Atom Nomenclature for 4JZ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 4JZ

Atom Name (V3) Atom Name (V2)
C4 C4
C7 C7
C6 C6
C9 C9
C13 C13
C20 C20
C21 C21
C8 C8
C18 C18
C16 C16
C19 C19
C1 C1
C2 C2
C3 C3
C5 C5
C10 C10
C11 C11
C12 C12
C14 C14
C15 C15
C17 C17
C22 C22
C23 C23
C24 C24
N25 N25
N26 N26
N27 N27
N28 N28
N29 N29
N30 N30
N31 N31
O32 O32
O33 O33
H4 H4
H4A H4A
H4B H4B
H7 H7
H6 H6
H9 H9
H13 H13
H8 H8
H1 H1
H1A H1A
H1B H1B
H2 H2
H2A H2A
H2B H2B
H3 H3
H3A H3A
H3B H3B
H5 H5
H10 H10
H11 H11
H12 H12
H14 H14
H15 H15
H15A H15A
HN25 HN25
HN28 HN28
HN29 HN29