Atom Nomenclature for 4EE

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 4EE

Atom Name (V3) Atom Name (V2)
C10 C1
N12 N1
C13 C2
C20 C3
C21 C4
C22 C5
C24 C6
C26 C7
C01 C8
C02 C9
O03 O1
C04 C10
C05 C11
C06 C12
C07 C13
C08 C14
C09 C15
N11 N2
N14 N3
N15 N4
C16 C16
S17 S1
C18 C17
C19 C18
C23 C19
O25 O2
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H18 H18
H19 H19
H20 H20