PDB Chemical Component 4DK
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 4DK
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C44 |
C46 |
1.380 |
1.376 |
| C44 |
C42 |
1.385 |
1.388 |
| C07 |
N06 |
1.285 |
1.303 |
| C07 |
O09 |
1.356 |
1.341 |
| C46 |
C48 |
1.388 |
1.393 |
| N06 |
C05 |
1.385 |
1.341 |
| C42 |
C41 |
1.390 |
1.382 |
| C33 |
C30 |
1.521 |
1.531 |
| C33 |
C36 |
1.496 |
1.530 |
| O09 |
C10 |
1.362 |
1.352 |
| C30 |
N29 |
1.478 |
1.465 |
| C48 |
N49 |
1.358 |
1.371 |
| C48 |
C54 |
1.400 |
1.407 |
| C41 |
C54 |
1.412 |
1.407 |
| C41 |
N29 |
1.422 |
1.395 |
| C05 |
C10 |
1.344 |
1.357 |
| C05 |
C01 |
1.497 |
1.507 |
| N49 |
N51 |
1.362 |
1.401 |
| C54 |
C52 |
1.411 |
1.415 |
| C10 |
C11 |
1.462 |
1.479 |
| N29 |
C27 |
1.397 |
1.386 |
| O39 |
C36 |
1.502 |
1.429 |
| N51 |
C52 |
1.317 |
1.301 |
| C11 |
C55 |
1.398 |
1.394 |
| C11 |
C12 |
1.388 |
1.396 |
| C27 |
N28 |
1.339 |
1.329 |
| C27 |
C25 |
1.391 |
1.397 |
| C55 |
C18 |
1.390 |
1.386 |
| N28 |
C21 |
1.335 |
1.325 |
| C12 |
C14 |
1.379 |
1.379 |
| C25 |
C23 |
1.371 |
1.381 |
| C18 |
N19 |
1.415 |
1.398 |
| C18 |
C16 |
1.393 |
1.390 |
| C14 |
C16 |
1.388 |
1.383 |
| C21 |
N19 |
1.364 |
1.385 |
| C21 |
N22 |
1.345 |
1.326 |
| C23 |
N22 |
1.344 |
1.325 |
| C01 |
H02 |
1.100 |
1.090 |
| C01 |
H04 |
1.100 |
1.091 |
| C01 |
H03 |
1.101 |
1.090 |
| C07 |
H08 |
1.080 |
1.080 |
| C12 |
H13 |
1.080 |
1.080 |
| C14 |
H15 |
1.081 |
1.080 |
| C16 |
H17 |
1.080 |
1.080 |
| N19 |
H20 |
1.000 |
0.971 |
| C23 |
H24 |
1.080 |
1.080 |
| C25 |
H26 |
1.079 |
1.080 |
| C30 |
H32 |
1.100 |
1.090 |
| C30 |
H31 |
1.100 |
1.090 |
| C33 |
H34 |
1.100 |
1.090 |
| C33 |
H35 |
1.100 |
1.089 |
| C36 |
H38 |
1.100 |
1.090 |
| C36 |
H37 |
1.100 |
1.090 |
| O39 |
H40 |
0.950 |
0.967 |
| C42 |
H43 |
1.080 |
1.080 |
| C44 |
H45 |
1.080 |
1.080 |
| C46 |
H47 |
1.080 |
1.079 |
| N49 |
H50 |
1.001 |
0.970 |
| C52 |
H53 |
1.080 |
1.080 |
| C55 |
H56 |
1.080 |
1.080 |
Bond Angles for 4DK
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C44 |
C46 |
C48 |
118.0 |
120.0 |
| C46 |
C44 |
H45 |
119.3 |
119.7 |
| C44 |
C46 |
H47 |
121.0 |
120.0 |
| C44 |
C42 |
H43 |
119.7 |
119.8 |
| C07 |
O09 |
C10 |
103.9 |
107.7 |
| O09 |
C07 |
H08 |
122.6 |
125.4 |
| C46 |
C48 |
N49 |
131.3 |
133.7 |
| C46 |
C48 |
C54 |
122.5 |
119.7 |
| C48 |
C46 |
H47 |
121.0 |
120.0 |
| N06 |
C05 |
C10 |
109.5 |
107.5 |
| C42 |
C41 |
C54 |
119.4 |
119.5 |
| C33 |
C30 |
H32 |
108.5 |
109.4 |
| C33 |
C30 |
H31 |
108.5 |
109.5 |
| C36 |
C33 |
H34 |
108.5 |
109.5 |
| C36 |
C33 |
H35 |
108.4 |
109.5 |
| C33 |
C36 |
H38 |
108.0 |
109.4 |
| C33 |
C36 |
H37 |
108.0 |
109.5 |
| C05 |
C10 |
O09 |
107.9 |
106.9 |
| O09 |
C10 |
C11 |
116.4 |
126.5 |
| N49 |
C48 |
C54 |
106.2 |
106.6 |
| C48 |
N49 |
N51 |
111.7 |
108.1 |
| C48 |
N49 |
H50 |
124.1 |
125.9 |
| C41 |
C54 |
C48 |
118.1 |
119.6 |
| C48 |
C54 |
C52 |
104.7 |
106.9 |
| C41 |
C54 |
C52 |
137.2 |
133.5 |
| C05 |
C10 |
C11 |
135.7 |
126.6 |
| C05 |
C01 |
H02 |
109.5 |
109.5 |
| C05 |
C01 |
H04 |
109.5 |
109.5 |
| C05 |
C01 |
H03 |
109.4 |
109.5 |
| N49 |
N51 |
C52 |
105.9 |
109.7 |
| N51 |
N49 |
H50 |
124.1 |
126.0 |
| C54 |
C52 |
H53 |
124.3 |
125.7 |
| C10 |
C11 |
C55 |
120.7 |
120.1 |
| C10 |
C11 |
C12 |
120.0 |
120.1 |
| O39 |
C36 |
H38 |
108.0 |
109.5 |
| O39 |
C36 |
H37 |
108.0 |
109.5 |
| N51 |
C52 |
H53 |
124.3 |
125.6 |
| C12 |
C11 |
C55 |
119.2 |
119.8 |
| C11 |
C55 |
C18 |
120.5 |
119.8 |
| C11 |
C55 |
H56 |
119.7 |
120.1 |
| C11 |
C12 |
C14 |
120.4 |
120.0 |
| C11 |
C12 |
H13 |
119.8 |
120.0 |
| C27 |
C25 |
H26 |
122.1 |
120.8 |
| C12 |
C14 |
C16 |
120.4 |
120.2 |
| C14 |
C12 |
H13 |
119.8 |
120.0 |
| C12 |
C14 |
H15 |
119.8 |
119.9 |
| C25 |
C23 |
H24 |
118.2 |
120.4 |
| C18 |
N19 |
H20 |
114.3 |
120.0 |
| C18 |
C16 |
H17 |
120.0 |
119.9 |
| C16 |
C14 |
H15 |
119.8 |
119.9 |
| C14 |
C16 |
H17 |
120.0 |
119.9 |
| C21 |
N19 |
H20 |
114.3 |
120.0 |
| H02 |
C01 |
H04 |
109.5 |
109.4 |
| H02 |
C01 |
H03 |
109.5 |
109.5 |
| H04 |
C01 |
H03 |
109.5 |
109.5 |
| H32 |
C30 |
H31 |
109.5 |
109.5 |
| H34 |
C33 |
H35 |
109.5 |
109.5 |
| H38 |
C36 |
H37 |
109.5 |
109.5 |
Torsion Angles for 4DK
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C46 |
C44 |
C42 |
H43 |
183.2 |
180.0 |
| C44 |
C46 |
C48 |
N49 |
179.4 |
179.9 |
| C44 |
C46 |
C48 |
C54 |
359.7 |
359.9 |
| C48 |
C46 |
C44 |
H47 |
180.0 |
180.1 |
| C44 |
C42 |
C41 |
C54 |
356.3 |
360.0 |
| C07 |
N06 |
C05 |
C10 |
0.4 |
360.0 |
| C05 |
C10 |
O09 |
C07 |
359.6 |
360.0 |
| C07 |
O09 |
C10 |
C11 |
181.2 |
180.3 |
| C48 |
C46 |
C44 |
H45 |
178.8 |
180.0 |
| C44 |
C46 |
C48 |
H47 |
180.0 |
179.9 |
| N49 |
C48 |
C46 |
C54 |
179.7 |
180.0 |
| C46 |
C48 |
N49 |
N51 |
181.0 |
180.0 |
| C46 |
C48 |
N49 |
H50 |
1.0 |
0.0 |
| C41 |
C54 |
C48 |
C46 |
359.7 |
0.0 |
| C46 |
C48 |
C54 |
C52 |
178.5 |
180.0 |
| N06 |
C05 |
C10 |
O09 |
0.0 |
0.0 |
| N06 |
C05 |
C10 |
C11 |
178.0 |
179.7 |
| N06 |
C05 |
C01 |
H02 |
0.0 |
265.2 |
| N06 |
C05 |
C01 |
H04 |
120.0 |
25.1 |
| N06 |
C05 |
C01 |
H03 |
240.0 |
145.1 |
| C42 |
C41 |
C54 |
C48 |
2.2 |
360.0 |
| C42 |
C41 |
C54 |
C52 |
183.9 |
180.0 |
| H32 |
C30 |
C33 |
H31 |
241.1 |
120.0 |
| C36 |
C33 |
C30 |
H32 |
49.4 |
60.1 |
| C36 |
C33 |
C30 |
H31 |
168.2 |
300.0 |
| O39 |
C36 |
C33 |
H38 |
239.1 |
240.0 |
| O39 |
C36 |
C33 |
H37 |
120.8 |
120.0 |
| H34 |
C33 |
C36 |
H35 |
118.8 |
120.0 |
| H38 |
C36 |
C33 |
H37 |
241.7 |
240.0 |
| C10 |
O09 |
C07 |
H08 |
180.6 |
180.1 |
| C05 |
C10 |
O09 |
C11 |
178.4 |
179.7 |
| O09 |
C10 |
C11 |
C55 |
31.2 |
311.0 |
| O09 |
C10 |
C11 |
C12 |
207.9 |
131.3 |
| C46 |
C48 |
N49 |
C54 |
180.3 |
180.0 |
| N49 |
C48 |
C46 |
H47 |
359.4 |
0.0 |
| C41 |
C54 |
C48 |
N49 |
180.0 |
180.0 |
| N49 |
C48 |
C54 |
C52 |
358.8 |
360.0 |
| C48 |
N49 |
N51 |
C52 |
0.2 |
0.0 |
| N51 |
N49 |
C48 |
H50 |
180.0 |
180.0 |
| C46 |
C48 |
C54 |
N49 |
179.7 |
180.0 |
| C54 |
C48 |
C46 |
H47 |
179.7 |
180.0 |
| C54 |
C48 |
N49 |
N51 |
0.7 |
360.0 |
| C54 |
C48 |
N49 |
H50 |
180.7 |
180.0 |
| C41 |
C54 |
C48 |
C52 |
181.2 |
180.0 |
| C48 |
C54 |
C52 |
H53 |
181.4 |
180.0 |
| C46 |
C48 |
C54 |
C41 |
359.7 |
0.0 |
| N49 |
C48 |
C54 |
C41 |
180.0 |
180.0 |
| C48 |
C54 |
C41 |
C52 |
178.3 |
180.0 |
| C41 |
C54 |
C52 |
H53 |
359.9 |
360.0 |
| C07 |
O09 |
C10 |
C05 |
359.6 |
360.0 |
| O09 |
C10 |
C05 |
C11 |
182.1 |
180.3 |
| C10 |
C05 |
C01 |
H02 |
178.7 |
84.9 |
| C10 |
C05 |
C01 |
H04 |
298.7 |
204.8 |
| C10 |
C05 |
C01 |
H03 |
58.7 |
324.9 |
| C05 |
C10 |
C11 |
C55 |
213.4 |
131.4 |
| C05 |
C10 |
C11 |
C12 |
30.1 |
311.7 |
| H02 |
C01 |
C05 |
H04 |
240.0 |
240.0 |
| H02 |
C01 |
C05 |
H03 |
120.0 |
120.0 |
| H04 |
C01 |
C05 |
H03 |
240.0 |
240.0 |
| N51 |
N49 |
C48 |
C54 |
0.7 |
360.0 |
| C48 |
N49 |
N51 |
H50 |
180.0 |
180.0 |
| N49 |
N51 |
C52 |
H53 |
179.0 |
180.0 |
| C41 |
C54 |
C52 |
C48 |
178.4 |
180.0 |
| N51 |
C52 |
C54 |
H53 |
180.0 |
180.0 |
| C05 |
C10 |
C11 |
O09 |
182.2 |
180.4 |
| C12 |
C11 |
C10 |
C55 |
176.7 |
180.3 |
| C10 |
C11 |
C55 |
C18 |
178.3 |
179.8 |
| C10 |
C11 |
C55 |
H56 |
358.2 |
0.0 |
| C10 |
C11 |
C12 |
C14 |
182.0 |
180.0 |
| C10 |
C11 |
C12 |
H13 |
2.0 |
360.0 |
| N29 |
C27 |
C25 |
H26 |
3.2 |
0.3 |
| O39 |
C36 |
C33 |
H34 |
59.3 |
60.1 |
| O39 |
C36 |
C33 |
H35 |
300.5 |
300.1 |
| C33 |
C36 |
O39 |
H38 |
120.9 |
119.9 |
| C33 |
C36 |
O39 |
H37 |
239.2 |
240.0 |
| H38 |
C36 |
O39 |
H37 |
118.3 |
120.0 |
| C48 |
C54 |
C52 |
N51 |
1.4 |
0.0 |
| C41 |
C54 |
C52 |
N51 |
179.8 |
180.0 |
| C52 |
N51 |
N49 |
H50 |
180.2 |
180.0 |
| C54 |
C52 |
N51 |
H53 |
180.0 |
180.0 |
| C10 |
C11 |
C55 |
C12 |
176.7 |
180.3 |
| C55 |
C11 |
C12 |
C14 |
358.7 |
0.3 |
| C55 |
C11 |
C12 |
H13 |
178.7 |
180.3 |
| C10 |
C11 |
C12 |
C55 |
183.3 |
179.7 |
| C12 |
C11 |
C55 |
C18 |
1.6 |
359.5 |
| C12 |
C11 |
C55 |
H56 |
181.5 |
179.7 |
| C11 |
C12 |
C14 |
C16 |
359.9 |
0.0 |
| C14 |
C12 |
C11 |
H13 |
180.0 |
180.0 |
| C11 |
C12 |
C14 |
H15 |
179.9 |
180.0 |
| N28 |
C27 |
C25 |
H26 |
183.9 |
179.8 |
| C27 |
C25 |
C23 |
H24 |
178.0 |
180.0 |
| C11 |
C55 |
C18 |
H56 |
180.0 |
180.2 |
| C55 |
C18 |
N19 |
H20 |
164.0 |
214.3 |
| C55 |
C18 |
C16 |
H17 |
179.2 |
179.8 |
| N28 |
C21 |
N19 |
H20 |
180.5 |
5.5 |
| C14 |
C12 |
C11 |
C55 |
358.7 |
0.3 |
| C11 |
C12 |
C14 |
H13 |
180.0 |
180.0 |
| C16 |
C14 |
C12 |
H15 |
180.0 |
180.1 |
| C12 |
C14 |
C16 |
H17 |
181.1 |
179.9 |
| C11 |
C55 |
C18 |
N19 |
180.5 |
180.3 |
| N19 |
C18 |
C16 |
H17 |
358.3 |
360.0 |
| C21 |
N19 |
C18 |
H20 |
180.0 |
180.0 |
| C11 |
C55 |
C18 |
C16 |
359.5 |
0.5 |
| C18 |
C16 |
C14 |
H15 |
181.1 |
180.0 |
| C14 |
C16 |
C18 |
H17 |
180.0 |
180.0 |
| C16 |
C14 |
C12 |
H13 |
179.9 |
180.0 |
| C12 |
C14 |
C16 |
H15 |
180.0 |
179.9 |
| C18 |
C16 |
C14 |
H17 |
180.0 |
180.0 |
| C18 |
N19 |
C21 |
H20 |
180.0 |
180.0 |
| N22 |
C21 |
N19 |
H20 |
0.7 |
185.6 |
| C05 |
C01 |
H02 |
H04 |
120.0 |
120.0 |
| C05 |
C01 |
H02 |
H03 |
240.0 |
240.0 |
| H04 |
C01 |
H02 |
H03 |
120.0 |
119.9 |
| C05 |
C01 |
H04 |
H02 |
240.0 |
240.0 |
| C05 |
C01 |
H04 |
H03 |
120.0 |
120.0 |
| H02 |
C01 |
H04 |
H03 |
240.0 |
240.1 |
| C05 |
C01 |
H03 |
H02 |
120.0 |
120.0 |
| C05 |
C01 |
H03 |
H04 |
240.0 |
239.9 |
| H02 |
C01 |
H03 |
H04 |
120.0 |
119.9 |
| H08 |
C07 |
O09 |
C10 |
180.6 |
180.1 |
| H13 |
C12 |
C11 |
C55 |
178.7 |
180.3 |
| C11 |
C12 |
H13 |
C14 |
180.0 |
180.0 |
| H13 |
C12 |
C14 |
C16 |
179.9 |
180.0 |
| H13 |
C12 |
C14 |
H15 |
359.9 |
360.0 |
| C12 |
C14 |
H15 |
C16 |
180.0 |
180.1 |
| H15 |
C14 |
C12 |
H13 |
359.9 |
360.0 |
| H15 |
C14 |
C16 |
H17 |
1.1 |
0.0 |
| H17 |
C16 |
C14 |
H15 |
1.1 |
0.0 |
| H26 |
C25 |
C23 |
H24 |
358.0 |
0.0 |
| C33 |
C30 |
H32 |
H31 |
118.2 |
239.9 |
| C33 |
C30 |
H31 |
H32 |
241.8 |
120.0 |
| H34 |
C33 |
C30 |
H32 |
170.0 |
180.0 |
| H34 |
C33 |
C30 |
H31 |
288.8 |
60.0 |
| C36 |
C33 |
H34 |
H35 |
241.9 |
239.9 |
| H34 |
C33 |
C36 |
H38 |
180.2 |
180.1 |
| H34 |
C33 |
C36 |
H37 |
298.5 |
300.1 |
| H35 |
C33 |
C30 |
H32 |
288.8 |
300.0 |
| H35 |
C33 |
C30 |
H31 |
47.7 |
180.0 |
| C36 |
C33 |
H35 |
H34 |
118.2 |
120.0 |
| H35 |
C33 |
C36 |
H38 |
61.4 |
60.0 |
| H35 |
C33 |
C36 |
H37 |
179.7 |
180.0 |
| H38 |
C36 |
C33 |
H34 |
180.2 |
180.1 |
| H38 |
C36 |
C33 |
H35 |
61.4 |
60.0 |
| C33 |
C36 |
H38 |
H37 |
117.4 |
120.0 |
| O39 |
C36 |
H38 |
H37 |
242.6 |
239.9 |
| H37 |
C36 |
C33 |
H34 |
298.5 |
300.1 |
| H37 |
C36 |
C33 |
H35 |
179.7 |
180.0 |
| C33 |
C36 |
H37 |
H38 |
242.6 |
240.0 |
| O39 |
C36 |
H37 |
H38 |
117.4 |
120.0 |
| H40 |
O39 |
C36 |
H38 |
59.1 |
60.1 |
| H40 |
O39 |
C36 |
H37 |
300.8 |
300.0 |
| H43 |
C42 |
C41 |
C54 |
176.3 |
180.0 |
| H45 |
C44 |
C46 |
C48 |
178.8 |
180.0 |
| H45 |
C44 |
C46 |
H47 |
358.8 |
359.9 |
| H45 |
C44 |
C42 |
H43 |
3.2 |
0.0 |
| C44 |
C46 |
H47 |
C48 |
180.0 |
180.1 |
| H47 |
C46 |
C44 |
H45 |
358.8 |
359.9 |
| H47 |
C46 |
C48 |
N49 |
359.4 |
0.0 |
| H47 |
C46 |
C48 |
C54 |
179.7 |
180.0 |
| H50 |
N49 |
C48 |
C54 |
180.7 |
180.0 |
| C48 |
N49 |
H50 |
N51 |
180.0 |
179.9 |
| H50 |
N49 |
N51 |
C52 |
180.2 |
180.0 |
| C11 |
C55 |
H56 |
C18 |
180.0 |
179.8 |