Atom Nomenclature for 4BC

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 4BC

Atom Name (V3) Atom Name (V2)
C15 C15
C12 C12
O17 O17
C19 C19
O18 O18
C16 C16
C22 C22
C20 C20
C8 C8
C4 C4
C1 C1
C7 C7
O21 O21
O23 O23
N5 N5
C2 C2
N3 N3
C6 C6
C10 C10
C14 C14
C26 C26
C27 C27
C13 C13
O25 O25
C11 C11
C9 C9
O24 O24
H15 H15
H191 1H19
H192 2H19
H22 H22
H20 H20
H21 H21
HN5 HN5
H10 H10
H261 1H26
H262 2H26
H271 1H27
H272 2H27
H273 3H27
H25 H25
H11 H11
H24 H24