PDB Chemical Component 4JE
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 4JE
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C |
C1 |
1.516 |
1.530 |
| C1 |
C2 |
1.516 |
1.529 |
| C2 |
C3 |
1.511 |
1.507 |
| C3 |
C4 |
1.387 |
1.383 |
| C3 |
C8 |
1.387 |
1.382 |
| C4 |
C5 |
1.382 |
1.382 |
| C8 |
C7 |
1.383 |
1.383 |
| C5 |
C6 |
1.384 |
1.382 |
| C7 |
C6 |
1.385 |
1.383 |
| C6 |
S |
1.768 |
1.762 |
| O1 |
S |
1.433 |
1.421 |
| S |
O |
1.431 |
1.421 |
| S |
N |
1.601 |
1.656 |
| C1 |
H1 |
1.100 |
1.090 |
| C1 |
H2 |
1.100 |
1.091 |
| C5 |
H3 |
1.080 |
1.080 |
| C2 |
H4 |
1.100 |
1.091 |
| C2 |
H5 |
1.100 |
1.090 |
| C8 |
H6 |
1.080 |
1.080 |
| N |
H7 |
1.000 |
0.970 |
| N |
H8 |
1.000 |
0.969 |
| C4 |
H9 |
1.081 |
1.081 |
| C7 |
H10 |
1.080 |
1.079 |
| C |
H11 |
1.100 |
1.090 |
| C |
H12 |
1.100 |
1.089 |
| C |
H13 |
1.100 |
1.091 |
Bond Angles for 4JE
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C |
C1 |
H1 |
108.6 |
109.5 |
| C |
C1 |
H2 |
108.5 |
109.5 |
| C1 |
C2 |
C3 |
114.3 |
109.5 |
| C2 |
C1 |
H1 |
108.5 |
109.5 |
| C2 |
C1 |
H2 |
108.6 |
109.5 |
| C1 |
C2 |
H4 |
108.3 |
109.5 |
| C1 |
C2 |
H5 |
108.3 |
109.5 |
| C2 |
C3 |
C4 |
120.9 |
120.0 |
| C2 |
C3 |
C8 |
120.7 |
120.0 |
| C3 |
C2 |
H4 |
108.3 |
109.5 |
| C3 |
C2 |
H5 |
108.2 |
109.5 |
| C3 |
C4 |
H9 |
119.4 |
120.0 |
| C3 |
C8 |
C7 |
121.2 |
120.0 |
| C3 |
C8 |
H6 |
119.4 |
120.0 |
| C4 |
C5 |
H3 |
120.3 |
120.0 |
| C8 |
C7 |
C6 |
119.4 |
120.0 |
| C7 |
C8 |
H6 |
119.4 |
120.0 |
| C8 |
C7 |
H10 |
120.3 |
120.0 |
| C5 |
C6 |
S |
119.7 |
120.0 |
| C6 |
C5 |
H3 |
120.3 |
120.0 |
| O1 |
S |
O |
119.0 |
123.1 |
| O1 |
S |
N |
107.0 |
106.4 |
| O |
S |
N |
107.3 |
106.4 |
| S |
N |
H7 |
109.5 |
120.0 |
| S |
N |
H8 |
109.4 |
119.9 |
| H1 |
C1 |
H2 |
109.5 |
109.4 |
| H4 |
C2 |
H5 |
109.5 |
109.4 |
| H7 |
N |
H8 |
109.5 |
120.1 |
| H11 |
C |
H12 |
109.5 |
109.5 |
| H11 |
C |
H13 |
109.5 |
109.4 |
| H12 |
C |
H13 |
109.5 |
109.5 |
Torsion Angles for 4JE
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C |
H1 |
239.5 |
120.0 |
| C2 |
C1 |
C |
H2 |
120.5 |
240.0 |
| C |
C1 |
C2 |
H4 |
299.2 |
300.0 |
| C |
C1 |
C2 |
H5 |
57.8 |
60.0 |
| H1 |
C1 |
C |
H2 |
241.1 |
119.9 |
| C |
C1 |
C2 |
H1 |
120.5 |
240.0 |
| C |
C1 |
C2 |
H2 |
239.5 |
120.0 |
| C1 |
C2 |
C3 |
C4 |
309.5 |
90.0 |
| C1 |
C2 |
C3 |
C8 |
129.7 |
270.5 |
| C3 |
C2 |
C1 |
H4 |
239.3 |
240.0 |
| C3 |
C2 |
C1 |
H5 |
120.7 |
120.0 |
| H1 |
C1 |
C2 |
H2 |
118.9 |
240.0 |
| H4 |
C2 |
C1 |
H5 |
241.4 |
240.0 |
| C3 |
C2 |
C1 |
H1 |
58.0 |
300.0 |
| C3 |
C2 |
C1 |
H2 |
299.0 |
60.0 |
| C1 |
C2 |
C3 |
H4 |
120.7 |
120.0 |
| C1 |
C2 |
C3 |
H5 |
239.3 |
240.0 |
| C2 |
C3 |
C4 |
H9 |
0.4 |
0.0 |
| C2 |
C3 |
C8 |
C7 |
179.8 |
180.2 |
| C2 |
C3 |
C8 |
H6 |
359.8 |
359.8 |
| H4 |
C2 |
C3 |
H5 |
118.6 |
119.9 |
| C2 |
C3 |
C4 |
C8 |
180.3 |
180.6 |
| C4 |
C3 |
C2 |
H4 |
188.7 |
330.0 |
| C4 |
C3 |
C2 |
H5 |
70.2 |
210.0 |
| C4 |
C3 |
C8 |
C7 |
0.1 |
0.8 |
| C4 |
C3 |
C8 |
H6 |
180.0 |
180.4 |
| C3 |
C4 |
C5 |
H3 |
180.0 |
180.2 |
| C2 |
C3 |
C8 |
C4 |
179.7 |
179.4 |
| C8 |
C3 |
C2 |
H4 |
9.0 |
150.5 |
| C8 |
C3 |
C2 |
H5 |
250.4 |
30.6 |
| C3 |
C8 |
C7 |
C6 |
359.8 |
359.6 |
| C7 |
C8 |
C3 |
H6 |
180.0 |
180.4 |
| C3 |
C8 |
C7 |
H10 |
179.8 |
180.0 |
| C6 |
C5 |
C4 |
H3 |
180.0 |
179.8 |
| C3 |
C8 |
C7 |
H6 |
180.0 |
179.6 |
| C4 |
C5 |
C6 |
H3 |
180.0 |
180.2 |
| C8 |
C7 |
C6 |
C5 |
0.3 |
359.9 |
| C6 |
C7 |
C8 |
H6 |
179.8 |
180.0 |
| C8 |
C7 |
C6 |
H10 |
180.0 |
180.5 |
| C7 |
C6 |
C5 |
H3 |
179.8 |
180.1 |
| C8 |
C7 |
C6 |
S |
180.9 |
179.9 |
| S |
C6 |
C5 |
H3 |
359.3 |
0.1 |
| C6 |
S |
N |
H7 |
180.0 |
240.0 |
| C6 |
S |
N |
H8 |
300.0 |
60.0 |
| C5 |
C6 |
S |
O1 |
25.9 |
336.4 |
| O |
S |
O1 |
N |
121.7 |
237.0 |
| O1 |
S |
N |
H7 |
64.7 |
353.6 |
| O1 |
S |
N |
H8 |
184.6 |
173.5 |
| C5 |
C6 |
S |
O |
154.8 |
203.5 |
| O1 |
S |
O |
N |
238.4 |
123.0 |
| O |
S |
N |
H7 |
295.8 |
126.5 |
| O |
S |
N |
H8 |
55.8 |
306.4 |
| C5 |
C6 |
S |
N |
270.6 |
90.0 |
| O1 |
S |
N |
O |
128.8 |
227.1 |
| H7 |
N |
S |
H8 |
240.0 |
180.1 |
| C |
C1 |
H1 |
H2 |
118.3 |
240.1 |
| H1 |
C1 |
C2 |
C3 |
58.0 |
300.0 |
| C2 |
C1 |
H1 |
H2 |
241.6 |
120.0 |
| H1 |
C1 |
C2 |
H4 |
178.7 |
60.0 |
| H1 |
C1 |
C2 |
H5 |
297.3 |
180.0 |
| C |
C1 |
H2 |
H1 |
241.6 |
120.0 |
| H2 |
C1 |
C2 |
C3 |
299.0 |
60.0 |
| C2 |
C1 |
H2 |
H1 |
118.3 |
240.0 |
| H2 |
C1 |
C2 |
H4 |
59.8 |
180.0 |
| H2 |
C1 |
C2 |
H5 |
178.3 |
300.0 |
| H3 |
C5 |
C6 |
S |
359.3 |
0.1 |
| C1 |
C2 |
H4 |
C3 |
235.6 |
240.0 |
| H4 |
C2 |
C1 |
H1 |
178.7 |
60.0 |
| H4 |
C2 |
C1 |
H2 |
59.8 |
180.0 |
| C1 |
C2 |
H4 |
H5 |
117.8 |
120.0 |
| H4 |
C2 |
C3 |
C4 |
188.7 |
330.0 |
| H4 |
C2 |
C3 |
C8 |
9.0 |
150.5 |
| C3 |
C2 |
H4 |
H5 |
242.2 |
240.0 |
| C1 |
C2 |
H5 |
C3 |
124.4 |
120.1 |
| H5 |
C2 |
C1 |
H1 |
297.3 |
180.0 |
| H5 |
C2 |
C1 |
H2 |
178.3 |
300.0 |
| C1 |
C2 |
H5 |
H4 |
242.2 |
240.0 |
| H5 |
C2 |
C3 |
C4 |
70.2 |
210.0 |
| H5 |
C2 |
C3 |
C8 |
250.4 |
30.6 |
| C3 |
C2 |
H5 |
H4 |
117.8 |
120.0 |
| C3 |
C8 |
H6 |
C7 |
180.0 |
180.4 |
| H6 |
C8 |
C7 |
C6 |
179.8 |
180.0 |
| H6 |
C8 |
C7 |
H10 |
359.8 |
0.5 |
| S |
N |
H7 |
H8 |
120.0 |
179.9 |
| S |
N |
H8 |
H7 |
240.0 |
180.1 |
| H9 |
C4 |
C5 |
H3 |
360.0 |
0.2 |
| C8 |
C7 |
H10 |
C6 |
180.0 |
179.5 |
| H10 |
C7 |
C8 |
H6 |
359.8 |
0.5 |
| H11 |
C |
C1 |
H1 |
300.5 |
299.9 |
| H11 |
C |
C1 |
H2 |
59.5 |
180.0 |
| H12 |
C |
H11 |
H13 |
120.0 |
120.0 |
| H12 |
C |
C1 |
H1 |
60.6 |
60.0 |
| H12 |
C |
C1 |
H2 |
179.5 |
300.0 |
| H11 |
C |
H12 |
H13 |
240.0 |
240.0 |
| H13 |
C |
C1 |
H1 |
180.5 |
180.0 |
| H13 |
C |
C1 |
H2 |
299.5 |
60.0 |
| H11 |
C |
H13 |
H12 |
120.0 |
120.0 |