PDB Chemical Component 4AM

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 4AM

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	O1A	1.242	1.215
C1	O1B	1.249	1.347
C1	C2	1.401	1.474
O1B	HOB1	0.951	0.967
C2	C3	1.376	1.319
C2	O6	1.398	1.344
C3	C4	1.532	1.507
C3	H3	1.103	1.080
C4	N4	1.455	1.469
C4	C5	1.526	1.535
C4	H4	1.116	1.091
N4	HN41	1.020	1.010
N4	HN42	1.020	1.009
C5	N5	1.482	1.465
C5	C6	1.531	1.533
C5	H5	1.115	1.090
N5	C10	1.332	1.347
N5	HN5	1.021	0.970
C10	O10	1.237	1.212
C10	C11	1.534	1.507
C11	H111	1.115	1.089
C11	H112	1.115	1.091
C11	H113	1.114	1.090
C6	O6	1.408	1.422
C6	C7	1.529	1.529
C6	H6	1.115	1.090
C7	O7	1.411	1.429
C7	C8	1.520	1.530
C7	H7	1.115	1.090
O7	HO7	0.950	0.967
C8	O8	1.363	1.429
C8	C9	1.510	1.529
C8	H8	1.115	1.090
O8	HO8	0.950	0.967
C9	O9	1.377	1.429
C9	H91	1.114	1.090
C9	H92	1.114	1.090
O9	HO9	0.949	0.967

Bond Angles for 4AM

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O1A	C1	O1B	121.3	120.0
O1A	C1	C2	116.9	120.0
O1B	C1	C2	121.6	120.0
C1	O1B	HOB1	121.3	120.0
C1	C2	C3	122.5	116.8
C1	C2	O6	119.0	116.8
C3	C2	O6	118.5	126.5
C2	C3	C4	122.7	122.3
C2	C3	H3	113.0	118.9
C2	O6	C6	117.9	110.2
C4	C3	H3	124.2	118.9
C3	C4	N4	106.5	109.8
C3	C4	C5	110.6	108.1
C3	C4	H4	111.4	109.7
N4	C4	C5	111.6	109.8
N4	C4	H4	110.4	109.7
C4	N4	HN41	106.5	106.7
C4	N4	HN42	113.3	106.7
C5	C4	H4	106.3	109.7
C4	C5	N5	107.8	109.9
C4	C5	C6	108.9	107.5
C4	C5	H5	110.8	109.9
HN41	N4	HN42	113.3	106.7
N5	C5	C6	109.2	109.9
N5	C5	H5	110.6	109.7
C5	N5	C10	120.3	120.1
C5	N5	HN5	125.1	119.9
C6	C5	H5	109.5	109.9
C5	C6	O6	107.5	109.3
C5	C6	C7	112.3	109.7
C5	C6	H6	108.6	109.4
C10	N5	HN5	114.6	120.0
N5	C10	O10	122.9	120.0
N5	C10	C11	117.8	120.0
O10	C10	C11	119.3	120.0
C10	C11	H111	117.8	109.5
C10	C11	H112	109.2	109.5
C10	C11	H113	109.3	109.5
H111	C11	H112	109.2	109.4
H111	C11	H113	109.2	109.5
H112	C11	H113	100.9	109.4
O6	C6	C7	108.4	109.5
O6	C6	H6	112.5	109.5
C7	C6	H6	107.7	109.5
C6	C7	O7	109.8	109.4
C6	C7	C8	109.9	109.5
C6	C7	H7	109.2	109.5
O7	C7	C8	110.1	109.4
O7	C7	H7	108.9	109.4
C7	O7	HO7	109.8	106.8
C8	C7	H7	108.9	109.5
C7	C8	O8	101.9	109.4
C7	C8	C9	115.1	109.5
C7	C8	H8	110.2	109.5
O8	C8	C9	107.3	109.4
O8	C8	H8	117.6	109.4
C8	O8	HO8	101.9	106.8
C9	C8	H8	105.1	109.5
C8	C9	O9	111.4	109.5
C8	C9	H91	111.5	109.5
C8	C9	H92	111.5	109.5
O9	C9	H91	111.5	109.4
O9	C9	H92	111.5	109.5
C9	O9	HO9	111.4	106.8
H91	C9	H92	99.0	109.4

Torsion Angles for 4AM

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1B	C1	O1A	C2	184.2	180.0
O1A	C1	O1B	HOB1	180.0	360.0
O1A	C1	C2	C3	190.4	0.0
O1A	C1	C2	O6	9.5	180.0
O1A	C1	O1B	C2	175.6	180.0
O1B	C1	C2	C3	6.2	180.0
O1B	C1	C2	O6	185.3	360.0
O1A	C1	C2	O1B	184.2	180.0
C2	C1	O1B	HOB1	4.3	180.0
C3	C2	C1	O6	180.9	180.0
C1	C2	C3	C4	177.7	179.1
C1	C2	C3	H3	357.7	359.2
C1	C2	O6	C6	206.4	203.9
HOB1	O1B	C1	C2	4.3	180.0
C1	C2	C3	O6	179.1	180.0
C3	C2	O6	C6	25.5	23.9
C4	C3	C2	H3	180.0	180.0
C2	C3	C4	N4	133.5	131.7
C2	C3	C4	C5	12.0	11.9
C2	C3	C4	H4	254.0	252.3
C1	C2	O6	C3	180.9	180.0
O6	C2	C3	C4	358.6	359.2
O6	C2	C3	H3	178.6	179.2
C5	C6	O6	C2	302.8	303.1
C2	O6	C6	C7	181.2	183.0
C2	O6	C6	H6	62.2	62.9
C4	C3	C2	O6	358.6	359.2
C2	C3	C4	H3	180.0	180.0
N4	C4	C3	C5	121.5	119.7
N4	C4	C3	H4	239.5	239.3
C3	C4	N4	HN41	180.0	61.3
C3	C4	N4	HN42	54.7	175.0
C5	C4	C3	H4	118.1	119.6
C3	C4	C5	N5	199.4	197.7
C3	C4	C5	C6	317.7	317.4
C3	C4	C5	H5	78.2	76.9
H3	C3	C2	O6	178.6	179.2
C2	C3	H3	C4	180.0	180.0
H3	C3	C4	N4	313.5	311.6
H3	C3	C4	C5	192.0	191.9
H3	C3	C4	H4	74.0	72.3
N4	C4	C3	H3	313.5	311.6
C3	C4	N4	C5	239.2	241.3
C3	C4	N4	H4	121.1	120.7
C5	C4	N4	H4	242.0	239.4
N4	C4	C5	N5	81.0	78.0
N4	C4	C5	C6	199.3	197.6
N4	C4	C5	H5	319.8	317.2
HN41	N4	C4	HN42	125.2	246.3
C5	C4	C3	H3	192.0	191.9
C3	C4	C5	N4	118.4	119.7
C3	C4	C5	H4	238.9	240.4
N4	C4	C5	H4	120.5	120.6
C5	C4	N4	HN41	300.8	180.0
C5	C4	N4	HN42	175.6	293.7
N5	C5	C4	C6	241.7	240.4
N5	C5	C4	H5	121.2	120.8
C4	C5	N5	C10	250.6	269.1
C4	C5	N5	HN5	70.5	89.1
C6	C5	C4	H5	239.5	240.4
C4	C5	C6	O6	64.9	68.5
C4	C5	C6	C7	184.1	188.6
C4	C5	C6	H6	303.0	308.6
H4	C4	C3	H3	74.0	72.3
C3	C4	H4	N4	241.8	239.3
C3	C4	H4	C5	120.6	118.6
N4	C4	H4	C5	238.8	239.3
H4	C4	N4	HN41	58.8	300.6
H4	C4	N4	HN42	293.6	54.3
H4	C4	C5	N5	320.5	317.4
H4	C4	C5	C6	78.9	77.0
H4	C4	C5	H5	199.4	196.6
HN41	N4	C4	C5	300.8	180.0
HN41	N4	C4	H4	58.8	300.6
C4	N4	HN41	HN42	234.8	113.7
HN42	N4	C4	C5	175.6	293.7
HN42	N4	C4	H4	293.6	54.3
C4	N4	HN42	HN41	121.5	246.3
N5	C5	C4	H4	320.5	317.4
C4	C5	N5	C6	118.2	118.1
C4	C5	N5	H5	238.7	239.1
C6	C5	N5	H5	120.5	121.0
N5	C5	C6	O6	182.4	188.1
N5	C5	C6	C7	301.5	308.2
N5	C5	C6	H6	60.5	68.2
C10	N5	C5	HN5	180.1	180.0
C5	N5	C10	O10	357.7	360.0
C5	N5	C10	C11	179.0	180.0
C2	O6	C6	C5	302.8	303.1
C6	C5	C4	H4	78.9	77.0
C4	C5	C6	N5	242.5	240.4
C4	C5	C6	H5	121.3	119.5
N5	C5	C6	H5	238.8	239.1
C6	C5	N5	C10	132.4	151.0
C6	C5	N5	HN5	312.3	330.9
O6	C6	C5	C7	240.8	239.9
O6	C6	C5	H6	121.9	119.9
C7	C6	C5	H6	241.1	240.0
C5	C6	C7	O7	302.0	300.1
C5	C6	C7	C8	180.7	180.1
C5	C6	C7	H7	61.4	60.1
H5	C5	C4	H4	199.4	196.6
C4	C5	H5	N5	119.5	120.9
C4	C5	H5	C6	239.8	241.9
N5	C5	H5	C6	120.4	121.0
H5	C5	N5	C10	11.8	30.0
H5	C5	N5	HN5	191.8	210.0
H5	C5	C6	O6	303.6	309.0
H5	C5	C6	C7	62.8	69.0
H5	C5	C6	H6	181.7	189.1
C10	N5	C5	C6	132.4	151.0
C10	N5	C5	H5	11.8	30.0
C5	N5	C10	HN5	179.9	180.0
O10	C10	N5	C11	178.7	180.0
N5	C10	C11	H111	180.0	180.0
N5	C10	C11	H112	305.2	300.0
N5	C10	C11	H113	54.7	60.0
HN5	N5	C5	C6	312.3	330.9
HN5	N5	C5	H5	191.8	210.0
C5	N5	HN5	C10	180.1	180.0
HN5	N5	C10	O10	177.7	180.0
HN5	N5	C10	C11	359.0	0.0
O10	C10	N5	HN5	177.7	180.0
N5	C10	O10	C11	181.3	180.0
O10	C10	C11	H111	1.3	0.0
O10	C10	C11	H112	126.5	120.0
O10	C10	C11	H113	236.0	239.9
C11	C10	N5	HN5	359.0	0.0
N5	C10	C11	O10	178.7	180.0
H111	C11	C10	H112	234.8	240.0
H111	C11	C10	H113	125.3	120.1
H112	C11	C10	H113	250.5	240.1
C10	C11	H111	H112	125.2	120.0
C10	C11	H111	H113	234.7	239.9
H112	C11	H111	H113	109.4	119.9
C10	C11	H112	H111	229.9	240.0
C10	C11	H112	H113	115.0	120.0
H111	C11	H112	H113	245.1	240.0
C10	C11	H113	H111	130.1	120.1
C10	C11	H113	H112	245.0	240.0
H111	C11	H113	H112	114.9	119.9
O6	C6	C5	H5	303.6	309.0
C5	C6	O6	C7	121.6	120.1
C5	C6	O6	H6	240.6	240.2
C7	C6	O6	H6	119.0	120.1
O6	C6	C7	O7	60.6	60.0
O6	C6	C7	C8	299.3	300.0
O6	C6	C7	H7	180.0	180.0
C7	C6	C5	H5	62.8	69.0
C5	C6	C7	O6	241.4	240.1
C5	C6	C7	H6	119.5	120.0
O6	C6	C7	H6	238.1	239.9
O7	C7	C6	C8	121.3	120.0
O7	C7	C6	H7	240.6	240.0
C6	C7	O7	HO7	180.0	300.0
C8	C7	C6	H7	119.3	120.1
C6	C7	C8	O8	291.0	300.0
C6	C7	C8	C9	175.2	180.0
C6	C7	C8	H8	56.6	59.9
H6	C6	C5	H5	181.7	189.1
C5	C6	H6	O6	118.8	119.7
C5	C6	H6	C7	238.2	239.8
O6	C6	H6	C7	119.4	120.1
H6	C6	C7	O7	182.6	180.1
H6	C6	C7	C8	61.3	60.1
H6	C6	C7	H7	301.9	300.1
O7	C7	C6	H6	182.6	180.1
C6	C7	O7	C8	238.9	240.0
C6	C7	O7	H7	119.5	120.0
C8	C7	O7	H7	240.6	240.0
O7	C7	C8	O8	169.9	180.0
O7	C7	C8	C9	54.1	60.0
O7	C7	C8	H8	295.5	299.9
C8	C7	C6	H6	61.3	60.1
C6	C7	C8	O7	121.1	120.0
C6	C7	C8	H7	240.5	239.9
O7	C7	C8	H7	119.4	119.9
C8	C7	O7	HO7	301.1	60.0
O8	C8	C7	C9	115.7	120.0
O8	C8	C7	H8	234.4	240.1
C7	C8	O8	HO8	180.0	300.0
C9	C8	C7	H8	118.6	120.1
C7	C8	C9	O9	50.9	180.0
C7	C8	C9	H91	176.1	300.0
C7	C8	C9	H92	285.6	59.9
H7	C7	C6	H6	301.9	300.1
C6	C7	H7	O7	240.1	240.0
C6	C7	H7	C8	120.0	120.1
O7	C7	H7	C8	239.9	240.1
H7	C7	O7	HO7	60.5	180.0
H7	C7	C8	O8	50.5	60.1
H7	C7	C8	C9	294.7	300.1
H7	C7	C8	H8	176.1	180.0
HO7	O7	C7	C8	301.1	60.0
HO7	O7	C7	H7	60.5	180.0
O8	C8	C7	H7	50.5	60.1
C7	C8	O8	C9	238.7	240.0
C7	C8	O8	H8	120.5	120.0
C9	C8	O8	H8	241.8	240.0
O8	C8	C9	O9	298.3	60.1
O8	C8	C9	H91	63.5	180.0
O8	C8	C9	H92	173.0	300.0
C9	C8	C7	H7	294.7	300.1
C7	C8	C9	O8	112.6	120.0
C7	C8	C9	H8	238.6	239.9
O8	C8	C9	H8	126.0	120.0
C9	C8	O8	HO8	301.3	60.0
O9	C9	C8	H91	234.8	240.1
O9	C9	C8	H92	125.2	120.1
C8	C9	O9	HO9	180.0	180.0
H91	C9	C8	H92	250.4	240.0
H8	C8	C7	H7	176.1	180.0
C7	C8	H8	O8	243.9	240.1
C7	C8	H8	C9	124.6	120.1
O8	C8	H8	C9	240.7	240.0
H8	C8	O8	HO8	59.5	180.0
H8	C8	C9	O9	172.3	300.1
H8	C8	C9	H91	297.5	60.0
H8	C8	C9	H92	47.0	180.0
HO8	O8	C8	C9	301.3	60.0
HO8	O8	C8	H8	59.5	180.0
O9	C9	C8	H8	172.3	300.1
C8	C9	O9	H91	125.2	120.0
C8	C9	O9	H92	234.8	239.9
H91	C9	O9	H92	109.6	119.9
H91	C9	C8	H8	297.5	60.0
C8	C9	H91	O9	234.8	240.0
C8	C9	H91	H92	117.4	120.0
O9	C9	H91	H92	242.6	240.0
H91	C9	O9	HO9	54.8	60.0
H92	C9	C8	H8	47.0	180.0
C8	C9	H92	O9	125.2	120.1
C8	C9	H92	H91	242.6	240.0
O9	C9	H92	H91	117.4	119.9
H92	C9	O9	HO9	305.2	300.1
HO9	O9	C9	H91	54.8	60.0
HO9	O9	C9	H92	305.2	300.1