Atom Nomenclature for 4A2

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 4A2

Atom Name (V3) Atom Name (V2)
FAA FAA
CAC CAC
FAB FAB
FAG FAG
CAD CAD
CAE CAE
CAF CAF
CAK CAK
CAJ CAJ
CAI CAI
CAH CAH
NAP NAP
CAO CAO
CAN CAN
CAM CAM
CAW CAW
CAV CAV
OAL OAL
OBG OBG
CAX CAX
CAY CAY
NAZ NAZ
CBA CBA
NBB NBB
CBC CBC
CBD CBD
CBE CBE
FBF FBF
CAS CAS
OAT OAT
CAU CAU
CAR CAR
CAQ CAQ
HAE HAE
HAF HAF
HAK HAK
HAJ HAJ
HAH1 HAH1
HAH2 HAH2
HAN HAN
HAM HAM
HAX HAX
HAL HAL
HAZ HAZ
HBD HBD
HAQ HAQ
HAR HAR
HAU1 HAU1
HAU2 HAU2
HAU3 HAU3