PDB Chemical Component 49U
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 49U
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2 |
C3 |
1.510 |
1.552 |
| C2 |
C1 |
1.514 |
1.543 |
| C24 |
N23 |
1.416 |
1.466 |
| C24 |
C25 |
1.478 |
1.506 |
| N23 |
C7 |
1.299 |
1.348 |
| C3 |
C4 |
1.514 |
1.549 |
| C26 |
C25 |
1.392 |
1.384 |
| C26 |
C27 |
1.397 |
1.379 |
| C7 |
O22 |
1.219 |
1.213 |
| C7 |
C1 |
1.495 |
1.507 |
| C1 |
N1 |
1.457 |
1.470 |
| C25 |
C30 |
1.361 |
1.384 |
| C27 |
C28 |
1.389 |
1.394 |
| C4 |
N1 |
1.475 |
1.474 |
| N1 |
C14 |
1.329 |
1.348 |
| C30 |
C29 |
1.390 |
1.380 |
| C28 |
C29 |
1.379 |
1.395 |
| C28 |
C9 |
1.502 |
1.481 |
| C14 |
O32 |
1.226 |
1.213 |
| C14 |
C5 |
1.485 |
1.507 |
| N47 |
C9 |
1.323 |
1.378 |
| C9 |
N46 |
1.325 |
1.303 |
| C5 |
C21 |
1.496 |
1.530 |
| C45 |
C44 |
1.560 |
1.542 |
| C45 |
C47 |
1.559 |
1.549 |
| C44 |
C21 |
1.530 |
1.530 |
| C44 |
C49 |
1.550 |
1.539 |
| C47 |
C48 |
1.527 |
1.548 |
| C48 |
C49 |
1.538 |
1.543 |
| N23 |
HN23 |
1.000 |
0.970 |
| C24 |
H24 |
1.100 |
1.090 |
| C24 |
H24A |
1.100 |
1.090 |
| C26 |
H26 |
1.080 |
1.080 |
| C27 |
H27 |
1.080 |
1.081 |
| N46 |
HN46 |
1.000 |
0.970 |
| N47 |
HN47 |
1.000 |
0.970 |
| N47 |
HN4A |
1.001 |
0.970 |
| C29 |
H29 |
1.080 |
1.080 |
| C30 |
H30 |
1.080 |
1.080 |
| C1 |
H1 |
1.100 |
1.090 |
| C2 |
H2 |
1.101 |
1.091 |
| C2 |
H2A |
1.101 |
1.090 |
| C3 |
H3 |
1.100 |
1.090 |
| C3 |
H3A |
1.100 |
1.090 |
| C4 |
H4 |
1.100 |
1.089 |
| C4 |
H4A |
1.100 |
1.091 |
| C5 |
H5 |
1.100 |
1.090 |
| C5 |
H5A |
1.100 |
1.089 |
| C21 |
H21 |
1.100 |
1.091 |
| C21 |
H21A |
1.100 |
1.090 |
| C44 |
H44 |
1.100 |
1.090 |
| C49 |
H49 |
1.100 |
1.090 |
| C49 |
H49A |
1.100 |
1.089 |
| C48 |
H48 |
1.100 |
1.091 |
| C48 |
H48A |
1.100 |
1.090 |
| C47 |
H47 |
1.100 |
1.090 |
| C47 |
H47A |
1.100 |
1.090 |
| C45 |
H45 |
1.100 |
1.091 |
| C45 |
H45A |
1.100 |
1.090 |
Bond Angles for 49U
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C3 |
C4 |
101.6 |
101.6 |
| C3 |
C2 |
H2 |
109.0 |
110.7 |
| C3 |
C2 |
H2A |
108.7 |
110.7 |
| C2 |
C3 |
H3 |
112.2 |
111.0 |
| C2 |
C3 |
H3A |
113.8 |
111.0 |
| C2 |
C1 |
H1 |
115.5 |
110.0 |
| C24 |
N23 |
HN23 |
116.1 |
120.0 |
| C24 |
C25 |
C30 |
123.3 |
119.9 |
| C25 |
C24 |
H24 |
108.1 |
109.5 |
| C25 |
C24 |
H24A |
107.1 |
109.5 |
| C4 |
C3 |
H3 |
112.2 |
111.0 |
| C4 |
C3 |
H3A |
113.8 |
111.0 |
| C3 |
C4 |
H4 |
110.8 |
110.4 |
| C3 |
C4 |
H4A |
111.6 |
110.4 |
| C26 |
C27 |
H27 |
119.1 |
120.0 |
| C7 |
C1 |
H1 |
102.9 |
109.9 |
| C25 |
C30 |
C29 |
120.1 |
120.2 |
| C25 |
C30 |
H30 |
119.9 |
119.9 |
| C30 |
C29 |
H29 |
118.9 |
120.1 |
| C29 |
C30 |
H30 |
119.9 |
119.9 |
| C28 |
C29 |
H29 |
118.9 |
120.1 |
| C28 |
C9 |
N46 |
120.1 |
120.0 |
| C14 |
C5 |
H5 |
108.4 |
109.5 |
| C14 |
C5 |
H5A |
107.7 |
109.5 |
| C9 |
N46 |
HN46 |
108.5 |
120.0 |
| C5 |
C21 |
H21 |
110.2 |
109.4 |
| C5 |
C21 |
H21A |
110.8 |
109.5 |
| C45 |
C44 |
C21 |
117.6 |
110.0 |
| C45 |
C44 |
C49 |
103.7 |
106.6 |
| C45 |
C44 |
H44 |
107.1 |
110.1 |
| C44 |
C45 |
H45 |
110.9 |
110.5 |
| C44 |
C45 |
H45A |
111.7 |
110.5 |
| C45 |
C47 |
C48 |
108.4 |
102.7 |
| C45 |
C47 |
H47 |
109.8 |
110.7 |
| C45 |
C47 |
H47A |
110.1 |
110.9 |
| C49 |
C44 |
C21 |
106.4 |
110.0 |
| C44 |
C21 |
H21 |
110.3 |
109.4 |
| C44 |
C21 |
H21A |
110.8 |
109.5 |
| C21 |
C44 |
H44 |
104.4 |
110.0 |
| C49 |
C44 |
H44 |
118.2 |
110.0 |
| C44 |
C49 |
H49 |
110.7 |
110.0 |
| C44 |
C49 |
H49A |
111.5 |
110.1 |
| C47 |
C48 |
C49 |
105.2 |
104.2 |
| C47 |
C48 |
H48 |
110.9 |
110.5 |
| C47 |
C48 |
H48A |
111.8 |
110.6 |
| C48 |
C47 |
H47 |
109.9 |
110.8 |
| C48 |
C47 |
H47A |
110.1 |
110.8 |
| C48 |
C49 |
H49 |
110.7 |
110.0 |
| C48 |
C49 |
H49A |
111.5 |
110.0 |
| H24 |
C24 |
H24A |
112.9 |
109.5 |
| HN47 |
N47 |
HN4A |
125.7 |
120.0 |
| H2 |
C2 |
H2A |
110.6 |
110.8 |
| H3 |
C3 |
H3A |
103.6 |
110.9 |
| H4 |
C4 |
H4A |
106.5 |
110.4 |
| H5 |
C5 |
H5A |
111.9 |
109.5 |
| H21 |
C21 |
H21A |
107.7 |
109.5 |
| H49 |
C49 |
H49A |
106.7 |
110.1 |
| H48 |
C48 |
H48A |
106.2 |
110.4 |
| H47 |
C47 |
H47A |
108.6 |
110.7 |
| H45 |
C45 |
H45A |
106.4 |
110.5 |
Torsion Angles for 49U
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C3 |
C2 |
C1 |
H1 |
101.0 |
97.3 |
| C4 |
C3 |
C2 |
H3 |
240.0 |
241.9 |
| C4 |
C3 |
C2 |
H3A |
122.8 |
118.0 |
| C2 |
C3 |
C4 |
H4 |
97.5 |
81.9 |
| C2 |
C3 |
C4 |
H4A |
216.0 |
204.2 |
| H2 |
C2 |
C3 |
H2A |
239.4 |
123.2 |
| H3 |
C3 |
C2 |
H3A |
242.8 |
236.1 |
| C7 |
C1 |
C2 |
H1 |
116.8 |
121.1 |
| C25 |
C24 |
N23 |
HN23 |
286.9 |
0.0 |
| C24 |
C25 |
C30 |
C29 |
180.0 |
179.7 |
| C24 |
C25 |
C30 |
H30 |
0.0 |
0.0 |
| H24 |
C24 |
C25 |
H24A |
121.9 |
120.1 |
| N23 |
C7 |
C1 |
H1 |
17.2 |
58.7 |
| C4 |
C3 |
C2 |
H2 |
147.9 |
277.1 |
| C4 |
C3 |
C2 |
H2A |
268.5 |
153.9 |
| C2 |
C3 |
C4 |
H3 |
120.0 |
118.1 |
| C2 |
C3 |
C4 |
H3A |
237.2 |
241.9 |
| H3 |
C3 |
C4 |
H3A |
117.2 |
123.8 |
| H4 |
C4 |
C3 |
H4A |
241.5 |
237.7 |
| C26 |
C25 |
C24 |
H24 |
6.0 |
150.3 |
| C26 |
C25 |
C24 |
H24A |
244.1 |
30.3 |
| C26 |
C25 |
C30 |
H30 |
180.0 |
179.7 |
| O22 |
C7 |
C1 |
H1 |
198.9 |
238.9 |
| C2 |
C1 |
C7 |
H1 |
235.7 |
238.9 |
| C30 |
C25 |
C24 |
H24 |
186.0 |
330.0 |
| C30 |
C25 |
C24 |
H24A |
64.1 |
209.9 |
| C25 |
C30 |
C29 |
H29 |
179.9 |
180.3 |
| C29 |
C30 |
C25 |
H30 |
180.0 |
179.7 |
| C27 |
C28 |
C29 |
H29 |
180.1 |
180.0 |
| N1 |
C14 |
C5 |
H5 |
242.2 |
299.9 |
| N1 |
C14 |
C5 |
H5A |
3.5 |
60.0 |
| C25 |
C30 |
C29 |
H30 |
180.0 |
180.3 |
| C28 |
C29 |
C30 |
H29 |
180.0 |
180.3 |
| C30 |
C29 |
C28 |
H29 |
180.0 |
179.7 |
| C28 |
C29 |
C30 |
H30 |
179.9 |
180.3 |
| C9 |
C28 |
C29 |
H29 |
0.0 |
359.9 |
| C28 |
C9 |
N46 |
HN46 |
0.0 |
0.0 |
| O32 |
C14 |
C5 |
H5 |
62.0 |
120.0 |
| O32 |
C14 |
C5 |
H5A |
183.3 |
240.0 |
| C14 |
C5 |
C21 |
H21 |
46.8 |
300.0 |
| C14 |
C5 |
C21 |
H21A |
165.9 |
59.9 |
| H5 |
C5 |
C14 |
H5A |
238.7 |
239.9 |
| N47 |
C9 |
N46 |
HN46 |
179.9 |
180.0 |
| C44 |
C21 |
C5 |
H21 |
240.0 |
240.0 |
| C44 |
C21 |
C5 |
H21A |
120.9 |
120.0 |
| C5 |
C21 |
C44 |
H44 |
56.0 |
53.6 |
| H21 |
C21 |
C5 |
H21A |
240.9 |
240.0 |
| C44 |
C45 |
C47 |
C48 |
8.1 |
37.9 |
| C44 |
C45 |
C47 |
H47 |
128.1 |
279.6 |
| C44 |
C45 |
C47 |
H47A |
247.7 |
156.3 |
| C49 |
C44 |
C45 |
C21 |
117.2 |
119.3 |
| C45 |
C44 |
C21 |
H21 |
177.5 |
172.2 |
| C45 |
C44 |
C21 |
H21A |
58.4 |
52.2 |
| C21 |
C44 |
C45 |
H44 |
117.1 |
121.4 |
| C49 |
C44 |
C45 |
H44 |
234.3 |
240.7 |
| C45 |
C44 |
C49 |
H49 |
154.4 |
119.2 |
| C45 |
C44 |
C49 |
H49A |
273.0 |
240.7 |
| H45 |
C45 |
C44 |
H45A |
241.5 |
237.4 |
| C45 |
C47 |
C48 |
C49 |
13.0 |
322.1 |
| C45 |
C47 |
C48 |
H48 |
133.0 |
203.4 |
| C45 |
C47 |
C48 |
H48A |
251.5 |
80.8 |
| C48 |
C47 |
C45 |
H47 |
240.0 |
118.3 |
| C48 |
C47 |
C45 |
H47A |
120.4 |
241.6 |
| H47 |
C47 |
C45 |
H47A |
240.5 |
123.3 |
| C5 |
C21 |
C44 |
H21 |
120.0 |
120.0 |
| C5 |
C21 |
C44 |
H21A |
239.1 |
239.9 |
| C45 |
C44 |
C21 |
C49 |
115.7 |
117.2 |
| C45 |
C44 |
C21 |
H44 |
241.5 |
238.5 |
| C21 |
C44 |
C45 |
H45 |
337.1 |
335.8 |
| C21 |
C44 |
C45 |
H45A |
95.6 |
98.4 |
| C49 |
C44 |
C21 |
H44 |
125.8 |
121.4 |
| C21 |
C44 |
C49 |
H49 |
279.1 |
238.5 |
| C21 |
C44 |
C49 |
H49A |
37.8 |
360.0 |
| H21 |
C21 |
C44 |
H21A |
119.1 |
120.0 |
| C45 |
C44 |
C49 |
C21 |
235.3 |
240.7 |
| C45 |
C44 |
C49 |
H44 |
118.3 |
119.4 |
| C49 |
C44 |
C45 |
H45 |
94.2 |
95.1 |
| C49 |
C44 |
C45 |
H45A |
212.7 |
217.7 |
| C49 |
C44 |
C21 |
H21 |
61.8 |
55.0 |
| C49 |
C44 |
C21 |
H21A |
302.7 |
295.0 |
| C21 |
C44 |
C49 |
H44 |
243.1 |
238.6 |
| C47 |
C48 |
C49 |
C44 |
330.5 |
23.6 |
| C48 |
C49 |
C44 |
H49 |
240.0 |
240.8 |
| C48 |
C49 |
C44 |
H49A |
121.4 |
119.3 |
| H49 |
C49 |
C44 |
H49A |
241.4 |
238.5 |
| C45 |
C47 |
C48 |
H47 |
120.0 |
241.7 |
| C45 |
C47 |
C48 |
H47A |
239.6 |
118.5 |
| C47 |
C48 |
C49 |
H49 |
210.4 |
264.4 |
| C47 |
C48 |
C49 |
H49A |
91.9 |
142.9 |
| H48 |
C48 |
C47 |
H48A |
241.6 |
122.6 |
| H47 |
C47 |
C48 |
H47A |
119.6 |
236.8 |
| C48 |
C49 |
C44 |
C21 |
159.1 |
119.3 |
| C48 |
C49 |
C44 |
H44 |
276.1 |
240.6 |
| C44 |
C49 |
C48 |
H49 |
120.0 |
119.2 |
| C44 |
C49 |
C48 |
H49A |
238.6 |
240.7 |
| C47 |
C48 |
C49 |
H48 |
120.0 |
241.3 |
| C47 |
C48 |
C49 |
H48A |
238.4 |
118.8 |
| C49 |
C48 |
C47 |
H47 |
253.0 |
80.4 |
| C49 |
C48 |
C47 |
H47A |
133.5 |
203.6 |
| H49 |
C49 |
C48 |
H49A |
118.6 |
121.4 |
| H24 |
C24 |
N23 |
HN23 |
46.9 |
120.1 |
| H24 |
C24 |
C25 |
C30 |
186.0 |
330.0 |
| C25 |
C24 |
H24 |
H24A |
241.7 |
240.0 |
| H24A |
C24 |
N23 |
HN23 |
168.8 |
240.1 |
| H24A |
C24 |
C25 |
C30 |
64.1 |
209.9 |
| C25 |
C24 |
H24A |
H24 |
118.8 |
120.1 |
| H26 |
C26 |
C27 |
H27 |
360.0 |
360.0 |
| H29 |
C29 |
C30 |
H30 |
359.9 |
0.0 |
| C25 |
C30 |
H30 |
C29 |
180.0 |
179.7 |
| H30 |
C30 |
C29 |
H29 |
359.9 |
0.0 |
| H2 |
C2 |
C3 |
C4 |
147.9 |
277.1 |
| C3 |
C2 |
H2 |
H2A |
119.4 |
236.8 |
| H2 |
C2 |
C3 |
H3 |
268.0 |
35.2 |
| H2 |
C2 |
C3 |
H3A |
25.2 |
159.1 |
| H2 |
C2 |
C1 |
H1 |
340.9 |
215.7 |
| H2A |
C2 |
C3 |
C4 |
268.5 |
153.9 |
| C3 |
C2 |
H2A |
H2 |
240.4 |
123.2 |
| H2A |
C2 |
C3 |
H3 |
28.6 |
272.0 |
| H2A |
C2 |
C3 |
H3A |
145.8 |
35.8 |
| H2A |
C2 |
C1 |
H1 |
220.4 |
339.0 |
| C2 |
C3 |
H3 |
C4 |
246.3 |
247.8 |
| H3 |
C3 |
C2 |
H2 |
268.0 |
35.2 |
| H3 |
C3 |
C2 |
H2A |
28.6 |
272.0 |
| C2 |
C3 |
H3 |
H3A |
123.2 |
123.9 |
| C4 |
C3 |
H3 |
H3A |
236.8 |
236.1 |
| H3 |
C3 |
C4 |
H4 |
337.5 |
323.7 |
| H3 |
C3 |
C4 |
H4A |
96.0 |
86.1 |
| C2 |
C3 |
H3A |
C4 |
115.8 |
112.2 |
| H3A |
C3 |
C2 |
H2 |
25.2 |
159.1 |
| H3A |
C3 |
C2 |
H2A |
145.8 |
35.8 |
| C2 |
C3 |
H3A |
H3 |
237.9 |
236.0 |
| C4 |
C3 |
H3A |
H3 |
122.1 |
123.9 |
| H3A |
C3 |
C4 |
H4 |
220.3 |
199.9 |
| H3A |
C3 |
C4 |
H4A |
338.8 |
322.2 |
| H4 |
C4 |
C3 |
H3 |
337.5 |
323.7 |
| H4 |
C4 |
C3 |
H3A |
220.3 |
199.9 |
| C3 |
C4 |
H4 |
H4A |
121.6 |
122.3 |
| H4A |
C4 |
C3 |
H3 |
96.0 |
86.1 |
| H4A |
C4 |
C3 |
H3A |
338.8 |
322.2 |
| C3 |
C4 |
H4A |
H4 |
239.0 |
237.7 |
| C14 |
C5 |
H5 |
H5A |
118.7 |
120.1 |
| H5 |
C5 |
C21 |
H21 |
286.8 |
180.0 |
| H5 |
C5 |
C21 |
H21A |
45.9 |
300.0 |
| C14 |
C5 |
H5A |
H5 |
240.9 |
239.9 |
| H5A |
C5 |
C21 |
H21 |
165.5 |
60.0 |
| H5A |
C5 |
C21 |
H21A |
284.5 |
180.0 |
| C5 |
C21 |
H21 |
H21A |
120.9 |
120.0 |
| C44 |
C21 |
H21 |
H21A |
239.0 |
240.0 |
| H21 |
C21 |
C44 |
H44 |
296.0 |
293.6 |
| C5 |
C21 |
H21A |
H21 |
239.4 |
240.0 |
| C44 |
C21 |
H21A |
H21 |
120.6 |
120.0 |
| H21A |
C21 |
C44 |
H44 |
176.9 |
173.6 |
| C45 |
C44 |
H44 |
C21 |
125.5 |
121.4 |
| C45 |
C44 |
H44 |
C49 |
243.5 |
242.8 |
| H44 |
C44 |
C45 |
H45 |
220.0 |
214.4 |
| H44 |
C44 |
C45 |
H45A |
338.5 |
337.0 |
| C49 |
C44 |
H44 |
C21 |
242.0 |
238.6 |
| H44 |
C44 |
C21 |
H21 |
296.0 |
293.6 |
| H44 |
C44 |
C21 |
H21A |
176.9 |
173.6 |
| H44 |
C44 |
C49 |
H49 |
36.1 |
359.9 |
| H44 |
C44 |
C49 |
H49A |
154.7 |
121.3 |
| H49 |
C49 |
C44 |
C21 |
279.1 |
238.5 |
| H49 |
C49 |
C44 |
H44 |
36.1 |
359.9 |
| C44 |
C49 |
H49 |
H49A |
121.5 |
121.5 |
| C48 |
C49 |
H49 |
H49A |
238.6 |
238.6 |
| H49A |
C49 |
C44 |
C21 |
37.8 |
360.0 |
| H49A |
C49 |
C44 |
H44 |
154.7 |
121.3 |
| C44 |
C49 |
H49A |
H49 |
239.0 |
238.6 |
| C48 |
C49 |
H49A |
H49 |
120.9 |
121.4 |
| C47 |
C48 |
H48 |
C49 |
243.4 |
114.8 |
| C47 |
C48 |
H48 |
H48A |
121.7 |
237.3 |
| H48 |
C48 |
C47 |
H47 |
13.0 |
321.7 |
| H48 |
C48 |
C47 |
H47A |
253.5 |
84.9 |
| H48 |
C48 |
C49 |
H49 |
90.4 |
23.1 |
| H48 |
C48 |
C49 |
H49A |
331.9 |
261.6 |
| C47 |
C48 |
H48A |
C49 |
117.7 |
245.1 |
| C47 |
C48 |
H48A |
H48 |
238.8 |
122.6 |
| H48A |
C48 |
C47 |
H47 |
131.4 |
199.1 |
| H48A |
C48 |
C47 |
H47A |
11.9 |
322.4 |
| H48A |
C48 |
C49 |
H49 |
332.1 |
145.5 |
| H48A |
C48 |
C49 |
H49A |
213.5 |
24.1 |
| C45 |
C47 |
H47 |
C48 |
240.9 |
113.3 |
| C45 |
C47 |
H47 |
H47A |
120.4 |
236.6 |
| H47 |
C47 |
C48 |
C49 |
253.0 |
80.4 |
| H47 |
C47 |
C48 |
H48 |
13.0 |
321.7 |
| H47 |
C47 |
C48 |
H48A |
131.4 |
199.1 |
| C48 |
C47 |
H47 |
H47A |
239.5 |
123.3 |
| C45 |
C47 |
H47A |
C48 |
119.4 |
246.6 |
| C45 |
C47 |
H47A |
H47 |
239.7 |
123.3 |
| H47A |
C47 |
C48 |
C49 |
133.5 |
203.6 |
| H47A |
C47 |
C48 |
H48 |
253.5 |
84.9 |
| H47A |
C47 |
C48 |
H48A |
11.9 |
322.4 |
| C48 |
C47 |
H47A |
H47 |
120.3 |
236.7 |
| H45 |
C45 |
C44 |
C21 |
337.1 |
335.8 |
| H45 |
C45 |
C44 |
C49 |
94.2 |
95.1 |
| H45 |
C45 |
C44 |
H44 |
220.0 |
214.4 |
| C44 |
C45 |
H45 |
H45A |
121.7 |
122.6 |
| H45 |
C45 |
C47 |
C48 |
248.1 |
279.2 |
| H45 |
C45 |
C47 |
H47 |
8.1 |
160.9 |
| H45 |
C45 |
C47 |
H47A |
127.7 |
37.6 |
| H45A |
C45 |
C44 |
C21 |
95.6 |
98.4 |
| H45A |
C45 |
C44 |
C49 |
212.7 |
217.7 |
| H45A |
C45 |
C44 |
H44 |
338.5 |
337.0 |
| C44 |
C45 |
H45A |
H45 |
238.9 |
237.4 |
| H45A |
C45 |
C47 |
C48 |
129.6 |
156.7 |
| H45A |
C45 |
C47 |
H47 |
249.7 |
38.4 |
| H45A |
C45 |
C47 |
H47A |
9.2 |
275.1 |