PDB Chemical Component 4HD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 4HD

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O1 C1 1.250 1.342
O2 C1 1.249 1.208
C1 C2 1.510 1.507
C2 C3 1.524 1.530
C3 C4 1.524 1.530
C4 C5 1.510 1.507
C4 O3 1.433 1.429
C5 C6 1.330 1.328
C6 C7 1.460 1.471
C7 C8 1.330 1.328
C8 C9 1.509 1.507
C9 C10 1.510 1.507
C10 C11 1.329 1.310
C11 C12 1.510 1.507
C12 C13 1.510 1.507
C13 C14 1.330 1.310
C14 C15 1.510 1.507
C15 C16 1.510 1.507
C16 C17 1.330 1.310
C17 C18 1.510 1.507
C18 C19 1.510 1.507
C19 C20 1.330 1.310
C20 C21 1.510 1.507
C21 C22 1.513 1.530
O1 H1 0.950 0.967
C2 H2C1 1.100 1.090
C2 H2C2 1.100 1.090
C3 H3C1 1.100 1.091
C3 H3C2 1.100 1.090
C4 H4 1.100 1.090
C5 H5 1.080 1.080
O3 H3 0.950 0.967
C6 H6 1.080 1.080
C7 H7 1.080 1.080
C8 H8 1.080 1.080
C9 H9C1 1.100 1.090
C9 H9C2 1.100 1.090
C10 H10 1.080 1.080
C11 H11 1.080 1.079
C12 H121 1.100 1.091
C12 H122 1.100 1.090
C13 H13 1.080 1.080
C14 H14 1.080 1.080
C15 H151 1.100 1.089
C15 H152 1.100 1.090
C16 H16 1.080 1.080
C17 H17 1.080 1.079
C18 H181 1.099 1.090
C18 H182 1.100 1.090
C19 H19 1.080 1.080
C20 H20 1.080 1.080
C21 H211 1.100 1.089
C21 H212 1.100 1.091
C22 H221 1.100 1.091
C22 H222 1.100 1.090
C22 H223 1.100 1.090

Bond Angles for 4HD

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1 C1 O2 123.0 120.0
O1 C1 C2 118.5 120.0
C1 O1 H1 109.5 117.0
O2 C1 C2 118.5 119.9
C1 C2 C3 109.5 109.5
C1 C2 H2C1 109.5 109.5
C1 C2 H2C2 109.5 109.5
C2 C3 C4 111.0 109.5
C3 C2 H2C1 109.5 109.5
C3 C2 H2C2 109.5 109.4
C2 C3 H3C1 109.0 109.4
C2 C3 H3C2 108.6 109.5
C3 C4 C5 109.5 109.5
C3 C4 O3 109.4 109.4
C4 C3 H3C1 108.9 109.4
C4 C3 H3C2 108.6 109.5
C3 C4 H4 109.5 109.5
C5 C4 O3 109.5 109.5
C4 C5 C6 120.0 120.0
C5 C4 H4 109.4 109.5
C4 C5 H5 120.0 120.0
O3 C4 H4 109.5 109.4
C4 O3 H3 109.5 114.0
C5 C6 C7 120.0 120.0
C6 C5 H5 120.0 120.0
C5 C6 H6 120.0 120.0
C6 C7 C8 120.0 120.0
C7 C6 H6 120.0 120.0
C6 C7 H7 120.0 120.0
C7 C8 C9 120.0 120.0
C8 C7 H7 120.0 120.0
C7 C8 H8 120.0 120.0
C8 C9 C10 109.5 109.5
C9 C8 H8 120.0 120.0
C8 C9 H9C1 109.5 109.5
C8 C9 H9C2 109.5 109.5
C9 C10 C11 120.0 120.0
C10 C9 H9C1 109.5 109.4
C10 C9 H9C2 109.4 109.4
C9 C10 H10 120.0 120.0
C10 C11 C12 120.0 120.0
C11 C10 H10 120.0 120.0
C10 C11 H11 120.0 120.0
C11 C12 C13 109.4 109.5
C12 C11 H11 120.0 120.0
C11 C12 H121 109.5 109.5
C11 C12 H122 109.5 109.5
C12 C13 C14 120.0 120.0
C13 C12 H121 109.5 109.4
C13 C12 H122 109.5 109.5
C12 C13 H13 120.0 120.0
C13 C14 C15 120.0 120.0
C14 C13 H13 120.0 120.0
C13 C14 H14 120.0 119.9
C14 C15 C16 109.5 109.5
C15 C14 H14 120.0 120.0
C14 C15 H151 109.5 109.4
C14 C15 H152 109.5 109.4
C15 C16 C17 120.0 120.0
C16 C15 H151 109.5 109.5
C16 C15 H152 109.5 109.5
C15 C16 H16 120.0 120.0
C16 C17 C18 120.0 120.0
C17 C16 H16 120.0 119.9
C16 C17 H17 120.0 120.0
C17 C18 C19 109.5 109.5
C18 C17 H17 120.0 120.0
C17 C18 H181 109.5 109.4
C17 C18 H182 109.5 109.5
C18 C19 C20 120.0 120.0
C19 C18 H181 109.5 109.5
C19 C18 H182 109.5 109.5
C18 C19 H19 120.0 120.0
C19 C20 C21 120.0 120.0
C20 C19 H19 120.0 120.0
C19 C20 H20 120.0 120.0
C20 C21 C22 109.5 109.5
C21 C20 H20 120.0 120.0
C20 C21 H211 109.5 109.5
C20 C21 H212 109.4 109.4
C22 C21 H211 109.4 109.5
C22 C21 H212 109.5 109.4
C21 C22 H221 109.5 109.4
C21 C22 H222 109.5 109.5
C21 C22 H223 109.5 109.5
H2C1 C2 H2C2 109.5 109.5
H3C1 C3 H3C2 110.7 109.5
H9C1 C9 H9C2 109.5 109.5
H121 C12 H122 109.4 109.5
H151 C15 H152 109.5 109.5
H181 C18 H182 109.5 109.5
H211 C21 H212 109.5 109.5
H221 C22 H222 109.5 109.5
H221 C22 H223 109.4 109.5
H222 C22 H223 109.5 109.5

Torsion Angles for 4HD

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2 C1 O1 C2 180.0 179.9
O1 C1 C2 C3 109.0 180.0
O1 C1 C2 H2C1 228.9 300.0
O1 C1 C2 H2C2 348.9 60.0
O1 C1 O2 C2 180.0 180.1
O2 C1 O1 H1 360.0 359.9
O2 C1 C2 C3 289.0 0.0
O2 C1 C2 H2C1 49.0 120.1
O2 C1 C2 H2C2 169.0 240.0
O1 C1 C2 O2 180.0 179.9
C2 C1 O1 H1 180.0 179.9
C1 C2 C3 C4 115.5 180.0
C3 C2 C1 H2C1 240.0 240.0
C3 C2 C1 H2C2 120.0 120.0
C1 C2 C3 H3C1 235.4 300.0
C1 C2 C3 H3C2 356.1 60.0
H2C1 C2 C1 H2C2 240.0 240.0
C1 C2 C3 H2C1 120.0 120.0
C1 C2 C3 H2C2 240.0 240.0
C2 C3 C4 C5 31.4 175.0
C2 C3 C4 O3 151.4 295.0
C4 C3 C2 H3C1 240.0 240.1
C4 C3 C2 H3C2 119.4 120.1
C2 C3 C4 H4 271.4 55.0
H2C1 C2 C3 H2C2 120.0 119.9
H3C1 C3 C2 H3C2 239.3 240.0
C4 C3 C2 H2C1 355.5 60.0
C4 C3 C2 H2C2 235.5 300.1
C2 C3 C4 H3C1 120.0 119.9
C2 C3 C4 H3C2 240.6 240.0
C5 C4 C3 O3 240.0 240.0
C3 C4 C5 C6 13.1 125.0
C5 C4 C3 H4 120.0 120.1
C3 C4 C5 H5 193.1 304.9
O3 C4 C3 H4 240.0 240.0
C3 C4 O3 H3 85.4 300.0
H3C1 C3 C4 H3C2 120.6 120.0
C3 C4 C5 O3 120.0 120.0
C5 C4 C3 H3C1 271.4 55.1
C5 C4 C3 H3C2 150.8 295.0
C3 C4 C5 H4 240.0 239.9
O3 C4 C5 H4 120.0 120.0
C5 C4 O3 H3 205.4 60.0
C4 C5 C6 C7 180.0 180.0
C6 C5 C4 H5 180.0 180.0
C4 C5 C6 H6 0.0 360.0
C3 C4 O3 C5 240.0 240.0
O3 C4 C3 H3C1 31.4 175.0
O3 C4 C3 H3C2 270.8 55.0
C3 C4 O3 H4 120.0 120.0
O3 C4 C5 C6 253.1 5.0
C5 C4 O3 H4 240.0 240.0
O3 C4 C5 H5 73.1 185.0
C6 C5 C4 O3 253.1 5.0
C6 C5 C4 H4 133.1 245.0
C4 C5 C6 H5 180.0 180.0
C5 C6 C7 C8 205.8 175.6
C7 C6 C5 H6 180.0 180.0
C5 C6 C7 H7 25.8 355.5
C7 C6 C5 H5 360.0 0.0
C5 C6 C7 H6 180.0 180.0
C6 C7 C8 C9 0.0 6.6
C8 C7 C6 H7 180.0 180.0
C6 C7 C8 H8 180.0 186.6
C8 C7 C6 H6 25.8 355.6
C6 C7 C8 H7 180.0 180.0
C7 C8 C9 C10 251.3 125.4
C9 C8 C7 H8 180.0 180.0
C7 C8 C9 H9C1 11.3 245.4
C7 C8 C9 H9C2 131.3 5.5
C9 C8 C7 H7 180.0 186.6
C7 C8 C9 H8 180.0 180.0
C8 C9 C10 C11 202.4 127.8
C10 C9 C8 H9C1 240.0 240.0
C10 C9 C8 H9C2 120.0 120.0
C8 C9 C10 H10 22.4 307.8
H9C1 C9 C8 H9C2 240.0 239.9
C10 C9 C8 H8 71.3 305.4
C8 C9 C10 H9C1 120.0 120.0
C8 C9 C10 H9C2 240.0 240.0
C9 C10 C11 C12 360.0 6.9
C11 C10 C9 H10 180.0 180.0
C9 C10 C11 H11 180.0 186.9
H9C1 C9 C10 H9C2 120.0 120.0
C11 C10 C9 H9C1 82.4 7.8
C11 C10 C9 H9C2 322.4 247.8
C9 C10 C11 H10 180.0 180.0
C10 C11 C12 C13 116.7 126.7
C12 C11 C10 H11 180.0 180.0
C10 C11 C12 H121 236.7 246.6
C10 C11 C12 H122 356.6 6.7
C12 C11 C10 H10 180.0 186.9
C10 C11 C12 H11 180.0 180.0
C11 C12 C13 C14 240.9 127.1
C13 C12 C11 H121 240.0 240.0
C13 C12 C11 H122 120.0 120.0
C11 C12 C13 H13 60.9 307.1
H121 C12 C11 H122 240.1 240.0
C13 C12 C11 H11 296.6 306.7
C11 C12 C13 H121 120.0 120.0
C11 C12 C13 H122 240.0 240.0
C12 C13 C14 C15 360.0 7.5
C14 C13 C12 H13 180.0 180.0
C12 C13 C14 H14 180.0 187.6
H121 C12 C13 H122 120.0 120.0
C14 C13 C12 H121 120.9 7.2
C14 C13 C12 H122 1.0 247.1
C12 C13 C14 H13 180.0 180.0
C13 C14 C15 C16 157.2 127.1
C15 C14 C13 H14 180.0 180.0
C13 C14 C15 H151 277.2 247.1
C13 C14 C15 H152 37.2 7.1
C15 C14 C13 H13 180.0 187.5
C13 C14 C15 H14 180.0 180.0
C14 C15 C16 C17 114.7 126.6
C16 C15 C14 H151 240.0 240.0
C16 C15 C14 H152 120.0 120.0
C14 C15 C16 H16 294.7 306.6
H151 C15 C14 H152 240.0 240.0
C16 C15 C14 H14 337.2 307.1
C14 C15 C16 H151 120.0 120.0
C14 C15 C16 H152 240.0 240.0
C15 C16 C17 C18 360.0 6.9
C17 C16 C15 H16 180.0 180.0
C15 C16 C17 H17 180.0 186.9
H151 C15 C16 H152 120.0 120.1
C17 C16 C15 H151 354.7 6.7
C17 C16 C15 H152 234.7 246.6
C15 C16 C17 H16 180.0 180.0
C16 C17 C18 C19 151.7 127.8
C18 C17 C16 H17 180.0 180.1
C16 C17 C18 H181 271.7 247.8
C16 C17 C18 H182 31.7 7.7
C18 C17 C16 H16 180.0 186.9
C16 C17 C18 H17 180.0 179.9
C17 C18 C19 C20 182.2 123.9
C19 C18 C17 H181 240.0 240.0
C19 C18 C17 H182 120.0 120.0
C17 C18 C19 H19 2.1 303.9
H181 C18 C17 H182 240.0 240.0
C19 C18 C17 H17 331.7 307.8
C17 C18 C19 H181 120.0 120.0
C17 C18 C19 H182 240.0 240.0
C18 C19 C20 C21 0.1 352.0
C20 C19 C18 H19 180.0 180.0
C18 C19 C20 H20 180.1 172.0
H181 C18 C19 H182 120.0 120.0
C20 C19 C18 H181 62.1 3.9
C20 C19 C18 H182 302.2 243.9
C18 C19 C20 H19 180.0 180.0
C19 C20 C21 C22 218.0 119.7
C21 C20 C19 H20 180.0 179.9
C19 C20 C21 H211 338.0 239.7
C19 C20 C21 H212 98.0 359.7
C21 C20 C19 H19 180.1 172.0
C19 C20 C21 H20 180.0 180.1
C22 C21 C20 H211 240.0 239.9
C22 C21 C20 H212 120.0 119.9
C20 C21 C22 H221 183.1 180.0
C20 C21 C22 H222 303.1 300.0
C20 C21 C22 H223 63.1 60.0
H211 C21 C20 H212 240.0 240.0
C22 C21 C20 H20 38.0 299.6
C20 C21 C22 H211 120.0 120.1
C20 C21 C22 H212 240.0 240.1
H211 C21 C22 H212 120.0 120.0
H221 C22 C21 H222 240.0 240.0
H221 C22 C21 H223 120.0 120.0
H222 C22 C21 H223 240.0 240.0
H1 O1 C1 O2 360.0 359.9
H1 O1 C1 C2 180.0 179.9
C1 C2 H2C1 C3 240.0 240.0
C1 C2 H2C1 H2C2 120.0 120.0
H2C1 C2 C3 C4 355.5 60.0
C3 C2 H2C1 H2C2 240.0 240.1
H2C1 C2 C3 H3C1 115.5 179.9
H2C1 C2 C3 H3C2 236.1 300.0
C1 C2 H2C2 C3 120.0 120.0
C1 C2 H2C2 H2C1 240.0 240.0
H2C2 C2 C3 C4 235.5 300.1
C3 C2 H2C2 H2C1 120.0 120.0
H2C2 C2 C3 H3C1 355.5 60.0
H2C2 C2 C3 H3C2 116.1 180.0
C2 C3 H3C1 C4 238.8 240.0
H3C1 C3 C2 H2C1 115.5 179.9
H3C1 C3 C2 H2C2 355.5 60.0
C2 C3 H3C1 H3C2 119.4 120.0
H3C1 C3 C4 C5 271.4 55.1
H3C1 C3 C4 O3 31.4 175.0
C4 C3 H3C1 H3C2 240.7 240.0
H3C1 C3 C4 H4 151.4 295.0
C2 C3 H3C2 C4 120.8 120.0
H3C2 C3 C2 H2C1 236.1 300.0
H3C2 C3 C2 H2C2 116.1 180.0
C2 C3 H3C2 H3C1 240.4 240.0
H3C2 C3 C4 C5 150.8 295.0
H3C2 C3 C4 O3 270.8 55.0
C4 C3 H3C2 H3C1 119.5 120.0
H3C2 C3 C4 H4 30.8 175.0
C3 C4 H4 C5 120.0 120.0
C3 C4 H4 O3 240.0 240.0
H4 C4 C3 H3C1 151.4 295.0
H4 C4 C3 H3C2 30.8 175.0
C5 C4 H4 O3 120.0 120.0
H4 C4 C5 C6 133.1 245.0
H4 C4 C5 H5 313.1 65.0
H4 C4 O3 H3 325.4 180.0
H5 C5 C4 O3 73.1 185.0
C4 C5 H5 C6 180.0 180.0
H5 C5 C4 H4 313.1 65.0
H5 C5 C6 C7 360.0 0.0
H5 C5 C6 H6 180.0 180.0
H3 O3 C4 H4 325.4 180.0
C5 C6 H6 C7 180.0 180.0
H6 C6 C5 H5 180.0 180.0
H6 C6 C7 C8 25.8 355.6
H6 C6 C7 H7 205.7 175.6
C6 C7 H7 C8 180.0 180.0
H7 C7 C6 H6 205.7 175.6
H7 C7 C8 C9 180.0 186.6
H7 C7 C8 H8 0.0 6.6
C7 C8 H8 C9 180.0 180.0
H8 C8 C7 H7 0.0 6.6
H8 C8 C9 C10 71.3 305.4
H8 C8 C9 H9C1 191.3 65.4
H8 C8 C9 H9C2 311.3 185.5
C8 C9 H9C1 C10 240.0 240.0
H9C1 C9 C8 H8 191.3 65.4
C8 C9 H9C1 H9C2 120.0 120.1
H9C1 C9 C10 C11 82.4 7.8
C10 C9 H9C1 H9C2 240.0 240.0
H9C1 C9 C10 H10 262.4 187.8
C8 C9 H9C2 C10 120.0 120.0
H9C2 C9 C8 H8 311.3 185.5
C8 C9 H9C2 H9C1 240.0 239.9
H9C2 C9 C10 C11 322.4 247.8
C10 C9 H9C2 H9C1 120.0 120.0
H9C2 C9 C10 H10 142.4 67.8
C9 C10 H10 C11 180.0 180.0
H10 C10 C9 H9C1 262.4 187.8
H10 C10 C9 H9C2 142.4 67.8
H10 C10 C11 C12 180.0 186.9
H10 C10 C11 H11 0.0 6.9
C10 C11 H11 C12 180.0 180.0
H11 C11 C10 H10 0.0 6.9
H11 C11 C12 C13 296.6 306.7
H11 C11 C12 H121 56.6 66.6
H11 C11 C12 H122 176.6 186.7
C11 C12 H121 C13 240.0 240.0
H121 C12 C11 H11 56.6 66.6
C11 C12 H121 H122 120.0 120.0
H121 C12 C13 C14 120.9 7.2
C13 C12 H121 H122 240.0 240.0
H121 C12 C13 H13 300.9 187.2
C11 C12 H122 C13 120.0 120.0
H122 C12 C11 H11 176.6 186.7
C11 C12 H122 H121 240.0 240.0
H122 C12 C13 C14 1.0 247.1
C13 C12 H122 H121 120.0 120.0
H122 C12 C13 H13 181.0 67.1
C12 C13 H13 C14 180.0 180.0
H13 C13 C12 H121 300.9 187.2
H13 C13 C12 H122 181.0 67.1
H13 C13 C14 C15 180.0 187.5
H13 C13 C14 H14 360.0 7.6
C13 C14 H14 C15 180.0 180.0
H14 C14 C13 H13 360.0 7.6
H14 C14 C15 C16 337.2 307.1
H14 C14 C15 H151 97.2 67.1
H14 C14 C15 H152 217.2 187.1
C14 C15 H151 C16 240.0 240.0
H151 C15 C14 H14 97.2 67.1
C14 C15 H151 H152 120.0 120.0
H151 C15 C16 C17 354.7 6.7
C16 C15 H151 H152 240.0 239.9
H151 C15 C16 H16 174.7 186.7
C14 C15 H152 C16 120.0 120.0
H152 C15 C14 H14 217.2 187.1
C14 C15 H152 H151 240.0 240.0
H152 C15 C16 C17 234.7 246.6
C16 C15 H152 H151 120.0 120.1
H152 C15 C16 H16 54.7 66.6
C15 C16 H16 C17 180.0 180.0
H16 C16 C15 H151 174.7 186.7
H16 C16 C15 H152 54.7 66.6
H16 C16 C17 C18 180.0 186.9
H16 C16 C17 H17 360.0 6.9
C16 C17 H17 C18 180.0 180.1
H17 C17 C16 H16 360.0 6.9
H17 C17 C18 C19 331.7 307.8
H17 C17 C18 H181 91.7 67.8
H17 C17 C18 H182 211.7 187.8
C17 C18 H181 C19 240.0 240.0
H181 C18 C17 H17 91.7 67.8
C17 C18 H181 H182 120.0 120.0
H181 C18 C19 C20 62.1 3.9
C19 C18 H181 H182 240.0 240.0
H181 C18 C19 H19 242.1 183.9
C17 C18 H182 C19 120.0 120.0
H182 C18 C17 H17 211.7 187.8
C17 C18 H182 H181 240.0 240.0
H182 C18 C19 C20 302.2 243.9
C19 C18 H182 H181 120.0 120.0
H182 C18 C19 H19 122.1 63.9
C18 C19 H19 C20 180.0 180.0
H19 C19 C18 H181 242.1 183.9
H19 C19 C18 H182 122.1 63.9
H19 C19 C20 C21 180.1 172.0
H19 C19 C20 H20 0.1 352.0
C19 C20 H20 C21 180.0 179.9
H20 C20 C19 H19 0.1 352.0
H20 C20 C21 C22 38.0 299.6
H20 C20 C21 H211 158.0 59.7
H20 C20 C21 H212 278.0 179.7
C20 C21 H211 C22 240.0 240.0
H211 C21 C20 H20 158.0 59.7
C20 C21 H211 H212 120.0 120.0
C22 C21 H211 H212 240.0 240.0
H211 C21 C22 H221 63.1 59.9
H211 C21 C22 H222 183.1 179.9
H211 C21 C22 H223 303.1 299.9
C20 C21 H212 C22 120.0 119.9
H212 C21 C20 H20 278.0 179.7
C20 C21 H212 H211 240.0 240.0
C22 C21 H212 H211 120.0 120.0
H212 C21 C22 H221 303.1 299.9
H212 C21 C22 H222 63.1 59.9
H212 C21 C22 H223 183.1 179.9
H221 C22 C21 H211 63.1 59.9
H221 C22 C21 H212 303.1 299.9
C21 C22 H221 H222 120.0 120.0
C21 C22 H221 H223 240.0 240.0
H222 C22 H221 H223 120.0 120.0
H222 C22 C21 H211 183.1 179.9
H222 C22 C21 H212 63.1 59.9
C21 C22 H222 H221 240.0 240.0
C21 C22 H222 H223 120.0 120.0
H221 C22 H222 H223 240.1 240.0
H223 C22 C21 H211 303.1 299.9
H223 C22 C21 H212 183.1 179.9
C21 C22 H223 H221 120.0 120.0
C21 C22 H223 H222 240.0 240.0
H221 C22 H223 H222 120.0 120.0