PDB Chemical Component 462
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 462
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.496 |
1.529 |
| C2 |
C3 |
1.500 |
1.530 |
| C3 |
O1 |
1.411 |
1.429 |
| N3 |
C16 |
1.354 |
1.374 |
| O1 |
C4 |
1.363 |
1.359 |
| N1 |
C16 |
1.280 |
1.382 |
| N1 |
C15 |
1.368 |
1.347 |
| CL1 |
C22 |
1.736 |
1.736 |
| C16 |
N2 |
1.346 |
1.302 |
| C4 |
C5 |
1.416 |
1.387 |
| C4 |
C9 |
1.414 |
1.388 |
| C5 |
C6 |
1.412 |
1.380 |
| C14 |
C15 |
1.515 |
1.508 |
| C14 |
C13 |
1.520 |
1.506 |
| C9 |
C8 |
1.391 |
1.380 |
| C15 |
O2 |
1.209 |
1.213 |
| C6 |
C7 |
1.401 |
1.394 |
| C21 |
C22 |
1.414 |
1.380 |
| C21 |
C20 |
1.412 |
1.383 |
| C8 |
C7 |
1.437 |
1.394 |
| C22 |
C17 |
1.433 |
1.397 |
| C7 |
C10 |
1.471 |
1.484 |
| C13 |
C10 |
1.435 |
1.390 |
| C13 |
C12 |
1.421 |
1.345 |
| C20 |
C19 |
1.412 |
1.384 |
| C10 |
C11 |
1.431 |
1.347 |
| C17 |
C12 |
1.437 |
1.479 |
| C17 |
C18 |
1.450 |
1.395 |
| C12 |
S1 |
1.683 |
1.758 |
| C19 |
C18 |
1.406 |
1.380 |
| C11 |
S1 |
1.700 |
1.758 |
| C1 |
H11A |
1.099 |
1.090 |
| C1 |
H12 |
1.100 |
1.089 |
| C1 |
H13 |
1.100 |
1.090 |
| C2 |
H21A |
1.100 |
1.090 |
| C2 |
H22 |
1.100 |
1.090 |
| C3 |
H31 |
1.100 |
1.090 |
| C3 |
H32 |
1.100 |
1.090 |
| C5 |
H5 |
1.080 |
1.080 |
| C6 |
H6 |
1.080 |
1.079 |
| C8 |
H8 |
1.080 |
1.081 |
| C9 |
H9 |
1.080 |
1.080 |
| C11 |
H11 |
1.080 |
1.080 |
| C14 |
H141 |
1.100 |
1.090 |
| C14 |
H142 |
1.100 |
1.090 |
| N1 |
HN1 |
1.000 |
0.970 |
| N2 |
HN2 |
1.000 |
0.970 |
| N3 |
HN31 |
1.000 |
0.970 |
| N3 |
HN32 |
1.000 |
0.970 |
| C18 |
H18 |
1.080 |
1.080 |
| C19 |
H19 |
1.080 |
1.080 |
| C20 |
H20 |
1.080 |
1.080 |
| C21 |
H21 |
1.080 |
1.080 |
Bond Angles for 462
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1 |
C2 |
C3 |
113.9 |
109.5 |
| C2 |
C1 |
H11A |
109.5 |
109.5 |
| C2 |
C1 |
H12 |
109.5 |
109.5 |
| C2 |
C1 |
H13 |
109.5 |
109.5 |
| C1 |
C2 |
H21A |
108.0 |
109.5 |
| C1 |
C2 |
H22 |
107.0 |
109.5 |
| C2 |
C3 |
O1 |
106.8 |
109.5 |
| C3 |
C2 |
H21A |
108.0 |
109.4 |
| C3 |
C2 |
H22 |
107.0 |
109.4 |
| C2 |
C3 |
H31 |
110.3 |
109.5 |
| C2 |
C3 |
H32 |
110.9 |
109.4 |
| C3 |
O1 |
C4 |
122.7 |
117.0 |
| O1 |
C3 |
H31 |
110.4 |
109.5 |
| O1 |
C3 |
H32 |
111.0 |
109.5 |
| O1 |
C4 |
C5 |
124.8 |
120.0 |
| O1 |
C4 |
C9 |
117.2 |
119.9 |
| N1 |
C16 |
N2 |
128.2 |
120.0 |
| C16 |
N1 |
HN1 |
117.7 |
120.0 |
| C16 |
N2 |
HN2 |
111.1 |
120.0 |
| C5 |
C4 |
C9 |
118.0 |
120.2 |
| C4 |
C5 |
C6 |
121.3 |
120.1 |
| C4 |
C5 |
H5 |
119.4 |
120.0 |
| C4 |
C9 |
C8 |
120.3 |
120.0 |
| C4 |
C9 |
H9 |
119.9 |
120.1 |
| C5 |
C6 |
C7 |
121.2 |
119.9 |
| C6 |
C5 |
H5 |
119.3 |
119.9 |
| C5 |
C6 |
H6 |
119.4 |
120.1 |
| C14 |
C15 |
O2 |
119.2 |
120.0 |
| C15 |
C14 |
H141 |
109.7 |
109.4 |
| C15 |
C14 |
H142 |
109.9 |
109.4 |
| C9 |
C8 |
H8 |
118.8 |
120.1 |
| C6 |
C7 |
C10 |
120.5 |
120.1 |
| C7 |
C6 |
H6 |
119.4 |
120.0 |
| C22 |
C21 |
H21 |
119.8 |
120.0 |
| C21 |
C20 |
H20 |
119.8 |
119.9 |
| C8 |
C7 |
C10 |
122.7 |
120.1 |
| C7 |
C10 |
C11 |
123.4 |
122.7 |
| C20 |
C19 |
H19 |
119.8 |
119.9 |
| C10 |
C11 |
S1 |
113.7 |
109.7 |
| C10 |
C11 |
H11 |
123.1 |
125.1 |
| C17 |
C18 |
H18 |
120.1 |
120.1 |
| C19 |
C18 |
H18 |
120.1 |
120.1 |
| S1 |
C11 |
H11 |
123.1 |
125.2 |
| H11A |
C1 |
H12 |
109.5 |
109.5 |
| H11A |
C1 |
H13 |
109.4 |
109.4 |
| H12 |
C1 |
H13 |
109.5 |
109.5 |
| H21A |
C2 |
H22 |
113.0 |
109.4 |
| H31 |
C3 |
H32 |
107.4 |
109.4 |
| H141 |
C14 |
H142 |
108.8 |
109.5 |
| HN31 |
N3 |
HN32 |
124.5 |
120.0 |
Torsion Angles for 462
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1 |
C2 |
C3 |
O1 |
186.4 |
180.0 |
| C3 |
C2 |
C1 |
H21A |
240.0 |
240.0 |
| C3 |
C2 |
C1 |
H22 |
118.1 |
120.0 |
| C1 |
C2 |
C3 |
H31 |
306.4 |
300.0 |
| C1 |
C2 |
C3 |
H32 |
65.3 |
60.0 |
| H11A |
C1 |
C2 |
H12 |
240.0 |
240.0 |
| H11A |
C1 |
C2 |
H13 |
120.0 |
119.9 |
| H12 |
C1 |
C2 |
H13 |
240.0 |
239.9 |
| H21A |
C2 |
C1 |
H22 |
238.1 |
240.0 |
| C3 |
C2 |
C1 |
H11A |
247.7 |
179.9 |
| C3 |
C2 |
C1 |
H12 |
7.7 |
300.0 |
| C3 |
C2 |
C1 |
H13 |
127.7 |
60.0 |
| C1 |
C2 |
C3 |
H21A |
120.0 |
120.0 |
| C1 |
C2 |
C3 |
H22 |
241.9 |
240.0 |
| C2 |
C3 |
O1 |
C4 |
201.1 |
180.0 |
| O1 |
C3 |
C2 |
H31 |
240.0 |
240.0 |
| O1 |
C3 |
C2 |
H32 |
121.1 |
120.0 |
| H21A |
C2 |
C3 |
H22 |
121.9 |
119.9 |
| H31 |
C3 |
C2 |
H32 |
241.1 |
240.0 |
| O1 |
C3 |
C2 |
H21A |
66.4 |
59.9 |
| O1 |
C3 |
C2 |
H22 |
304.5 |
300.0 |
| C2 |
C3 |
O1 |
H31 |
120.0 |
120.1 |
| C2 |
C3 |
O1 |
H32 |
239.0 |
240.0 |
| C3 |
O1 |
C4 |
C5 |
203.2 |
180.0 |
| C3 |
O1 |
C4 |
C9 |
21.3 |
359.7 |
| H31 |
C3 |
O1 |
H32 |
119.0 |
119.9 |
| N3 |
C16 |
N1 |
HN1 |
2.8 |
354.8 |
| N3 |
C16 |
N2 |
HN2 |
1.7 |
0.0 |
| C4 |
O1 |
C3 |
H31 |
81.1 |
59.9 |
| C4 |
O1 |
C3 |
H32 |
322.2 |
300.0 |
| C5 |
C4 |
O1 |
C9 |
181.9 |
180.3 |
| O1 |
C4 |
C5 |
C6 |
180.6 |
180.0 |
| O1 |
C4 |
C5 |
H5 |
0.6 |
359.9 |
| O1 |
C4 |
C9 |
C8 |
179.2 |
179.7 |
| O1 |
C4 |
C9 |
H9 |
359.2 |
0.0 |
| N1 |
C16 |
N2 |
HN2 |
176.7 |
180.0 |
| N1 |
C15 |
C14 |
H141 |
321.9 |
59.9 |
| N1 |
C15 |
C14 |
H142 |
81.6 |
300.0 |
| CL1 |
C22 |
C21 |
H21 |
359.7 |
359.4 |
| N2 |
C16 |
N1 |
HN1 |
188.2 |
174.9 |
| O1 |
C4 |
C5 |
C9 |
178.1 |
179.7 |
| C5 |
C4 |
C9 |
C8 |
357.5 |
359.4 |
| C5 |
C4 |
C9 |
H9 |
177.5 |
179.7 |
| C4 |
C5 |
C6 |
C7 |
357.4 |
359.9 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
180.1 |
| C4 |
C5 |
C6 |
H6 |
177.4 |
180.0 |
| O1 |
C4 |
C9 |
C5 |
181.8 |
180.3 |
| C9 |
C4 |
C5 |
C6 |
2.5 |
0.3 |
| C9 |
C4 |
C5 |
H5 |
182.5 |
180.2 |
| C4 |
C9 |
C8 |
H8 |
182.6 |
180.3 |
| C6 |
C5 |
C4 |
C9 |
2.5 |
0.3 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
179.9 |
| C5 |
C6 |
C7 |
C10 |
180.3 |
180.0 |
| C7 |
C6 |
C5 |
H6 |
180.0 |
179.9 |
| H141 |
C14 |
C15 |
H142 |
240.3 |
120.0 |
| C4 |
C9 |
C8 |
H9 |
180.0 |
180.3 |
| C9 |
C8 |
C7 |
C10 |
179.6 |
179.8 |
| O2 |
C15 |
C14 |
H141 |
147.0 |
239.9 |
| O2 |
C15 |
C14 |
H142 |
266.6 |
120.0 |
| C7 |
C6 |
C5 |
H5 |
177.4 |
180.0 |
| C5 |
C6 |
C7 |
H6 |
180.0 |
180.1 |
| C8 |
C7 |
C6 |
C10 |
182.2 |
180.1 |
| C6 |
C7 |
C10 |
C11 |
310.6 |
310.1 |
| C22 |
C21 |
C20 |
H20 |
182.3 |
179.7 |
| C21 |
C20 |
C19 |
H19 |
177.6 |
180.0 |
| C4 |
C9 |
C8 |
C7 |
2.7 |
0.6 |
| C6 |
C7 |
C8 |
C10 |
177.8 |
179.9 |
| C8 |
C7 |
C6 |
H6 |
182.5 |
180.0 |
| C8 |
C7 |
C10 |
C11 |
128.3 |
129.9 |
| C22 |
C17 |
C18 |
H18 |
177.0 |
180.3 |
| C10 |
C7 |
C6 |
H6 |
0.3 |
359.9 |
| C7 |
C10 |
C11 |
S1 |
178.2 |
180.0 |
| C7 |
C10 |
C11 |
H11 |
358.2 |
0.0 |
| C13 |
C10 |
C11 |
H11 |
181.7 |
180.3 |
| C20 |
C19 |
C18 |
H18 |
182.7 |
180.0 |
| S1 |
C11 |
C10 |
H11 |
180.0 |
180.0 |
| C19 |
C18 |
C17 |
H18 |
180.0 |
180.0 |
| C12 |
S1 |
C11 |
H11 |
180.0 |
180.0 |
| C17 |
C18 |
C19 |
H18 |
180.0 |
180.0 |
| C10 |
C11 |
S1 |
H11 |
180.0 |
180.0 |
| H11A |
C1 |
C2 |
C3 |
247.7 |
179.9 |
| C2 |
C1 |
H11A |
H12 |
120.0 |
120.0 |
| C2 |
C1 |
H11A |
H13 |
240.0 |
240.1 |
| H11A |
C1 |
C2 |
H21A |
7.7 |
299.9 |
| H11A |
C1 |
C2 |
H22 |
129.6 |
59.9 |
| H12 |
C1 |
H11A |
H13 |
120.0 |
120.0 |
| H12 |
C1 |
C2 |
C3 |
7.7 |
300.0 |
| C2 |
C1 |
H12 |
H11A |
240.0 |
240.0 |
| C2 |
C1 |
H12 |
H13 |
120.0 |
120.0 |
| H12 |
C1 |
C2 |
H21A |
127.7 |
60.0 |
| H12 |
C1 |
C2 |
H22 |
249.6 |
180.0 |
| H11A |
C1 |
H12 |
H13 |
240.0 |
240.0 |
| H13 |
C1 |
C2 |
C3 |
127.7 |
60.0 |
| C2 |
C1 |
H13 |
H11A |
120.0 |
119.9 |
| C2 |
C1 |
H13 |
H12 |
240.0 |
239.9 |
| H13 |
C1 |
C2 |
H21A |
247.7 |
180.0 |
| H13 |
C1 |
C2 |
H22 |
9.6 |
300.0 |
| H11A |
C1 |
H13 |
H12 |
120.0 |
120.0 |
| C1 |
C2 |
H21A |
C3 |
236.4 |
240.0 |
| H21A |
C2 |
C1 |
H11A |
7.7 |
299.9 |
| H21A |
C2 |
C1 |
H12 |
127.7 |
60.0 |
| H21A |
C2 |
C1 |
H13 |
247.7 |
180.0 |
| C1 |
C2 |
H21A |
H22 |
118.2 |
120.0 |
| H21A |
C2 |
C3 |
O1 |
66.4 |
59.9 |
| C3 |
C2 |
H21A |
H22 |
241.8 |
240.1 |
| H21A |
C2 |
C3 |
H31 |
186.4 |
180.0 |
| H21A |
C2 |
C3 |
H32 |
305.3 |
299.9 |
| C1 |
C2 |
H22 |
C3 |
122.4 |
120.0 |
| H22 |
C2 |
C1 |
H11A |
129.6 |
59.9 |
| H22 |
C2 |
C1 |
H12 |
249.6 |
180.0 |
| H22 |
C2 |
C1 |
H13 |
9.6 |
300.0 |
| C1 |
C2 |
H22 |
H21A |
241.2 |
240.0 |
| H22 |
C2 |
C3 |
O1 |
304.5 |
300.0 |
| C3 |
C2 |
H22 |
H21A |
118.8 |
119.9 |
| H22 |
C2 |
C3 |
H31 |
64.5 |
60.0 |
| H22 |
C2 |
C3 |
H32 |
183.4 |
180.0 |
| C2 |
C3 |
H31 |
O1 |
242.2 |
239.9 |
| H31 |
C3 |
C2 |
H21A |
186.4 |
180.0 |
| H31 |
C3 |
C2 |
H22 |
64.5 |
60.0 |
| C2 |
C3 |
H31 |
H32 |
121.1 |
120.0 |
| H31 |
C3 |
O1 |
C4 |
81.1 |
59.9 |
| O1 |
C3 |
H31 |
H32 |
238.9 |
240.0 |
| C2 |
C3 |
H32 |
O1 |
118.6 |
120.0 |
| H32 |
C3 |
C2 |
H21A |
305.3 |
299.9 |
| H32 |
C3 |
C2 |
H22 |
183.4 |
180.0 |
| C2 |
C3 |
H32 |
H31 |
239.3 |
240.0 |
| H32 |
C3 |
O1 |
C4 |
322.2 |
300.0 |
| O1 |
C3 |
H32 |
H31 |
120.7 |
120.0 |
| H5 |
C5 |
C4 |
C9 |
182.5 |
180.2 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
180.1 |
| H5 |
C5 |
C6 |
C7 |
177.4 |
180.0 |
| H5 |
C5 |
C6 |
H6 |
357.4 |
0.1 |
| C5 |
C6 |
H6 |
C7 |
180.0 |
179.9 |
| H6 |
C6 |
C5 |
H5 |
357.4 |
0.1 |
| H6 |
C6 |
C7 |
C10 |
0.3 |
359.9 |
| H8 |
C8 |
C7 |
C10 |
359.7 |
0.1 |
| C4 |
C9 |
H9 |
C8 |
180.0 |
179.7 |
| H9 |
C9 |
C8 |
H8 |
2.6 |
360.0 |
| C10 |
C11 |
H11 |
S1 |
180.0 |
180.0 |
| H141 |
C14 |
C15 |
O2 |
147.0 |
239.9 |
| C15 |
C14 |
H141 |
H142 |
120.3 |
240.1 |
| H142 |
C14 |
C15 |
O2 |
266.6 |
120.0 |
| C15 |
C14 |
H142 |
H141 |
239.8 |
119.9 |
| HN1 |
N1 |
C16 |
N2 |
188.2 |
174.9 |
| H19 |
C19 |
C18 |
H18 |
2.7 |
0.0 |
| H20 |
C20 |
C19 |
H19 |
357.6 |
359.9 |
| H21 |
C21 |
C20 |
H20 |
2.4 |
0.3 |