Atom Nomenclature for 4AH

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 4AH

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
O3 O3
N4 N4
C5 C5
C6 C6
C7 C7
C8 C8
C9 C9
C10 C10
C11 C11
C12 C12
C13 C13
O14 O14
C24 C24
C25 C25
C26 C26
C27 C27
C28 C28
C29 C29
C30 C30
O36 O36
C41 C41
N42 N42
N43 N43
C44 C44
C45 C45
O46 O46
C47 C47
C48 C48
C49 C49
C50 C50
N51 N51
C54 C54
O55 O55
O56 O56
C78 C78
C79 C79
C80 C80
C81 C81
C82 C82
C83 C83
C91 C91
C92 C92
C93 C93
C94 C94
C95 C95
C96 C96
N97 N97
C98 C98
H4 H4
H5 H5
H7 H7
H8 H8
H9 H9
H10 H10
H121 1H12
H122 2H12
H13 H13
H14 H14
H241 1H24
H242 2H24
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H36 H36
H411 1H41
H412 2H41
H43 H43
H441 1H44
H442 2H44
H47 H47
H491 1H49
H492 2H49
H493 3H49
H501 1H50
H502 2H50
H503 3H50
H51 H51
H79 H79
H80 H80
H82 H82
H83 H83
H911 1H91
H912 2H91
H913 3H91
H921 1H92
H922 2H92
H923 3H92
H93 H93
H94 H94
H96 H96
H98 H98