PDB Chemical Component 491
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 491
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O20 |
P17 |
1.507 |
1.481 |
| O6 |
C6 |
1.409 |
1.429 |
| O5 |
C1 |
1.499 |
1.429 |
| O5 |
C5 |
1.458 |
1.429 |
| O7 |
C7 |
1.216 |
1.213 |
| O19 |
P17 |
1.509 |
1.609 |
| P17 |
O18 |
1.514 |
1.610 |
| P17 |
O1 |
1.562 |
1.610 |
| C6 |
C5 |
1.499 |
1.530 |
| C1 |
O1 |
1.352 |
1.429 |
| C1 |
C2 |
1.506 |
1.530 |
| C5 |
C4 |
1.512 |
1.531 |
| C7 |
C8 |
1.558 |
1.507 |
| C7 |
N2 |
1.456 |
1.347 |
| C2 |
N2 |
1.485 |
1.465 |
| C2 |
C3 |
1.461 |
1.532 |
| C4 |
C3 |
1.497 |
1.531 |
| C4 |
O4 |
1.415 |
1.429 |
| C3 |
O3 |
1.478 |
1.429 |
| O3 |
C02 |
1.435 |
1.429 |
| C02 |
C03 |
1.473 |
1.507 |
| C02 |
C01 |
1.514 |
1.530 |
| C03 |
O05 |
1.258 |
1.208 |
| C03 |
O04 |
1.249 |
1.343 |
| C01 |
H1A |
1.100 |
1.090 |
| C01 |
H2A |
1.100 |
1.090 |
| C01 |
H3A |
1.100 |
1.090 |
| C02 |
H4A |
1.100 |
1.090 |
| O04 |
H5A |
0.950 |
0.966 |
| C3 |
H3 |
1.100 |
1.090 |
| C2 |
H2 |
1.100 |
1.090 |
| C1 |
H1 |
1.100 |
1.090 |
| C5 |
H5 |
1.100 |
1.090 |
| C4 |
H4 |
1.100 |
1.090 |
| O4 |
HO4 |
0.950 |
0.967 |
| C6 |
H61 |
1.100 |
1.090 |
| C6 |
H62 |
1.100 |
1.091 |
| O6 |
HO6 |
0.950 |
0.967 |
| O18 |
H15 |
0.950 |
0.968 |
| O19 |
H16 |
0.950 |
0.967 |
| N2 |
HN2 |
1.000 |
0.971 |
| C8 |
H81 |
1.100 |
1.090 |
| C8 |
H82 |
1.100 |
1.090 |
| C8 |
H83 |
1.100 |
1.091 |
Bond Angles for 491
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O6 |
C6 |
H61 |
110.0 |
109.5 |
| O6 |
C6 |
H62 |
110.0 |
109.5 |
| O5 |
C1 |
O1 |
110.0 |
109.5 |
| O5 |
C1 |
H1 |
108.4 |
109.5 |
| O5 |
C5 |
C4 |
113.6 |
109.5 |
| O5 |
C5 |
H5 |
109.0 |
109.5 |
| O7 |
C7 |
C8 |
119.9 |
120.0 |
| P17 |
O18 |
H15 |
109.5 |
114.0 |
| C6 |
C5 |
H5 |
108.5 |
109.5 |
| O1 |
C1 |
H1 |
110.4 |
109.4 |
| C1 |
C2 |
N2 |
111.8 |
109.6 |
| C1 |
C2 |
H2 |
108.3 |
109.6 |
| C5 |
C4 |
O4 |
109.5 |
109.5 |
| C4 |
C5 |
H5 |
108.4 |
109.4 |
| C5 |
C4 |
H4 |
108.4 |
109.6 |
| C7 |
C8 |
H81 |
109.5 |
109.4 |
| C7 |
C8 |
H82 |
109.5 |
109.5 |
| C7 |
C8 |
H83 |
109.5 |
109.5 |
| C7 |
N2 |
HN2 |
119.4 |
120.0 |
| N2 |
C2 |
H2 |
108.5 |
109.5 |
| C2 |
N2 |
HN2 |
119.3 |
120.0 |
| C2 |
C3 |
H3 |
108.9 |
109.5 |
| C4 |
C3 |
H3 |
108.4 |
109.6 |
| O4 |
C4 |
H4 |
109.7 |
109.6 |
| C4 |
O4 |
HO4 |
109.5 |
114.0 |
| O3 |
C02 |
H4A |
109.9 |
109.4 |
| C02 |
C03 |
O05 |
120.2 |
120.1 |
| C02 |
C03 |
O04 |
119.8 |
120.0 |
| C03 |
C02 |
H4A |
109.3 |
109.5 |
| C02 |
C01 |
H1A |
109.5 |
109.5 |
| C02 |
C01 |
H2A |
109.5 |
109.5 |
| C02 |
C01 |
H3A |
109.5 |
109.4 |
| O04 |
C03 |
O05 |
120.0 |
119.9 |
| C03 |
O04 |
H5A |
109.5 |
117.0 |
| H1A |
C01 |
H2A |
109.4 |
109.5 |
| H1A |
C01 |
H3A |
109.4 |
109.4 |
| H2A |
C01 |
H3A |
109.5 |
109.4 |
| H61 |
C6 |
H62 |
109.5 |
109.4 |
| H81 |
C8 |
H82 |
109.4 |
109.5 |
| H81 |
C8 |
H83 |
109.5 |
109.5 |
| H82 |
C8 |
H83 |
109.5 |
109.5 |
Torsion Angles for 491
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O20 |
P17 |
O18 |
H15 |
360.0 |
180.0 |
| O6 |
C6 |
C5 |
H5 |
302.9 |
305.0 |
| H61 |
C6 |
O6 |
H62 |
239.3 |
119.9 |
| O1 |
C1 |
O5 |
H1 |
239.2 |
240.0 |
| O5 |
C1 |
C2 |
N2 |
179.5 |
177.5 |
| O5 |
C1 |
C2 |
H2 |
299.0 |
297.7 |
| C5 |
O5 |
C1 |
O1 |
71.2 |
58.8 |
| C5 |
O5 |
C1 |
H1 |
192.0 |
178.8 |
| C6 |
C5 |
O5 |
H5 |
242.5 |
240.0 |
| O5 |
C5 |
C4 |
O4 |
188.0 |
182.5 |
| C4 |
C5 |
O5 |
H5 |
120.9 |
120.0 |
| O5 |
C5 |
C4 |
H4 |
68.3 |
62.3 |
| O7 |
C7 |
C8 |
H81 |
0.0 |
180.0 |
| O7 |
C7 |
C8 |
H82 |
120.0 |
300.0 |
| O7 |
C7 |
C8 |
H83 |
240.0 |
60.0 |
| O7 |
C7 |
N2 |
HN2 |
179.3 |
180.0 |
| O19 |
P17 |
O18 |
H15 |
119.3 |
300.0 |
| P17 |
O1 |
C1 |
H1 |
295.3 |
330.0 |
| O5 |
C5 |
C6 |
H5 |
117.8 |
120.0 |
| C4 |
C5 |
C6 |
H5 |
241.8 |
240.0 |
| C6 |
C5 |
C4 |
H4 |
307.8 |
302.3 |
| O5 |
C1 |
O1 |
H1 |
119.6 |
120.0 |
| O1 |
C1 |
C2 |
N2 |
58.3 |
57.5 |
| O1 |
C1 |
C2 |
H2 |
177.8 |
177.7 |
| N2 |
C2 |
C1 |
H2 |
240.5 |
239.9 |
| C1 |
C2 |
N2 |
HN2 |
244.0 |
267.0 |
| C1 |
C2 |
C3 |
H3 |
54.9 |
63.1 |
| O5 |
C5 |
C4 |
H5 |
238.7 |
240.0 |
| C6 |
C5 |
C4 |
H5 |
118.3 |
120.0 |
| C5 |
C4 |
C3 |
H3 |
300.2 |
296.9 |
| O4 |
C4 |
C5 |
H4 |
119.7 |
120.2 |
| C5 |
C4 |
O4 |
HO4 |
180.0 |
300.0 |
| C8 |
C7 |
N2 |
HN2 |
359.5 |
0.0 |
| H81 |
C8 |
C7 |
H82 |
240.0 |
240.0 |
| H81 |
C8 |
C7 |
H83 |
120.0 |
120.0 |
| H82 |
C8 |
C7 |
H83 |
240.0 |
240.0 |
| C7 |
N2 |
C2 |
H2 |
304.6 |
326.8 |
| C2 |
N2 |
C7 |
HN2 |
180.0 |
180.0 |
| C1 |
C2 |
N2 |
H2 |
119.4 |
120.2 |
| C7 |
N2 |
C2 |
HN2 |
180.0 |
180.0 |
| N2 |
C2 |
C3 |
H3 |
291.8 |
303.1 |
| C4 |
C3 |
C2 |
H3 |
241.6 |
240.0 |
| C2 |
C3 |
C4 |
H3 |
118.6 |
120.0 |
| O4 |
C4 |
C5 |
H5 |
309.2 |
302.5 |
| C5 |
C4 |
O4 |
H4 |
241.1 |
239.8 |
| O4 |
C4 |
C3 |
H3 |
61.2 |
56.9 |
| C3 |
O3 |
C02 |
H4A |
329.1 |
31.5 |
| C03 |
C02 |
O3 |
H4A |
120.2 |
120.0 |
| O3 |
C02 |
C01 |
H1A |
180.0 |
295.3 |
| O3 |
C02 |
C01 |
H2A |
300.0 |
55.4 |
| O3 |
C02 |
C01 |
H3A |
60.0 |
175.4 |
| O3 |
C02 |
C03 |
H4A |
239.4 |
240.0 |
| C03 |
C02 |
C01 |
H1A |
300.4 |
55.3 |
| C03 |
C02 |
C01 |
H2A |
60.4 |
175.4 |
| C03 |
C02 |
C01 |
H3A |
180.4 |
295.3 |
| O04 |
C03 |
C02 |
O05 |
179.8 |
179.9 |
| C02 |
C03 |
O04 |
H5A |
180.2 |
180.0 |
| H1A |
C01 |
C02 |
H2A |
240.0 |
239.9 |
| H1A |
C01 |
C02 |
H3A |
120.0 |
120.0 |
| H2A |
C01 |
C02 |
H3A |
240.0 |
240.0 |
| C02 |
C03 |
O05 |
O04 |
179.8 |
179.9 |
| O05 |
C03 |
C02 |
H4A |
182.1 |
125.0 |
| O05 |
C03 |
O04 |
H5A |
0.0 |
359.9 |
| C02 |
C03 |
O04 |
O05 |
180.2 |
180.1 |
| O04 |
C03 |
C02 |
H4A |
1.9 |
304.9 |
| C02 |
C01 |
H1A |
H2A |
120.0 |
120.1 |
| C02 |
C01 |
H1A |
H3A |
240.0 |
240.0 |
| H2A |
C01 |
H1A |
H3A |
120.0 |
120.0 |
| C02 |
C01 |
H2A |
H1A |
240.0 |
239.9 |
| C02 |
C01 |
H2A |
H3A |
120.0 |
120.0 |
| H1A |
C01 |
H2A |
H3A |
240.0 |
240.0 |
| C02 |
C01 |
H3A |
H1A |
120.0 |
120.0 |
| C02 |
C01 |
H3A |
H2A |
240.0 |
240.0 |
| H1A |
C01 |
H3A |
H2A |
120.0 |
120.0 |
| H4A |
C02 |
C03 |
O05 |
182.1 |
125.0 |
| H4A |
C02 |
C03 |
O04 |
1.9 |
304.9 |
| H4A |
C02 |
C01 |
H1A |
59.6 |
175.3 |
| H4A |
C02 |
C01 |
H2A |
179.6 |
295.4 |
| H4A |
C02 |
C01 |
H3A |
299.6 |
55.4 |
| H5A |
O04 |
C03 |
O05 |
0.0 |
359.9 |
| C1 |
C2 |
H2 |
N2 |
238.4 |
239.8 |
| H2 |
C2 |
N2 |
HN2 |
124.7 |
146.8 |
| H2 |
C2 |
C3 |
H3 |
173.6 |
183.0 |
| O5 |
C1 |
H1 |
O1 |
239.4 |
240.0 |
| H1 |
C1 |
C2 |
N2 |
297.9 |
297.5 |
| H1 |
C1 |
C2 |
H2 |
57.4 |
57.7 |
| O5 |
C5 |
H5 |
C4 |
124.0 |
120.0 |
| H5 |
C5 |
C4 |
O4 |
309.2 |
302.5 |
| H5 |
C5 |
C4 |
H4 |
189.5 |
182.3 |
| C5 |
C4 |
H4 |
O4 |
119.5 |
120.2 |
| H4 |
C4 |
C5 |
H5 |
189.5 |
182.3 |
| H4 |
C4 |
C3 |
H3 |
181.4 |
177.1 |
| H4 |
C4 |
O4 |
HO4 |
298.9 |
60.2 |
| HO4 |
O4 |
C4 |
H4 |
298.9 |
60.2 |
| O6 |
C6 |
H61 |
H62 |
121.0 |
240.0 |
| H61 |
C6 |
C5 |
H5 |
183.2 |
65.1 |
| O6 |
C6 |
H62 |
H61 |
239.0 |
120.0 |
| H62 |
C6 |
C5 |
H5 |
62.6 |
185.0 |
| HO6 |
O6 |
C6 |
H61 |
299.6 |
59.9 |
| HO6 |
O6 |
C6 |
H62 |
60.3 |
300.0 |
| HN2 |
N2 |
C2 |
H2 |
124.7 |
146.8 |
| C7 |
C8 |
H81 |
H82 |
120.0 |
120.0 |
| C7 |
C8 |
H81 |
H83 |
240.0 |
240.0 |
| H82 |
C8 |
H81 |
H83 |
120.0 |
120.1 |
| C7 |
C8 |
H82 |
H81 |
240.0 |
240.0 |
| C7 |
C8 |
H82 |
H83 |
120.0 |
120.0 |
| H81 |
C8 |
H82 |
H83 |
240.0 |
239.9 |
| C7 |
C8 |
H83 |
H81 |
120.0 |
119.9 |
| C7 |
C8 |
H83 |
H82 |
240.0 |
240.0 |
| H81 |
C8 |
H83 |
H82 |
120.0 |
120.1 |