Atom Nomenclature for 491

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 491

Atom Name (V3) Atom Name (V2)
C01 C01
C02 C02
C03 C03
O04 O04
O05 O05
O3 O06
C3 C07
C2 C08
C1 C09
O5 O10
C5 C11
C4 C12
O4 O13
C6 C14
O6 O15
O1 O16
P17 P17
O18 O18
O19 O19
O20 O20
N2 N21
C7 C22
O7 O23
C8 C24
H1A H1
H2A H2
H3A H3
H4A H4
H5A H5
H3 H6
H2 H7
H1 H8
H5 H9
H4 H10
HO4 H11
H61 H12
H62 H13
HO6 H14
H15 H15
H16 H16
HN2 H17
H81 H18
H82 H19
H83 H20