PDB Chemical Component 4DE

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 4DE

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O3	C2	1.226	1.215
C2	O4	1.377	1.347
C2	C1	1.466	1.473
O4	C5	1.434	1.452
C5	C6	1.515	1.529
C5	H51	1.115	1.089
C5	H52	1.115	1.090
C6	H61	1.115	1.090
C6	H62	1.115	1.090
C6	H63	1.115	1.091
C1	C7	1.427	1.413
C1	C12	1.406	1.381
C7	C8	1.486	1.507
C7	N9	1.331	1.304
C8	H81	1.115	1.090
C8	H82	1.115	1.090
C8	H83	1.115	1.090
N9	N10	1.356	1.398
N10	C12	1.395	1.344
N10	C11	1.440	1.403
C12	C13	1.488	1.507
C13	H131	1.115	1.090
C13	H132	1.115	1.090
C13	H133	1.115	1.089
C11	C14	1.409	1.388
C11	C20	1.405	1.388
C14	C15	1.397	1.381
C14	H14	1.103	1.079
C15	C16	1.399	1.388
C15	H15	1.103	1.080
C16	C19	1.399	1.386
C16	O17	1.388	1.360
C19	C20	1.405	1.381
C19	H19	1.103	1.080
C20	H20	1.103	1.080
O17	C18	1.434	1.429
C18	H181	1.115	1.090
C18	H182	1.115	1.091
C18	H183	1.115	1.089

Bond Angles for 4DE

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O3	C2	O4	124.3	120.0
O3	C2	C1	123.1	120.0
O4	C2	C1	112.5	120.0
C2	O4	C5	123.3	120.0
C2	C1	C7	130.9	126.4
C2	C1	C12	124.7	126.5
O4	C5	C6	110.5	109.5
O4	C5	H51	111.8	109.5
O4	C5	H52	111.8	109.4
C6	C5	H51	111.9	109.4
C6	C5	H52	111.8	109.4
C5	C6	H61	111.9	109.5
C5	C6	H62	110.5	109.5
C5	C6	H63	111.8	109.5
H51	C5	H52	98.6	109.5
H61	C6	H62	111.8	109.4
H61	C6	H63	98.6	109.5
H62	C6	H63	111.8	109.4
C7	C1	C12	104.4	107.1
C1	C7	C8	131.6	126.0
C1	C7	N9	109.9	108.0
C1	C12	N10	107.9	107.4
C1	C12	C13	127.7	126.3
C8	C7	N9	118.4	126.0
C7	C8	H81	104.5	109.4
C7	C8	H82	131.7	109.5
C7	C8	H83	104.5	109.5
C7	N9	N10	109.2	108.9
H81	C8	H82	104.5	109.5
H81	C8	H83	104.5	109.4
H82	C8	H83	104.5	109.5
N9	N10	C12	108.5	108.5
N9	N10	C11	118.9	125.8
C12	N10	C11	132.5	125.7
N10	C12	C13	124.4	126.3
N10	C11	C14	117.5	120.0
N10	C11	C20	124.1	120.0
C12	C13	H131	105.8	109.4
C12	C13	H132	127.7	109.5
C12	C13	H133	105.8	109.5
H131	C13	H132	105.8	109.4
H131	C13	H133	103.5	109.5
H132	C13	H133	105.9	109.5
C14	C11	C20	118.4	120.0
C11	C14	C15	121.0	120.0
C11	C14	H14	119.9	120.0
C11	C20	C19	120.5	120.0
C11	C20	H20	119.7	120.0
C15	C14	H14	119.1	120.0
C14	C15	C16	120.3	120.0
C14	C15	H15	119.8	120.0
C16	C15	H15	119.9	120.0
C15	C16	C19	119.3	120.0
C15	C16	O17	125.0	120.0
C19	C16	O17	115.7	120.0
C16	C19	C20	120.5	120.0
C16	C19	H19	119.5	120.0
C16	O17	C18	116.4	106.8
C20	C19	H19	120.0	120.0
C19	C20	H20	119.8	120.0
O17	C18	H181	109.7	109.5
O17	C18	H182	116.4	109.5
O17	C18	H183	109.7	109.5
H181	C18	H182	109.7	109.5
H181	C18	H183	100.5	109.5
H182	C18	H183	109.7	109.4

Torsion Angles for 4DE

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O4	C2	O3	C1	184.3	180.1
O3	C2	O4	C5	283.6	360.0
O3	C2	C1	C7	150.1	90.0
O3	C2	C1	C12	328.8	269.8
O3	C2	O4	C1	176.1	179.9
O4	C2	C1	C7	326.3	269.9
O4	C2	C1	C12	145.0	89.8
C2	O4	C5	C6	95.2	180.0
C2	O4	C5	H51	329.9	60.0
C2	O4	C5	H52	220.4	300.0
O3	C2	C1	O4	183.8	180.1
C1	C2	O4	C5	107.4	180.0
C7	C1	C2	C12	181.2	180.1
C2	C1	C7	C8	358.7	0.1
C2	C1	C7	N9	179.7	180.0
C2	C1	C12	N10	180.2	179.8
C2	C1	C12	C13	1.0	0.2
C5	O4	C2	C1	107.4	180.0
C6	C5	O4	H51	125.3	120.0
C6	C5	O4	H52	234.7	240.0
O4	C5	C6	H61	54.8	180.0
O4	C5	C6	H62	180.0	300.0
O4	C5	C6	H63	305.3	60.0
H51	C5	O4	H52	109.5	120.1
O4	C5	C6	H51	234.8	240.0
O4	C5	C6	H52	125.3	119.9
H51	C5	C6	H52	250.5	239.9
H61	C6	C5	H62	234.8	240.0
H61	C6	C5	H63	109.5	120.0
H62	C6	C5	H63	234.7	240.0
O4	C5	H51	C6	124.5	120.0
O4	C5	H51	H52	242.3	240.0
C6	C5	H51	H52	117.8	120.0
H51	C5	C6	H61	180.0	300.0
H51	C5	C6	H62	305.2	60.0
H51	C5	C6	H63	70.5	180.0
O4	C5	H52	C6	235.5	240.0
O4	C5	H52	H51	117.7	120.0
C6	C5	H52	H51	242.2	240.0
H52	C5	C6	H61	289.5	60.0
H52	C5	C6	H62	54.7	180.0
H52	C5	C6	H63	180.0	300.0
H61	C6	C5	H51	180.0	300.0
H61	C6	C5	H52	289.5	60.0
C5	C6	H61	H62	124.5	120.0
C5	C6	H61	H63	242.2	240.0
H62	C6	H61	H63	117.7	120.0
H62	C6	C5	H51	305.2	60.0
H62	C6	C5	H52	54.7	180.0
C5	C6	H62	H61	234.7	240.0
C5	C6	H62	H63	125.3	120.0
H61	C6	H62	H63	250.5	240.0
H63	C6	C5	H51	70.5	180.0
H63	C6	C5	H52	180.0	300.0
C5	C6	H63	H61	117.8	120.0
C5	C6	H63	H62	235.5	240.0
H61	C6	H63	H62	117.7	120.0
C2	C1	C7	C12	179.0	179.9
C7	C1	C12	N10	359.3	359.6
C7	C1	C12	C13	180.1	180.1
C8	C7	C1	N9	179.0	180.1
C1	C7	C8	H81	54.7	89.9
C1	C7	C8	H82	180.0	209.9
C1	C7	C8	H83	305.2	330.0
C1	C7	N9	N10	359.6	0.1
C2	C1	C12	C7	181.0	180.1
C12	C1	C7	C8	179.7	180.2
C12	C1	C7	N9	0.7	0.2
N9	N10	C12	C1	0.5	0.4
C1	C12	N10	C11	179.9	180.1
N10	C12	C1	C13	179.2	179.6
C1	C12	C13	H131	54.7	269.6
C1	C12	C13	H132	180.0	29.5
C1	C12	C13	H133	305.3	149.5
C8	C7	C1	C12	179.7	180.2
C1	C7	C8	N9	181.1	179.9
C8	C7	N9	N10	180.4	180.0
H81	C8	C7	H82	234.7	240.0
H81	C8	C7	H83	109.5	119.9
H82	C8	C7	H83	234.8	239.9
N9	C7	C1	C12	0.7	0.2
C1	C7	N9	C8	179.1	180.1
N9	C7	C8	H81	233.6	270.0
N9	C7	C8	H82	358.9	30.0
N9	C7	C8	H83	124.2	150.1
C7	N9	N10	C12	360.0	359.7
C7	N9	N10	C11	180.5	180.0
H81	C8	C7	N9	233.6	270.0
C7	C8	H81	H82	140.9	120.0
C7	C8	H81	H83	250.5	240.0
H82	C8	H81	H83	109.5	120.0
H82	C8	C7	N9	358.9	30.0
C7	C8	H82	H81	234.7	240.0
C7	C8	H82	H83	125.2	120.1
H81	C8	H82	H83	250.5	240.0
H83	C8	C7	N9	124.2	150.1
C7	C8	H83	H81	109.5	119.9
C7	C8	H83	H82	219.1	239.9
H81	C8	H83	H82	109.6	120.0
C1	C12	N10	N9	0.5	0.4
C12	N10	N9	C11	179.5	179.7
N9	N10	C12	C13	179.7	180.0
N9	N10	C11	C14	80.5	139.7
N9	N10	C11	C20	260.7	320.0
C1	C12	N10	C13	180.8	180.4
N9	N10	C12	C11	180.6	180.3
C12	N10	C11	C14	261.2	320.0
C12	N10	C11	C20	81.3	140.3
N10	C12	C13	H131	235.6	90.1
N10	C12	C13	H132	0.9	210.0
N10	C12	C13	H133	126.2	330.0
N9	N10	C11	C12	179.4	179.7
C11	N10	C12	C13	359.2	359.7
C14	C11	N10	C20	179.8	179.7
N10	C11	C14	C15	180.2	179.7
N10	C11	C14	H14	0.2	0.3
N10	C11	C20	C19	179.7	180.0
N10	C11	C20	H20	359.7	360.0
C1	C12	C13	N10	179.1	179.5
C13	C12	N10	C11	359.2	359.7
H131	C13	C12	H132	234.7	240.1
H131	C13	C12	H133	109.4	120.1
H132	C13	C12	H133	234.7	240.0
C12	C13	H131	H132	137.8	119.9
C12	C13	H131	H133	248.9	239.9
H132	C13	H131	H133	111.1	120.0
C12	C13	H132	H131	234.8	240.1
C12	C13	H132	H133	125.3	120.0
H131	C13	H132	H133	250.5	240.0
C12	C13	H133	H131	111.1	120.0
C12	C13	H133	H132	222.1	240.0
H131	C13	H133	H132	111.1	120.0
N10	C11	C14	C20	180.2	180.3
C14	C11	C20	C19	359.9	0.3
C14	C11	C20	H20	179.9	180.3
C15	C14	C11	H14	180.0	179.5
C11	C14	C15	C16	0.1	0.5
C11	C14	C15	H15	180.1	180.3
N10	C11	C20	C14	179.8	179.7
C20	C11	C14	C15	0.0	359.4
C20	C11	C14	H14	180.0	180.0
C16	C19	C20	C11	0.1	0.0
C11	C20	C19	H19	180.1	180.0
C19	C20	C11	H20	180.0	180.0
C15	C14	C11	C20	0.0	359.4
C11	C14	C15	H14	180.0	180.5
C16	C15	C14	H15	180.0	180.3
C14	C15	C16	C19	359.8	359.8
C14	C15	C16	O17	179.5	179.7
H14	C14	C11	C20	180.0	180.0
C11	C14	H14	C15	180.0	179.5
H14	C14	C15	C16	180.1	180.0
H14	C14	C15	H15	0.1	359.7
C16	C15	C14	H14	180.1	180.0
C14	C15	C16	H15	180.0	179.7
C19	C16	C15	O17	180.4	180.1
C15	C16	C19	C20	0.1	359.9
C15	C16	C19	H19	180.0	180.0
C15	C16	O17	C18	270.7	0.0
H15	C15	C14	H14	0.1	359.7
C14	C15	H15	C16	180.0	180.3
H15	C15	C16	C19	179.8	180.0
H15	C15	C16	O17	359.5	360.0
C11	C20	C19	C16	0.1	0.0
C19	C16	C15	H15	179.8	180.0
C15	C16	C19	O17	179.7	179.9
C19	C16	O17	C18	90.4	180.0
C20	C19	C16	H19	180.0	180.0
C16	C19	C20	H20	180.1	180.0
O17	C16	C15	H15	359.5	360.0
C15	C16	O17	C19	180.3	180.1
O17	C16	C19	C20	180.4	180.0
O17	C16	C19	H19	0.3	0.0
C16	O17	C18	H181	54.8	180.0
C16	O17	C18	H182	180.0	300.0
C16	O17	C18	H183	305.3	59.9
C11	C20	C19	H20	180.0	180.0
C20	C19	C16	O17	180.4	180.0
C16	C19	C20	H19	180.0	180.0
H19	C19	C16	O17	0.3	0.0
C16	C19	H19	C20	180.0	180.0
H19	C19	C20	H20	0.1	360.0
C11	C20	H20	C19	180.0	180.0
H20	C20	C19	H19	0.1	360.0
H181	C18	O17	H182	234.8	240.0
H181	C18	O17	H183	109.5	120.1
H182	C18	O17	H183	234.7	240.1
O17	C18	H181	H182	129.0	120.0
O17	C18	H181	H183	244.5	239.9
H182	C18	H181	H183	115.5	120.0
O17	C18	H182	H181	234.8	240.0
O17	C18	H182	H183	125.3	120.0
H181	C18	H182	H183	250.5	240.0
O17	C18	H183	H181	115.5	120.1
O17	C18	H183	H182	230.9	240.1
H181	C18	H183	H182	115.5	120.0