PDB Chemical Component 4GW
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 4GW
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O1 |
PBU |
1.499 |
1.480 |
| OAO |
PBU |
1.508 |
1.610 |
| PBU |
OBA |
1.552 |
1.610 |
| PBU |
OAH |
1.515 |
1.610 |
| OBA |
PBT |
1.554 |
1.611 |
| C5' |
O5' |
1.393 |
1.430 |
| C5' |
C4' |
1.477 |
1.530 |
| O5' |
PBT |
1.555 |
1.610 |
| O4' |
C4' |
1.400 |
1.438 |
| O4' |
C1' |
1.484 |
1.443 |
| PBT |
OAN |
1.506 |
1.479 |
| PBT |
OAG |
1.515 |
1.610 |
| C4' |
C3' |
1.492 |
1.540 |
| CAP |
CAQ |
1.425 |
1.363 |
| CAP |
CBE |
1.403 |
1.373 |
| CAQ |
CBF |
1.404 |
1.369 |
| CBE |
CBD |
1.483 |
1.408 |
| CBE |
SBB |
1.687 |
1.758 |
| CBD |
OAD |
1.380 |
1.215 |
| C1' |
NBS |
1.466 |
1.466 |
| C1' |
C2' |
1.477 |
1.549 |
| CAR |
NBS |
1.354 |
1.363 |
| CAR |
CBG |
1.401 |
1.369 |
| C3' |
O3' |
1.364 |
1.429 |
| C3' |
C2' |
1.470 |
1.548 |
| CBF |
CBG |
1.509 |
1.475 |
| CBF |
SBB |
1.704 |
1.758 |
| O2' |
C2' |
1.389 |
1.430 |
| NBS |
CBI |
1.339 |
1.343 |
| CBG |
CBH |
1.391 |
1.471 |
| CBI |
OAF |
1.217 |
1.215 |
| CBI |
NAV |
1.341 |
1.345 |
| CBH |
NAV |
1.346 |
1.349 |
| CBH |
OAE |
1.377 |
1.217 |
| CBD |
H1 |
1.080 |
1.080 |
| CAP |
H4 |
1.080 |
1.080 |
| CAQ |
H5 |
1.080 |
1.080 |
| CAR |
H7 |
1.080 |
1.080 |
| NAV |
H8 |
1.001 |
0.970 |
| C1' |
H9 |
1.100 |
1.089 |
| C2' |
H10 |
1.100 |
1.091 |
| O2' |
H11 |
0.950 |
0.967 |
| C3' |
H12 |
1.101 |
1.090 |
| O3' |
H13 |
0.950 |
0.967 |
| C4' |
H14 |
1.100 |
1.090 |
| C5' |
H15 |
1.100 |
1.090 |
| C5' |
H16 |
1.100 |
1.090 |
| OAG |
H17 |
0.950 |
0.967 |
| OAO |
H18 |
0.951 |
0.967 |
| OAH |
H19 |
0.950 |
0.967 |
Bond Angles for 4GW
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OAO |
PBU |
OAH |
106.2 |
109.5 |
| PBU |
OAH |
H19 |
109.5 |
114.0 |
| C5' |
O5' |
PBT |
118.9 |
123.0 |
| O5' |
C5' |
H15 |
107.4 |
109.5 |
| O5' |
C5' |
H16 |
107.4 |
109.4 |
| C5' |
C4' |
H14 |
108.8 |
110.0 |
| O5' |
PBT |
OAN |
109.1 |
109.5 |
| O5' |
PBT |
OAG |
110.6 |
109.4 |
| O4' |
C4' |
C3' |
104.7 |
107.3 |
| O4' |
C4' |
H14 |
109.9 |
109.9 |
| O4' |
C1' |
C2' |
105.4 |
103.5 |
| O4' |
C1' |
H9 |
108.5 |
110.8 |
| OAN |
PBT |
OAG |
108.6 |
109.5 |
| PBT |
OAG |
H17 |
109.5 |
114.1 |
| C4' |
C3' |
H12 |
108.5 |
110.6 |
| CAP |
CAQ |
CBF |
114.2 |
114.8 |
| CAQ |
CAP |
H4 |
123.0 |
122.7 |
| CAP |
CAQ |
H5 |
122.9 |
122.6 |
| CAQ |
CBF |
CBG |
125.4 |
125.1 |
| CBF |
CAQ |
H5 |
122.9 |
122.6 |
| CBE |
CBD |
H1 |
121.8 |
119.9 |
| OAD |
CBD |
H1 |
121.7 |
120.1 |
| C2' |
C1' |
H9 |
108.6 |
110.7 |
| C1' |
C2' |
H10 |
111.0 |
110.9 |
| CAR |
NBS |
CBI |
120.3 |
121.5 |
| NBS |
CAR |
H7 |
119.8 |
120.3 |
| CAR |
CBG |
CBH |
117.1 |
118.3 |
| O3' |
C3' |
H12 |
110.3 |
110.4 |
| C3' |
O3' |
H13 |
109.5 |
114.0 |
| C3' |
C2' |
H10 |
111.1 |
110.9 |
| CBF |
CBG |
CBH |
121.2 |
120.9 |
| O2' |
C2' |
H10 |
112.5 |
110.8 |
| CBG |
CBH |
NAV |
120.2 |
118.6 |
| CBG |
CBH |
OAE |
119.9 |
120.7 |
| CBI |
NAV |
H8 |
119.5 |
119.8 |
| OAE |
CBH |
NAV |
119.8 |
120.7 |
| CBH |
NAV |
H8 |
119.5 |
119.8 |
| H15 |
C5' |
H16 |
109.5 |
109.5 |
Torsion Angles for 4GW
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1 |
PBU |
OAH |
H19 |
0.0 |
60.0 |
| OAO |
PBU |
OAH |
H19 |
119.7 |
300.0 |
| OBA |
PBT |
OAG |
H17 |
121.6 |
300.0 |
| O5' |
C5' |
C4' |
H14 |
172.7 |
305.4 |
| C5' |
O5' |
PBT |
OAN |
35.5 |
305.0 |
| C5' |
O5' |
PBT |
OAG |
154.9 |
65.1 |
| H15 |
C5' |
O5' |
H16 |
242.3 |
120.0 |
| O4' |
C4' |
C5' |
H14 |
121.4 |
121.1 |
| C5' |
C4' |
C3' |
H12 |
311.6 |
357.3 |
| PBT |
O5' |
C5' |
H15 |
9.0 |
60.0 |
| PBT |
O5' |
C5' |
H16 |
126.7 |
300.0 |
| OAN |
PBT |
O5' |
OAG |
240.6 |
240.0 |
| O5' |
PBT |
OAG |
H17 |
240.3 |
60.0 |
| C5' |
C4' |
O4' |
H14 |
239.3 |
238.8 |
| C4' |
O4' |
C1' |
C2' |
9.4 |
319.9 |
| C4' |
O4' |
C1' |
H9 |
125.6 |
78.5 |
| O4' |
C4' |
C3' |
H12 |
73.3 |
116.7 |
| C2' |
C1' |
O4' |
H9 |
243.8 |
241.4 |
| O4' |
C1' |
C2' |
H10 |
208.4 |
278.9 |
| O5' |
PBT |
OAN |
OAG |
120.6 |
120.0 |
| OAN |
PBT |
OAG |
H17 |
0.0 |
180.0 |
| O5' |
PBT |
OAG |
OAN |
240.3 |
240.0 |
| O4' |
C4' |
C3' |
H14 |
242.6 |
240.6 |
| O3' |
C3' |
C4' |
H12 |
123.4 |
122.6 |
| C4' |
C3' |
O3' |
H13 |
279.8 |
176.2 |
| C4' |
C3' |
C2' |
H10 |
162.7 |
97.3 |
| CAP |
CAQ |
CBF |
CBG |
176.6 |
180.0 |
| CBF |
CAQ |
CAP |
H5 |
180.0 |
180.1 |
| CAP |
CBE |
CBD |
H1 |
14.4 |
360.0 |
| CBF |
CAQ |
CAP |
H4 |
179.3 |
180.0 |
| CAP |
CAQ |
CBF |
H5 |
180.0 |
179.9 |
| CAQ |
CBF |
CBG |
CBH |
180.8 |
295.0 |
| OAD |
CBD |
CBE |
H1 |
180.0 |
179.7 |
| SBB |
CBE |
CBD |
H1 |
194.9 |
180.3 |
| CBE |
CBD |
OAD |
H1 |
180.0 |
180.3 |
| C1' |
NBS |
CAR |
H7 |
1.6 |
0.0 |
| O4' |
C1' |
C2' |
H9 |
116.2 |
118.7 |
| C3' |
C2' |
C1' |
H10 |
117.4 |
118.2 |
| O2' |
C2' |
C1' |
H10 |
234.7 |
236.5 |
| NBS |
CAR |
CBG |
CBH |
355.5 |
0.3 |
| CBF |
CBG |
CAR |
CBH |
187.4 |
179.7 |
| CAR |
CBG |
CBH |
NAV |
4.4 |
359.7 |
| CAR |
CBG |
CBH |
OAE |
180.5 |
179.8 |
| O4' |
C4' |
C3' |
O3' |
196.7 |
239.3 |
| C4' |
C3' |
O3' |
H12 |
237.6 |
237.3 |
| O3' |
C3' |
C2' |
H10 |
285.3 |
216.0 |
| O4' |
C4' |
C3' |
C2' |
318.8 |
358.0 |
| C3' |
C2' |
C1' |
H9 |
209.6 |
278.4 |
| C1' |
C2' |
C3' |
H10 |
242.6 |
241.8 |
| O2' |
C2' |
C3' |
H10 |
126.2 |
123.5 |
| CBG |
CBF |
CAQ |
H5 |
356.6 |
0.1 |
| CAR |
CBG |
CBF |
CBH |
172.3 |
180.3 |
| CBF |
CBG |
CBH |
NAV |
177.1 |
180.0 |
| CBF |
CBG |
CBH |
OAE |
353.1 |
0.1 |
| O2' |
C2' |
C1' |
H9 |
326.9 |
36.6 |
| C1' |
C2' |
O2' |
H10 |
124.5 |
123.6 |
| C3' |
C2' |
O2' |
H10 |
234.6 |
236.4 |
| CBI |
NBS |
CAR |
H7 |
182.6 |
180.0 |
| NBS |
CBI |
NAV |
H8 |
180.5 |
180.2 |
| OAE |
CBH |
CBG |
NAV |
176.1 |
180.1 |
| CBG |
CBH |
NAV |
H8 |
177.5 |
180.1 |
| CAR |
NBS |
CBI |
OAF |
177.9 |
180.0 |
| OAF |
CBI |
NAV |
H8 |
2.0 |
359.9 |
| CAR |
NBS |
CBI |
NAV |
359.5 |
359.7 |
| CBH |
NAV |
CBI |
H8 |
180.0 |
180.1 |
| CBG |
CBH |
NAV |
OAE |
176.1 |
180.1 |
| CBI |
NAV |
CBH |
H8 |
180.0 |
179.9 |
| CBG |
CBH |
OAE |
NAV |
183.9 |
179.9 |
| OAE |
CBH |
NAV |
H8 |
1.4 |
360.0 |
| H4 |
CAP |
CAQ |
CBF |
179.3 |
180.0 |
| H4 |
CAP |
CAQ |
H5 |
359.3 |
359.9 |
| CAP |
CAQ |
H5 |
CBF |
180.0 |
180.1 |
| H5 |
CAQ |
CAP |
H4 |
359.3 |
359.9 |
| H5 |
CAQ |
CBF |
CBG |
356.6 |
0.1 |
| H7 |
CAR |
NBS |
CBI |
182.6 |
180.0 |
| H7 |
CAR |
CBG |
CBH |
175.5 |
180.3 |
| O4' |
C1' |
H9 |
C2' |
245.9 |
245.8 |
| H9 |
C1' |
C2' |
H10 |
92.2 |
160.1 |
| H10 |
C2' |
C1' |
H9 |
92.2 |
160.1 |
| H11 |
O2' |
C2' |
H10 |
55.5 |
56.4 |
| H12 |
C3' |
O3' |
H13 |
42.2 |
298.9 |
| H12 |
C3' |
C2' |
H10 |
48.4 |
338.5 |
| H13 |
O3' |
C3' |
H12 |
42.2 |
298.9 |
| O4' |
C4' |
H14 |
C3' |
114.0 |
117.8 |
| H14 |
C4' |
C3' |
H12 |
190.7 |
236.1 |
| H15 |
C5' |
O5' |
PBT |
9.0 |
60.0 |
| O5' |
C5' |
H15 |
H16 |
116.4 |
240.0 |
| H15 |
C5' |
C4' |
H14 |
51.6 |
65.3 |
| H16 |
C5' |
O5' |
PBT |
126.7 |
300.0 |
| O5' |
C5' |
H16 |
H15 |
243.6 |
120.0 |
| H16 |
C5' |
C4' |
H14 |
293.9 |
185.4 |
| H18 |
OAO |
PBU |
OAH |
242.2 |
300.0 |