Atom Nomenclature for 4FE

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 4FE

Atom Name (V3) Atom Name (V2)
C8 C8
O4 O4
C5 C5
C6 C6
C7 C7
C2 C2
C3 C3
O3 O3
C1 C1
C10 C10
C4 C4
C9 C9
O2 O2
O1 O1
H8 H8
H8A H8A
H8B H8B
H6 H6
H7 H7
H3 H3
HO3 HO3
H10 H10
H4 H4
HO1 HO1