PDB Chemical Component 45A

Ideal Model

Chemical Description

Name 5'-O-[(S)-hydroxy(methyl)phosphoryl]adenosine
Formula C11 H16 N5 O6 P
Formal charge 0
Molecular weight 345.248 g/mol
Component type RNA LINKING
Nonstandard Parent Id A

Chemical features

Atom count 39
Chiral atom count 4
Chiral atoms C4' C3' C2' C1'
Observed leaving atoms O1
Bond count 41
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) 5'-O-[(S)-hydroxy(methyl)phosphoryl]adenosine
Systematic name (OpenEye OEToolkits) [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-methyl-phosphinic acid

Chemical Descriptors

Stereo SMILES (CACTVS) C[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23
SMILES (CACTVS) C[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23
Stereo SMILES (OpenEye) CP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O
InChI descriptor InChI=1S/C11H16N5O6P/c1-23(19,20)21-2-5-7(17)8(18)11(22-5)16-4-15-6-9(12)13-3-14-10(6)16/h3-5,7-8,11,17-18H,2H2,1H3,(H,19,20)(H2,12,13,14)/t5-,7-,8-,11-/m1/s1
InChIKey descriptor PXSSQXBLDTZHLF-IOSLPCCCSA-N

Status Information

Last modified 2019-05-07
Created 2015-02-09
Release status REL
Model PDB code 4Y27
Processing site EBI