PDB Chemical Component 472
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 472
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C1 |
1.447 |
1.465 |
| C1 |
H1 |
1.100 |
1.090 |
| C1 |
H1A |
1.100 |
1.090 |
| C1 |
H1B |
1.100 |
1.090 |
| C4 |
N1 |
1.348 |
1.373 |
| N1 |
C2 |
1.358 |
1.350 |
| C2 |
O1 |
1.222 |
1.213 |
| C3 |
C2 |
1.552 |
1.516 |
| N2 |
C4 |
1.294 |
1.298 |
| N2 |
C3 |
1.507 |
1.471 |
| C10 |
C3 |
1.544 |
1.507 |
| C3 |
C5 |
1.539 |
1.507 |
| N3 |
C4 |
1.353 |
1.375 |
| N3 |
HN3 |
1.000 |
0.970 |
| N3 |
HN3A |
1.000 |
0.971 |
| C7 |
N4 |
1.351 |
1.319 |
| N4 |
C8 |
1.348 |
1.319 |
| C6 |
C5 |
1.406 |
1.387 |
| C5 |
C9 |
1.401 |
1.386 |
| N5 |
C20 |
1.359 |
1.318 |
| N5 |
C19 |
1.354 |
1.319 |
| C6 |
C7 |
1.386 |
1.382 |
| C6 |
H6 |
1.080 |
1.080 |
| C7 |
H7 |
1.080 |
1.080 |
| C9 |
C8 |
1.392 |
1.382 |
| C8 |
H8 |
1.080 |
1.080 |
| C9 |
H9 |
1.080 |
1.081 |
| C15 |
C10 |
1.406 |
1.380 |
| C10 |
C11 |
1.407 |
1.383 |
| C12 |
C11 |
1.397 |
1.383 |
| C11 |
H11 |
1.080 |
1.079 |
| C13 |
C12 |
1.398 |
1.381 |
| C12 |
H12 |
1.080 |
1.080 |
| C14 |
C13 |
1.402 |
1.393 |
| C13 |
H13 |
1.080 |
1.080 |
| C16 |
C14 |
1.470 |
1.484 |
| C14 |
C15 |
1.405 |
1.394 |
| C15 |
H15 |
1.080 |
1.080 |
| C20 |
C16 |
1.394 |
1.393 |
| C16 |
C17 |
1.403 |
1.397 |
| C18 |
C17 |
1.394 |
1.385 |
| C17 |
H17 |
1.080 |
1.080 |
| C19 |
C18 |
1.386 |
1.383 |
| C18 |
H18 |
1.080 |
1.080 |
| C19 |
H19 |
1.080 |
1.079 |
| C20 |
H20 |
1.080 |
1.080 |
Bond Angles for 472
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N1 |
C1 |
H1 |
109.5 |
109.4 |
| N1 |
C1 |
H1A |
109.5 |
109.5 |
| N1 |
C1 |
H1B |
109.5 |
109.5 |
| H1 |
C1 |
H1A |
109.5 |
109.4 |
| H1 |
C1 |
H1B |
109.4 |
109.5 |
| H1A |
C1 |
H1B |
109.5 |
109.5 |
| N1 |
C2 |
O1 |
125.1 |
127.4 |
| C3 |
N2 |
C4 |
106.9 |
107.5 |
| N2 |
C4 |
N3 |
121.1 |
123.6 |
| N2 |
C3 |
C5 |
108.1 |
110.6 |
| C3 |
C5 |
C9 |
123.1 |
120.8 |
| C4 |
N3 |
HN3 |
120.0 |
120.0 |
| C4 |
N3 |
HN3A |
120.0 |
120.0 |
| HN3 |
N3 |
HN3A |
120.0 |
120.0 |
| C7 |
N4 |
C8 |
116.6 |
121.7 |
| N4 |
C8 |
H8 |
117.9 |
119.7 |
| C6 |
C5 |
C9 |
117.4 |
118.4 |
| C5 |
C9 |
C8 |
118.9 |
119.2 |
| C5 |
C9 |
H9 |
120.6 |
120.4 |
| C19 |
N5 |
C20 |
117.0 |
121.9 |
| N5 |
C20 |
C16 |
124.6 |
120.6 |
| N5 |
C20 |
H20 |
117.7 |
119.7 |
| N5 |
C19 |
C18 |
123.2 |
121.0 |
| N5 |
C19 |
H19 |
118.4 |
119.5 |
| C7 |
C6 |
H6 |
120.3 |
120.5 |
| C6 |
C7 |
H7 |
118.2 |
119.6 |
| C9 |
C8 |
H8 |
118.0 |
119.6 |
| C10 |
C11 |
H11 |
119.7 |
119.9 |
| C12 |
C11 |
H11 |
119.8 |
119.8 |
| C13 |
C12 |
H12 |
119.7 |
119.9 |
| C14 |
C13 |
H13 |
119.8 |
120.1 |
| C14 |
C15 |
H15 |
118.6 |
120.1 |
| C16 |
C17 |
H17 |
119.7 |
120.8 |
| C18 |
C17 |
H17 |
119.7 |
120.8 |
| C19 |
C18 |
H18 |
120.9 |
120.3 |
Torsion Angles for 472
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H1 |
C1 |
N1 |
H1A |
240.0 |
240.1 |
| H1 |
C1 |
N1 |
H1B |
120.0 |
120.0 |
| H1A |
C1 |
N1 |
H1B |
240.0 |
239.9 |
| N1 |
C1 |
H1 |
H1A |
120.0 |
119.9 |
| N1 |
C1 |
H1 |
H1B |
240.0 |
240.0 |
| H1A |
C1 |
H1 |
H1B |
120.0 |
120.0 |
| N1 |
C1 |
H1A |
H1 |
240.0 |
240.1 |
| N1 |
C1 |
H1A |
H1B |
120.0 |
120.1 |
| H1 |
C1 |
H1A |
H1B |
240.0 |
240.0 |
| N1 |
C1 |
H1B |
H1 |
120.0 |
120.0 |
| N1 |
C1 |
H1B |
H1A |
240.0 |
240.0 |
| H1 |
C1 |
H1B |
H1A |
120.0 |
120.0 |
| C4 |
N1 |
C1 |
H1 |
180.0 |
269.6 |
| C4 |
N1 |
C1 |
H1A |
300.0 |
29.6 |
| C4 |
N1 |
C1 |
H1B |
60.0 |
149.6 |
| C2 |
N1 |
C1 |
H1 |
0.0 |
90.1 |
| C2 |
N1 |
C1 |
H1A |
120.0 |
210.0 |
| C2 |
N1 |
C1 |
H1B |
240.1 |
330.1 |
| C4 |
N2 |
C3 |
C5 |
237.7 |
241.4 |
| N2 |
C4 |
N3 |
HN3 |
0.0 |
360.0 |
| N2 |
C4 |
N3 |
HN3A |
180.0 |
180.0 |
| C3 |
N2 |
C4 |
N3 |
173.9 |
180.0 |
| N2 |
C3 |
C5 |
C9 |
142.5 |
164.9 |
| C5 |
C3 |
N2 |
C4 |
237.7 |
241.4 |
| C6 |
C5 |
C3 |
C9 |
180.0 |
180.1 |
| C3 |
C5 |
C9 |
C8 |
180.0 |
180.1 |
| C3 |
C5 |
C9 |
H9 |
0.1 |
0.0 |
| HN3 |
N3 |
C4 |
HN3A |
180.0 |
179.9 |
| C4 |
N3 |
HN3 |
HN3A |
180.0 |
180.1 |
| C4 |
N3 |
HN3A |
HN3 |
180.0 |
179.9 |
| C7 |
N4 |
C8 |
H8 |
180.2 |
180.0 |
| C5 |
C9 |
C8 |
N4 |
359.9 |
360.0 |
| C9 |
C8 |
N4 |
H8 |
180.0 |
180.1 |
| C3 |
C5 |
C6 |
C9 |
180.0 |
179.9 |
| C6 |
C5 |
C9 |
C8 |
0.0 |
360.0 |
| C6 |
C5 |
C9 |
H9 |
180.0 |
179.9 |
| C5 |
C9 |
C8 |
H8 |
179.9 |
180.0 |
| C20 |
N5 |
C19 |
C18 |
359.9 |
0.1 |
| C20 |
N5 |
C19 |
H19 |
179.9 |
179.9 |
| C19 |
N5 |
C20 |
C16 |
0.2 |
360.0 |
| C19 |
N5 |
C20 |
H20 |
180.2 |
180.0 |
| N5 |
C19 |
C18 |
H18 |
180.0 |
180.0 |
| C6 |
C7 |
N4 |
C8 |
359.8 |
0.0 |
| C7 |
C6 |
C5 |
C9 |
360.0 |
0.1 |
| H6 |
C6 |
C5 |
C9 |
180.0 |
180.0 |
| H6 |
C6 |
C7 |
H7 |
0.1 |
0.0 |
| H7 |
C7 |
N4 |
C8 |
179.8 |
180.0 |
| H7 |
C7 |
C6 |
H6 |
0.1 |
0.0 |
| N4 |
C8 |
C9 |
H8 |
180.0 |
179.9 |
| C5 |
C9 |
C8 |
H9 |
180.0 |
180.0 |
| C5 |
C9 |
H9 |
C8 |
180.0 |
180.0 |
| H9 |
C9 |
C8 |
H8 |
359.9 |
0.1 |
| C15 |
C10 |
C11 |
H11 |
180.1 |
180.2 |
| C12 |
C11 |
C10 |
H11 |
180.0 |
180.0 |
| C10 |
C11 |
C12 |
H11 |
180.0 |
180.0 |
| C13 |
C12 |
C11 |
H11 |
180.0 |
180.0 |
| H12 |
C12 |
C11 |
H11 |
359.9 |
0.0 |
| C14 |
C13 |
C12 |
H12 |
180.1 |
180.0 |
| H13 |
C13 |
C12 |
H12 |
0.1 |
359.9 |
| N5 |
C20 |
C16 |
C14 |
180.0 |
180.0 |
| C16 |
C14 |
C13 |
H13 |
0.5 |
0.1 |
| C16 |
C14 |
C15 |
H15 |
359.5 |
359.7 |
| C15 |
C14 |
C13 |
H13 |
179.9 |
179.8 |
| N5 |
C20 |
C16 |
H20 |
180.0 |
180.0 |
| C20 |
C16 |
C17 |
H17 |
180.2 |
180.0 |
| N5 |
C20 |
C16 |
C17 |
359.8 |
360.0 |
| C18 |
C17 |
C16 |
H17 |
180.0 |
180.0 |
| N5 |
C19 |
C18 |
C17 |
0.1 |
359.9 |
| C16 |
C17 |
C18 |
H17 |
180.0 |
180.0 |
| C18 |
C19 |
N5 |
C20 |
359.9 |
0.1 |
| N5 |
C19 |
C18 |
H19 |
180.0 |
179.9 |
| C19 |
C18 |
C17 |
H17 |
179.9 |
180.1 |
| H18 |
C18 |
C17 |
H17 |
359.9 |
360.0 |
| H19 |
C19 |
N5 |
C20 |
179.9 |
179.9 |
| N5 |
C19 |
H19 |
C18 |
180.0 |
180.1 |
| H19 |
C19 |
C18 |
H18 |
0.0 |
0.1 |
| N5 |
C20 |
H20 |
C16 |
180.0 |
180.0 |