
N1 |
H |
C3 |
180.0 |
179.9 |
H |
N1 |
C3 |
C2 |
3.8 |
360.0 |
C3 |
C2 |
H4 |
C1 |
180.0 |
180.0 |
H4 |
C2 |
C1 |
C6 |
183.6 |
180.3 |
H4 |
C2 |
C1 |
C |
7.3 |
360.0 |
C4 |
C5 |
H5 |
C6 |
180.0 |
180.1 |
H5 |
C5 |
C6 |
C1 |
181.3 |
180.8 |
H5 |
C5 |
C6 |
C7 |
1.8 |
0.1 |
H7 |
C7 |
C6 |
C1 |
270.3 |
269.3 |
C6 |
C7 |
H7 |
H8 |
120.0 |
120.0 |
C6 |
C7 |
H7 |
H6 |
240.0 |
240.0 |
H8 |
C7 |
H7 |
H6 |
120.0 |
120.0 |
H8 |
C7 |
C6 |
C1 |
30.2 |
29.3 |
C6 |
C7 |
H8 |
H7 |
240.0 |
240.0 |
C6 |
C7 |
H8 |
H6 |
120.0 |
120.0 |
H7 |
C7 |
H8 |
H6 |
240.0 |
240.0 |
H6 |
C7 |
C6 |
C1 |
150.3 |
149.3 |
C6 |
C7 |
H6 |
H7 |
120.0 |
120.0 |
C6 |
C7 |
H6 |
H8 |
240.0 |
240.0 |
H7 |
C7 |
H6 |
H8 |
120.0 |
120.0 |
C1 |
C |
H1 |
H2 |
120.0 |
120.0 |
C1 |
C |
H1 |
H3 |
240.0 |
240.0 |
H2 |
C |
H1 |
H3 |
119.9 |
120.0 |
C1 |
C |
H2 |
H1 |
239.9 |
240.0 |
C1 |
C |
H2 |
H3 |
120.0 |
120.0 |
H1 |
C |
H2 |
H3 |
240.1 |
240.0 |
C1 |
C |
H3 |
H1 |
120.1 |
120.0 |
C1 |
C |
H3 |
H2 |
240.0 |
240.0 |
H1 |
C |
H3 |
H2 |
119.9 |
120.0 |