PDB Chemical Component 48S
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 48S
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O10 |
N9 |
1.389 |
1.417 |
| C11 |
N9 |
1.460 |
1.465 |
| N9 |
C8 |
1.336 |
1.348 |
| C8 |
O12 |
1.215 |
1.212 |
| C8 |
C3 |
1.505 |
1.507 |
| O7 |
P4 |
1.516 |
1.481 |
| C1 |
P4 |
1.794 |
1.823 |
| C1 |
C2 |
1.526 |
1.530 |
| C3 |
C2 |
1.523 |
1.530 |
| P4 |
O5 |
1.506 |
1.610 |
| P4 |
O6 |
1.507 |
1.609 |
| C2 |
C13 |
1.479 |
1.507 |
| C15 |
C13 |
1.384 |
1.382 |
| C15 |
C16 |
1.393 |
1.383 |
| C13 |
C14 |
1.395 |
1.383 |
| C16 |
C18 |
1.392 |
1.383 |
| C14 |
C17 |
1.395 |
1.383 |
| C18 |
C17 |
1.390 |
1.383 |
| C18 |
C19 |
1.506 |
1.506 |
| C11 |
H1 |
1.100 |
1.089 |
| C11 |
H2 |
1.100 |
1.090 |
| C11 |
H3 |
1.100 |
1.090 |
| C14 |
H4 |
1.080 |
1.079 |
| C15 |
H5 |
1.080 |
1.080 |
| C16 |
H6 |
1.080 |
1.080 |
| O5 |
H7 |
0.950 |
0.967 |
| O6 |
H8 |
0.950 |
0.968 |
| C1 |
H9 |
1.100 |
1.089 |
| C1 |
H10 |
1.100 |
1.090 |
| C2 |
H11 |
1.100 |
1.090 |
| C3 |
H12 |
1.100 |
1.091 |
| C3 |
H13 |
1.100 |
1.090 |
| O10 |
H14 |
0.950 |
0.968 |
| C19 |
H15 |
1.100 |
1.091 |
| C19 |
H16 |
1.100 |
1.090 |
| C19 |
H17 |
1.100 |
1.090 |
| C17 |
H18 |
1.080 |
1.080 |
Bond Angles for 48S
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C11 |
N9 |
C8 |
120.9 |
120.0 |
| N9 |
C11 |
H1 |
109.5 |
109.5 |
| N9 |
C11 |
H2 |
109.5 |
109.5 |
| N9 |
C11 |
H3 |
109.5 |
109.5 |
| N9 |
C8 |
O12 |
121.3 |
120.0 |
| C8 |
C3 |
H12 |
108.3 |
109.5 |
| C8 |
C3 |
H13 |
108.3 |
109.5 |
| O7 |
P4 |
O6 |
108.7 |
109.5 |
| C2 |
C1 |
H9 |
109.0 |
109.5 |
| C2 |
C1 |
H10 |
109.0 |
109.4 |
| C1 |
C2 |
H11 |
110.6 |
109.5 |
| C3 |
C2 |
H11 |
110.6 |
109.5 |
| P4 |
O5 |
H7 |
109.5 |
114.0 |
| P4 |
O6 |
H8 |
109.5 |
114.0 |
| C15 |
C16 |
C18 |
120.5 |
120.0 |
| C16 |
C15 |
H5 |
119.9 |
120.0 |
| C15 |
C16 |
H6 |
119.8 |
120.0 |
| C13 |
C14 |
C17 |
120.6 |
120.0 |
| C13 |
C14 |
H4 |
119.7 |
120.0 |
| C16 |
C18 |
C17 |
119.5 |
120.0 |
| C16 |
C18 |
C19 |
120.1 |
120.0 |
| C18 |
C16 |
H6 |
119.8 |
120.0 |
| C14 |
C17 |
C18 |
119.8 |
120.0 |
| C17 |
C14 |
H4 |
119.7 |
120.0 |
| C14 |
C17 |
H18 |
120.1 |
120.0 |
| C19 |
C18 |
C17 |
120.4 |
120.0 |
| C18 |
C17 |
H18 |
120.1 |
120.0 |
| C18 |
C19 |
H15 |
109.5 |
109.5 |
| C18 |
C19 |
H16 |
109.5 |
109.5 |
| C18 |
C19 |
H17 |
109.5 |
109.5 |
| H1 |
C11 |
H2 |
109.5 |
109.5 |
| H1 |
C11 |
H3 |
109.5 |
109.5 |
| H2 |
C11 |
H3 |
109.4 |
109.4 |
| H9 |
C1 |
H10 |
109.5 |
109.5 |
| H12 |
C3 |
H13 |
109.4 |
109.4 |
| H15 |
C19 |
H16 |
109.5 |
109.5 |
| H15 |
C19 |
H17 |
109.4 |
109.4 |
| H16 |
C19 |
H17 |
109.5 |
109.5 |
Torsion Angles for 48S
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O10 |
N9 |
C11 |
H1 |
180.0 |
240.0 |
| O10 |
N9 |
C11 |
H2 |
300.0 |
0.0 |
| O10 |
N9 |
C11 |
H3 |
60.0 |
120.0 |
| O10 |
N9 |
C8 |
O12 |
359.5 |
180.0 |
| C11 |
N9 |
C8 |
O12 |
179.8 |
0.0 |
| H1 |
C11 |
N9 |
H2 |
240.0 |
239.9 |
| H1 |
C11 |
N9 |
H3 |
120.0 |
120.0 |
| H2 |
C11 |
N9 |
H3 |
240.0 |
240.1 |
| C8 |
N9 |
C11 |
H1 |
359.7 |
60.0 |
| C8 |
N9 |
C11 |
H2 |
119.7 |
180.0 |
| C8 |
N9 |
C11 |
H3 |
239.7 |
299.9 |
| N9 |
C8 |
C3 |
H12 |
332.0 |
60.0 |
| N9 |
C8 |
C3 |
H13 |
90.6 |
300.0 |
| O12 |
C8 |
C3 |
H12 |
153.1 |
240.0 |
| O12 |
C8 |
C3 |
H13 |
271.7 |
120.0 |
| C11 |
N9 |
C8 |
C3 |
0.9 |
180.0 |
| C8 |
C3 |
C2 |
H11 |
307.1 |
305.0 |
| H12 |
C3 |
C8 |
H13 |
241.4 |
120.0 |
| O7 |
P4 |
O5 |
H7 |
0.0 |
300.0 |
| O7 |
P4 |
O6 |
H8 |
360.0 |
180.0 |
| C1 |
P4 |
O5 |
H7 |
240.4 |
180.1 |
| C1 |
P4 |
O6 |
H8 |
119.9 |
300.0 |
| C3 |
C2 |
C1 |
H11 |
239.5 |
240.0 |
| H9 |
C1 |
C2 |
H10 |
119.5 |
120.0 |
| C3 |
C2 |
C1 |
H9 |
73.8 |
75.0 |
| C3 |
C2 |
C1 |
H10 |
314.3 |
315.0 |
| C1 |
C2 |
C3 |
H11 |
120.5 |
120.1 |
| O6 |
P4 |
O5 |
H7 |
119.3 |
60.0 |
| C2 |
C13 |
C14 |
C17 |
182.3 |
179.7 |
| C2 |
C13 |
C14 |
H4 |
2.3 |
359.7 |
| C15 |
C13 |
C14 |
C17 |
358.1 |
0.0 |
| C15 |
C13 |
C14 |
H4 |
178.1 |
180.0 |
| C15 |
C16 |
C18 |
C17 |
359.9 |
0.0 |
| C15 |
C16 |
C18 |
C19 |
180.0 |
180.0 |
| C18 |
C16 |
C15 |
H6 |
180.0 |
180.0 |
| C13 |
C14 |
C17 |
C18 |
0.9 |
0.0 |
| C17 |
C14 |
C13 |
H4 |
180.0 |
180.0 |
| C13 |
C14 |
C17 |
H18 |
180.9 |
180.0 |
| C18 |
C16 |
C15 |
H5 |
179.1 |
180.0 |
| C15 |
C16 |
C18 |
H6 |
180.0 |
180.0 |
| C14 |
C17 |
C18 |
C16 |
0.1 |
360.0 |
| C19 |
C18 |
C16 |
C17 |
180.1 |
179.9 |
| C16 |
C18 |
C17 |
H18 |
180.1 |
180.0 |
| C16 |
C18 |
C19 |
H15 |
89.9 |
90.0 |
| C16 |
C18 |
C19 |
H16 |
209.9 |
210.0 |
| C16 |
C18 |
C19 |
H17 |
330.0 |
330.0 |
| C13 |
C14 |
C17 |
H4 |
180.0 |
180.0 |
| C16 |
C18 |
C17 |
C14 |
0.1 |
360.0 |
| C19 |
C18 |
C17 |
C14 |
180.0 |
180.0 |
| C18 |
C17 |
C14 |
H18 |
180.0 |
180.0 |
| C16 |
C18 |
C17 |
C19 |
180.1 |
179.9 |
| C17 |
C18 |
C16 |
H6 |
179.9 |
180.1 |
| C18 |
C17 |
C14 |
H4 |
180.9 |
180.0 |
| C14 |
C17 |
C18 |
H18 |
180.0 |
180.0 |
| C17 |
C18 |
C19 |
H15 |
270.0 |
269.9 |
| C17 |
C18 |
C19 |
H16 |
30.1 |
30.0 |
| C17 |
C18 |
C19 |
H17 |
150.1 |
150.0 |
| C16 |
C18 |
C19 |
C17 |
179.9 |
180.1 |
| C19 |
C18 |
C16 |
H6 |
0.0 |
360.0 |
| C14 |
C17 |
C18 |
C19 |
180.0 |
180.0 |
| C19 |
C18 |
C17 |
H18 |
360.0 |
0.0 |
| H15 |
C19 |
C18 |
H16 |
240.0 |
240.0 |
| H15 |
C19 |
C18 |
H17 |
120.0 |
120.0 |
| H16 |
C19 |
C18 |
H17 |
240.0 |
240.0 |
| H1 |
C11 |
N9 |
C8 |
359.7 |
60.0 |
| N9 |
C11 |
H1 |
H2 |
120.0 |
120.1 |
| N9 |
C11 |
H1 |
H3 |
240.0 |
240.0 |
| H2 |
C11 |
H1 |
H3 |
120.0 |
119.9 |
| H2 |
C11 |
N9 |
C8 |
119.7 |
180.0 |
| N9 |
C11 |
H2 |
H1 |
240.0 |
239.9 |
| N9 |
C11 |
H2 |
H3 |
120.0 |
120.0 |
| H1 |
C11 |
H2 |
H3 |
240.0 |
240.1 |
| H3 |
C11 |
N9 |
C8 |
239.7 |
299.9 |
| N9 |
C11 |
H3 |
H1 |
120.0 |
120.1 |
| N9 |
C11 |
H3 |
H2 |
240.0 |
240.0 |
| H1 |
C11 |
H3 |
H2 |
120.0 |
119.9 |
| C13 |
C14 |
H4 |
C17 |
180.0 |
180.0 |
| H4 |
C14 |
C17 |
C18 |
180.9 |
180.0 |
| H4 |
C14 |
C17 |
H18 |
0.9 |
0.0 |
| H5 |
C15 |
C16 |
C18 |
179.1 |
180.0 |
| H5 |
C15 |
C16 |
H6 |
359.1 |
359.9 |
| C15 |
C16 |
H6 |
C18 |
180.0 |
180.0 |
| H6 |
C16 |
C15 |
H5 |
359.1 |
359.9 |
| H6 |
C16 |
C18 |
C17 |
179.9 |
180.1 |
| H6 |
C16 |
C18 |
C19 |
0.0 |
360.0 |
| C2 |
C1 |
H9 |
H10 |
240.8 |
240.0 |
| H9 |
C1 |
C2 |
H11 |
194.3 |
195.0 |
| C2 |
C1 |
H10 |
H9 |
119.2 |
120.0 |
| H10 |
C1 |
C2 |
H11 |
74.9 |
75.0 |
| H11 |
C2 |
C1 |
H9 |
194.3 |
195.0 |
| H11 |
C2 |
C1 |
H10 |
74.9 |
75.0 |
| C8 |
C3 |
H12 |
H13 |
117.9 |
239.9 |
| H12 |
C3 |
C2 |
H11 |
186.4 |
64.9 |
| C8 |
C3 |
H13 |
H12 |
242.1 |
120.0 |
| H13 |
C3 |
C2 |
H11 |
67.8 |
184.9 |
| H15 |
C19 |
C18 |
C17 |
270.0 |
269.9 |
| C18 |
C19 |
H15 |
H16 |
120.0 |
120.1 |
| C18 |
C19 |
H15 |
H17 |
240.0 |
240.0 |
| H16 |
C19 |
H15 |
H17 |
120.0 |
119.9 |
| H16 |
C19 |
C18 |
C17 |
30.1 |
30.0 |
| C18 |
C19 |
H16 |
H15 |
240.0 |
240.0 |
| C18 |
C19 |
H16 |
H17 |
120.0 |
120.0 |
| H15 |
C19 |
H16 |
H17 |
240.1 |
240.1 |
| H17 |
C19 |
C18 |
C17 |
150.1 |
150.0 |
| C18 |
C19 |
H17 |
H15 |
120.0 |
120.0 |
| C18 |
C19 |
H17 |
H16 |
240.0 |
239.9 |
| H15 |
C19 |
H17 |
H16 |
120.0 |
119.9 |
| C14 |
C17 |
H18 |
C18 |
180.0 |
180.0 |
| H18 |
C17 |
C14 |
H4 |
0.9 |
0.0 |