PDB Chemical Component 4JY
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 4JY
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C34 |
C35 |
1.379 |
1.383 |
| C34 |
C33 |
1.376 |
1.383 |
| C35 |
C36 |
1.387 |
1.380 |
| C33 |
C32 |
1.382 |
1.380 |
| C36 |
C31 |
1.394 |
1.394 |
| C32 |
C31 |
1.389 |
1.394 |
| C31 |
C29 |
1.471 |
1.484 |
| C23 |
C22 |
1.447 |
1.529 |
| C29 |
C28 |
1.365 |
1.359 |
| C29 |
N30 |
1.378 |
1.349 |
| C22 |
O21 |
1.430 |
1.429 |
| C28 |
N27 |
1.362 |
1.367 |
| N30 |
C4 |
1.320 |
1.304 |
| O21 |
C8 |
1.378 |
1.359 |
| N27 |
C4 |
1.352 |
1.351 |
| C4 |
C2 |
1.499 |
1.507 |
| C9 |
C8 |
1.387 |
1.387 |
| C9 |
C3 |
1.394 |
1.383 |
| C8 |
C7 |
1.388 |
1.387 |
| N1 |
C2 |
1.459 |
1.466 |
| N1 |
C10 |
1.396 |
1.393 |
| C2 |
C3 |
1.528 |
1.507 |
| C3 |
C5 |
1.387 |
1.382 |
| C7 |
C6 |
1.388 |
1.386 |
| C15 |
C10 |
1.394 |
1.392 |
| C15 |
C14 |
1.386 |
1.377 |
| C10 |
C11 |
1.388 |
1.391 |
| C5 |
C6 |
1.384 |
1.391 |
| C5 |
F20 |
1.347 |
1.351 |
| C6 |
O17 |
1.379 |
1.359 |
| C14 |
C13 |
1.395 |
1.397 |
| C11 |
C12 |
1.380 |
1.377 |
| O17 |
C24 |
1.463 |
1.429 |
| C26 |
C24 |
1.493 |
1.530 |
| C24 |
C25 |
1.498 |
1.530 |
| C13 |
C12 |
1.391 |
1.396 |
| C13 |
C16 |
1.488 |
1.479 |
| N19 |
C16 |
1.288 |
1.303 |
| C16 |
N18 |
1.352 |
1.378 |
| C15 |
H44 |
1.080 |
1.080 |
| C22 |
H49 |
1.100 |
1.090 |
| C22 |
H48 |
1.100 |
1.090 |
| C23 |
H51 |
1.100 |
1.090 |
| C23 |
H52 |
1.100 |
1.090 |
| C23 |
H50 |
1.100 |
1.090 |
| C24 |
H53 |
1.100 |
1.090 |
| C11 |
H41 |
1.080 |
1.080 |
| C12 |
H42 |
1.080 |
1.080 |
| C34 |
H64 |
1.080 |
1.080 |
| C33 |
H63 |
1.080 |
1.079 |
| N1 |
H37 |
1.000 |
0.969 |
| C2 |
H38 |
1.100 |
1.090 |
| C7 |
H39 |
1.080 |
1.080 |
| C9 |
H40 |
1.080 |
1.079 |
| C14 |
H43 |
1.079 |
1.079 |
| N18 |
H45 |
1.000 |
0.970 |
| N19 |
H47 |
1.000 |
0.970 |
| C25 |
H56 |
1.100 |
1.089 |
| C25 |
H55 |
1.100 |
1.090 |
| C25 |
H54 |
1.100 |
1.090 |
| C26 |
H57 |
1.100 |
1.090 |
| C26 |
H59 |
1.100 |
1.090 |
| C26 |
H58 |
1.100 |
1.090 |
| N27 |
H60 |
1.000 |
0.970 |
| C28 |
H61 |
1.080 |
1.080 |
| C32 |
H62 |
1.080 |
1.080 |
| C35 |
H65 |
1.080 |
1.081 |
| C36 |
H66 |
1.080 |
1.081 |
| N18 |
H3 |
1.000 |
0.970 |
Bond Angles for 4JY
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C33 |
C34 |
C35 |
119.8 |
120.3 |
| C34 |
C35 |
C36 |
120.2 |
120.1 |
| C35 |
C34 |
H64 |
120.1 |
119.8 |
| C34 |
C35 |
H65 |
119.9 |
119.9 |
| C34 |
C33 |
C32 |
120.4 |
120.1 |
| C33 |
C34 |
H64 |
120.1 |
119.9 |
| C34 |
C33 |
H63 |
119.8 |
119.9 |
| C36 |
C35 |
H65 |
119.9 |
119.9 |
| C35 |
C36 |
H66 |
119.8 |
120.1 |
| C33 |
C32 |
C31 |
120.4 |
119.9 |
| C32 |
C33 |
H63 |
119.8 |
120.0 |
| C33 |
C32 |
H62 |
119.8 |
120.1 |
| C23 |
C22 |
O21 |
108.0 |
109.5 |
| C23 |
C22 |
H49 |
109.9 |
109.5 |
| C23 |
C22 |
H48 |
109.8 |
109.5 |
| C29 |
C28 |
H61 |
126.8 |
126.7 |
| C22 |
O21 |
C8 |
118.2 |
117.0 |
| O21 |
C22 |
H49 |
109.8 |
109.4 |
| O21 |
C22 |
H48 |
109.8 |
109.5 |
| C28 |
N27 |
H60 |
126.4 |
126.3 |
| C4 |
C2 |
H38 |
109.3 |
109.4 |
| C8 |
C7 |
H39 |
120.4 |
120.0 |
| C2 |
N1 |
C10 |
124.3 |
120.0 |
| N1 |
C2 |
C3 |
110.2 |
109.5 |
| C2 |
N1 |
H37 |
105.7 |
120.0 |
| N1 |
C2 |
H38 |
109.8 |
109.5 |
| C15 |
C10 |
N1 |
120.6 |
119.9 |
| C10 |
N1 |
H37 |
105.6 |
120.0 |
| C2 |
C3 |
C5 |
120.9 |
120.0 |
| C3 |
C2 |
H38 |
108.9 |
109.5 |
| C3 |
C5 |
C6 |
122.9 |
120.0 |
| C3 |
C5 |
F20 |
118.1 |
120.0 |
| C7 |
C6 |
O17 |
124.9 |
120.1 |
| C10 |
C15 |
C14 |
120.3 |
120.1 |
| C15 |
C10 |
C11 |
119.0 |
120.1 |
| C10 |
C15 |
H44 |
119.8 |
120.0 |
| C14 |
C15 |
H44 |
119.8 |
120.0 |
| C15 |
C14 |
H43 |
119.6 |
120.1 |
| C10 |
C11 |
H41 |
119.8 |
120.0 |
| C6 |
C5 |
F20 |
118.9 |
120.0 |
| C5 |
C6 |
O17 |
116.1 |
120.0 |
| C13 |
C12 |
C11 |
121.2 |
119.9 |
| C12 |
C11 |
H41 |
119.8 |
119.9 |
| C11 |
C12 |
H42 |
119.4 |
120.1 |
| O17 |
C24 |
C25 |
109.7 |
109.4 |
| O17 |
C24 |
H53 |
110.1 |
109.5 |
| C26 |
C24 |
H53 |
109.7 |
109.5 |
| C25 |
C24 |
H53 |
109.7 |
109.5 |
| C24 |
C25 |
H56 |
109.5 |
109.5 |
| C24 |
C25 |
H55 |
109.5 |
109.5 |
| C24 |
C25 |
H54 |
109.5 |
109.4 |
| C16 |
C13 |
C12 |
120.9 |
120.0 |
| C13 |
C12 |
H42 |
119.4 |
120.0 |
| C13 |
C16 |
N18 |
118.2 |
120.0 |
| C16 |
N18 |
H45 |
120.0 |
120.0 |
| C16 |
N18 |
H3 |
120.0 |
120.1 |
| H49 |
C22 |
H48 |
109.4 |
109.5 |
| H51 |
C23 |
H52 |
109.4 |
109.4 |
| H51 |
C23 |
H50 |
109.4 |
109.5 |
| H52 |
C23 |
H50 |
109.5 |
109.5 |
| H45 |
N18 |
H3 |
120.0 |
120.0 |
| H56 |
C25 |
H55 |
109.5 |
109.5 |
| H56 |
C25 |
H54 |
109.5 |
109.4 |
| H55 |
C25 |
H54 |
109.5 |
109.4 |
| H57 |
C26 |
H59 |
109.5 |
109.4 |
| H57 |
C26 |
H58 |
109.4 |
109.5 |
| H59 |
C26 |
H58 |
109.5 |
109.5 |
Torsion Angles for 4JY
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C35 |
C34 |
C33 |
C32 |
1.7 |
0.0 |
| C33 |
C34 |
C35 |
H64 |
180.0 |
179.7 |
| C35 |
C34 |
C33 |
H63 |
181.7 |
180.0 |
| C36 |
C35 |
C34 |
H65 |
180.0 |
179.9 |
| C34 |
C35 |
C36 |
H66 |
178.2 |
180.0 |
| C33 |
C34 |
C35 |
C36 |
2.0 |
359.9 |
| C35 |
C34 |
C33 |
H64 |
180.0 |
180.3 |
| C33 |
C34 |
C35 |
H65 |
182.0 |
180.0 |
| C34 |
C33 |
C32 |
C31 |
354.3 |
360.0 |
| C32 |
C33 |
C34 |
H63 |
180.0 |
180.0 |
| C34 |
C33 |
C32 |
H62 |
174.4 |
180.0 |
| C36 |
C35 |
C34 |
H64 |
182.0 |
180.3 |
| C34 |
C35 |
C36 |
H65 |
180.0 |
180.1 |
| C32 |
C33 |
C34 |
C35 |
1.7 |
0.0 |
| C32 |
C33 |
C34 |
H64 |
181.7 |
179.7 |
| C34 |
C33 |
C32 |
H63 |
180.0 |
180.0 |
| C34 |
C35 |
C36 |
C31 |
358.2 |
0.1 |
| C31 |
C32 |
C33 |
H63 |
174.3 |
180.0 |
| C33 |
C32 |
C31 |
H62 |
180.0 |
180.0 |
| C33 |
C32 |
C31 |
C29 |
184.0 |
180.0 |
| C31 |
C29 |
C28 |
H61 |
353.4 |
359.9 |
| C23 |
C22 |
O21 |
C8 |
178.7 |
180.0 |
| O21 |
C22 |
C23 |
H49 |
240.2 |
240.0 |
| O21 |
C22 |
C23 |
H48 |
119.8 |
120.0 |
| H49 |
C22 |
C23 |
H48 |
239.6 |
240.0 |
| C29 |
C28 |
N27 |
H60 |
178.1 |
180.0 |
| N30 |
C29 |
C28 |
H61 |
181.9 |
179.7 |
| C23 |
C22 |
O21 |
H49 |
119.8 |
120.0 |
| C23 |
C22 |
O21 |
H48 |
240.2 |
240.0 |
| H49 |
C22 |
O21 |
H48 |
120.4 |
120.0 |
| N30 |
C4 |
C2 |
H38 |
115.4 |
184.7 |
| C8 |
O21 |
C22 |
H49 |
58.9 |
60.0 |
| C8 |
O21 |
C22 |
H48 |
298.5 |
300.0 |
| O21 |
C8 |
C7 |
H39 |
350.6 |
0.1 |
| N27 |
C4 |
C2 |
H38 |
294.0 |
4.9 |
| C4 |
C2 |
N1 |
C10 |
154.5 |
155.0 |
| C4 |
C2 |
N1 |
H37 |
276.5 |
335.0 |
| N1 |
C2 |
C4 |
H38 |
238.0 |
240.0 |
| C4 |
C2 |
C3 |
C5 |
241.3 |
280.0 |
| C3 |
C2 |
C4 |
H38 |
117.4 |
120.0 |
| C22 |
O21 |
C8 |
C9 |
354.7 |
180.2 |
| C9 |
C8 |
C7 |
H39 |
176.7 |
179.8 |
| C9 |
C3 |
C2 |
H38 |
182.9 |
219.7 |
| C9 |
C3 |
C5 |
F20 |
183.3 |
180.3 |
| C22 |
O21 |
C8 |
C7 |
181.0 |
360.0 |
| C8 |
C7 |
C6 |
O17 |
188.1 |
180.1 |
| C4 |
C2 |
N1 |
H38 |
121.7 |
119.9 |
| C15 |
C10 |
N1 |
C2 |
178.9 |
180.0 |
| C10 |
N1 |
C2 |
H37 |
238.0 |
180.1 |
| N1 |
C2 |
C3 |
C5 |
119.5 |
160.0 |
| C3 |
C2 |
N1 |
H38 |
240.1 |
239.9 |
| C10 |
N1 |
C2 |
C3 |
272.8 |
275.0 |
| C2 |
N1 |
C10 |
H37 |
122.0 |
179.9 |
| C10 |
N1 |
C2 |
H38 |
32.7 |
35.1 |
| N1 |
C10 |
C15 |
C14 |
182.7 |
180.0 |
| C15 |
C10 |
N1 |
C11 |
178.2 |
179.8 |
| N1 |
C10 |
C15 |
H44 |
2.7 |
0.3 |
| N1 |
C10 |
C11 |
H41 |
356.9 |
359.8 |
| C4 |
C2 |
C3 |
H38 |
242.3 |
240.0 |
| C3 |
C2 |
N1 |
C10 |
272.8 |
275.0 |
| C3 |
C2 |
N1 |
H37 |
34.8 |
95.0 |
| N1 |
C2 |
C3 |
H38 |
120.5 |
120.1 |
| C2 |
C3 |
C5 |
C6 |
184.2 |
180.0 |
| C2 |
C3 |
C5 |
F20 |
7.0 |
0.0 |
| C5 |
C3 |
C2 |
H38 |
359.0 |
39.9 |
| C6 |
C5 |
C3 |
F20 |
177.2 |
180.0 |
| C3 |
C5 |
C6 |
O17 |
173.6 |
179.9 |
| C7 |
C6 |
C5 |
F20 |
174.6 |
180.0 |
| C5 |
C6 |
C7 |
O17 |
175.9 |
179.9 |
| C2 |
N1 |
C10 |
C15 |
178.9 |
180.0 |
| C15 |
C10 |
N1 |
H37 |
56.9 |
0.0 |
| C14 |
C15 |
C10 |
H44 |
180.0 |
179.7 |
| C10 |
C15 |
C14 |
H43 |
180.3 |
180.0 |
| C15 |
C10 |
C11 |
H41 |
178.7 |
180.0 |
| C14 |
C15 |
C10 |
N1 |
182.7 |
180.0 |
| C14 |
C15 |
C10 |
C11 |
0.9 |
359.8 |
| C10 |
C15 |
C14 |
H44 |
180.0 |
180.3 |
| C15 |
C10 |
C11 |
N1 |
181.8 |
180.2 |
| C11 |
C10 |
C15 |
C14 |
0.9 |
359.8 |
| C11 |
C10 |
C15 |
H44 |
180.9 |
180.0 |
| C12 |
C11 |
C10 |
H41 |
180.0 |
180.4 |
| C10 |
C11 |
C12 |
H42 |
180.6 |
179.5 |
| C3 |
C5 |
C6 |
F20 |
182.8 |
180.0 |
| C7 |
C6 |
C5 |
O17 |
183.8 |
180.1 |
| C3 |
C5 |
F20 |
C6 |
177.3 |
180.0 |
| F20 |
C5 |
C6 |
O17 |
350.8 |
359.9 |
| O17 |
C6 |
C5 |
F20 |
350.8 |
359.9 |
| C6 |
O17 |
C24 |
C25 |
147.1 |
85.1 |
| C6 |
O17 |
C24 |
H53 |
26.4 |
325.1 |
| C14 |
C13 |
C12 |
H42 |
180.5 |
180.3 |
| C14 |
C13 |
C16 |
N18 |
167.9 |
359.7 |
| C15 |
C10 |
C11 |
C12 |
358.7 |
0.5 |
| C10 |
C11 |
C12 |
H41 |
180.0 |
179.6 |
| C16 |
C13 |
C12 |
C11 |
178.9 |
180.0 |
| C13 |
C12 |
C11 |
H42 |
180.0 |
180.0 |
| C26 |
C24 |
O17 |
H53 |
241.8 |
239.9 |
| C25 |
C24 |
O17 |
H53 |
120.8 |
120.0 |
| O17 |
C24 |
C25 |
H56 |
180.0 |
300.0 |
| O17 |
C24 |
C25 |
H55 |
300.0 |
60.1 |
| O17 |
C24 |
C25 |
H54 |
60.0 |
180.0 |
| O17 |
C24 |
C26 |
H53 |
118.4 |
120.1 |
| C25 |
C24 |
C26 |
H53 |
237.7 |
240.0 |
| C26 |
C24 |
C25 |
H56 |
63.4 |
180.0 |
| C26 |
C24 |
C25 |
H55 |
183.4 |
300.1 |
| C26 |
C24 |
C25 |
H54 |
303.4 |
60.0 |
| O17 |
C24 |
C25 |
H53 |
238.9 |
240.0 |
| C26 |
C24 |
C25 |
H53 |
122.4 |
120.0 |
| H56 |
C25 |
C24 |
H55 |
240.0 |
239.9 |
| H56 |
C25 |
C24 |
H54 |
120.0 |
120.0 |
| H55 |
C25 |
C24 |
H54 |
240.0 |
240.1 |
| C13 |
C12 |
C11 |
H41 |
180.6 |
180.0 |
| C11 |
C12 |
C13 |
H42 |
180.0 |
180.0 |
| C12 |
C13 |
C16 |
N18 |
349.6 |
180.0 |
| C16 |
C13 |
C12 |
H42 |
358.9 |
360.0 |
| C13 |
C16 |
N18 |
H45 |
175.9 |
360.0 |
| C13 |
C16 |
N18 |
H3 |
355.9 |
180.0 |
| N19 |
C16 |
N18 |
H45 |
0.0 |
180.0 |
| N19 |
C16 |
N18 |
H3 |
180.0 |
0.0 |
| N18 |
C16 |
C13 |
C12 |
349.6 |
180.0 |
| H45 |
N18 |
C16 |
H3 |
180.0 |
180.0 |
| H44 |
C15 |
C10 |
N1 |
2.7 |
0.3 |
| C10 |
C15 |
H44 |
C14 |
180.0 |
179.7 |
| H44 |
C15 |
C10 |
C11 |
180.9 |
180.0 |
| H44 |
C15 |
C14 |
H43 |
0.2 |
359.7 |
| C23 |
C22 |
H49 |
O21 |
241.3 |
240.0 |
| C23 |
C22 |
H49 |
H48 |
120.7 |
120.0 |
| H49 |
C22 |
O21 |
C8 |
58.9 |
60.0 |
| O21 |
C22 |
H49 |
H48 |
239.4 |
240.0 |
| C23 |
C22 |
H48 |
O21 |
118.6 |
120.1 |
| C23 |
C22 |
H48 |
H49 |
239.3 |
240.0 |
| H48 |
C22 |
O21 |
C8 |
298.5 |
300.0 |
| O21 |
C22 |
H48 |
H49 |
120.7 |
119.9 |
| H51 |
C23 |
C22 |
O21 |
180.0 |
300.1 |
| H51 |
C23 |
C22 |
H49 |
299.8 |
60.0 |
| H51 |
C23 |
C22 |
H48 |
60.3 |
180.0 |
| H52 |
C23 |
H51 |
H50 |
120.0 |
120.0 |
| H52 |
C23 |
C22 |
O21 |
300.0 |
60.0 |
| H52 |
C23 |
C22 |
H49 |
59.8 |
180.0 |
| H52 |
C23 |
C22 |
H48 |
180.2 |
300.0 |
| H51 |
C23 |
H52 |
H50 |
240.0 |
240.0 |
| H50 |
C23 |
C22 |
O21 |
60.0 |
180.0 |
| H50 |
C23 |
C22 |
H49 |
179.8 |
299.9 |
| H50 |
C23 |
C22 |
H48 |
300.2 |
59.9 |
| H51 |
C23 |
H50 |
H52 |
119.9 |
119.9 |
| O17 |
C24 |
H53 |
C25 |
120.8 |
119.9 |
| H53 |
C24 |
C25 |
H56 |
301.0 |
59.9 |
| H53 |
C24 |
C25 |
H55 |
61.1 |
180.1 |
| H53 |
C24 |
C25 |
H54 |
181.0 |
300.0 |
| H41 |
C11 |
C12 |
H42 |
0.6 |
360.0 |
| C13 |
C12 |
H42 |
C11 |
180.0 |
180.0 |
| H42 |
C12 |
C11 |
H41 |
0.6 |
360.0 |
| C33 |
C34 |
H64 |
C35 |
180.0 |
180.3 |
| H64 |
C34 |
C35 |
C36 |
182.0 |
180.3 |
| H64 |
C34 |
C35 |
H65 |
2.0 |
0.3 |
| H64 |
C34 |
C33 |
C32 |
181.7 |
179.7 |
| H64 |
C34 |
C33 |
H63 |
1.7 |
359.7 |
| H63 |
C33 |
C34 |
C35 |
181.7 |
180.0 |
| C34 |
C33 |
H63 |
C32 |
180.0 |
180.0 |
| H63 |
C33 |
C34 |
H64 |
1.7 |
359.7 |
| H63 |
C33 |
C32 |
C31 |
174.3 |
180.0 |
| H63 |
C33 |
C32 |
H62 |
354.3 |
0.0 |
| C2 |
N1 |
H37 |
C10 |
226.7 |
180.1 |
| H37 |
N1 |
C2 |
C3 |
34.8 |
95.0 |
| H37 |
N1 |
C2 |
H38 |
154.8 |
215.0 |
| H38 |
C2 |
N1 |
C10 |
32.7 |
35.1 |
| N1 |
C2 |
H38 |
C3 |
239.3 |
239.9 |
| H38 |
C2 |
N1 |
H37 |
154.8 |
215.0 |
| H38 |
C2 |
C3 |
C5 |
359.0 |
39.9 |
| H39 |
C7 |
C6 |
O17 |
8.1 |
0.0 |
| H43 |
C14 |
C15 |
H44 |
0.2 |
359.7 |
| C16 |
N18 |
H45 |
H3 |
180.0 |
180.0 |
| H56 |
C25 |
C24 |
H53 |
301.0 |
59.9 |
| C24 |
C25 |
H56 |
H55 |
120.0 |
120.1 |
| C24 |
C25 |
H56 |
H54 |
240.0 |
240.1 |
| H55 |
C25 |
H56 |
H54 |
120.0 |
120.0 |
| H55 |
C25 |
C24 |
H53 |
61.1 |
180.1 |
| C24 |
C25 |
H55 |
H56 |
240.0 |
239.9 |
| C24 |
C25 |
H55 |
H54 |
120.0 |
119.9 |
| H56 |
C25 |
H55 |
H54 |
240.0 |
240.0 |
| H54 |
C25 |
C24 |
H53 |
181.0 |
300.0 |
| C24 |
C25 |
H54 |
H56 |
120.0 |
120.0 |
| C24 |
C25 |
H54 |
H55 |
240.0 |
240.0 |
| H56 |
C25 |
H54 |
H55 |
120.0 |
120.1 |
| H57 |
C26 |
C24 |
H53 |
61.6 |
180.0 |
| H59 |
C26 |
H57 |
H58 |
120.0 |
120.0 |
| H59 |
C26 |
C24 |
H53 |
181.6 |
300.0 |
| H57 |
C26 |
H59 |
H58 |
240.0 |
240.0 |
| H58 |
C26 |
C24 |
H53 |
301.6 |
60.0 |
| H57 |
C26 |
H58 |
H59 |
120.0 |
120.0 |
| H61 |
C28 |
N27 |
H60 |
358.1 |
0.1 |
| C33 |
C32 |
H62 |
C31 |
180.0 |
180.0 |
| H62 |
C32 |
C33 |
H63 |
354.3 |
0.0 |
| C34 |
C35 |
H65 |
C36 |
180.0 |
179.9 |
| H65 |
C35 |
C34 |
H64 |
2.0 |
0.3 |
| H65 |
C35 |
C36 |
H66 |
358.2 |
360.0 |
| H66 |
C36 |
C35 |
H65 |
358.2 |
360.0 |
| C16 |
N18 |
H3 |
H45 |
180.0 |
180.0 |