PDB Chemical Component 45A
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 45A
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C31 |
P |
1.740 |
1.823 |
| O3' |
C3' |
1.399 |
1.429 |
| C5' |
C4' |
1.532 |
1.530 |
| C5' |
O5' |
1.423 |
1.428 |
| C3' |
C4' |
1.500 |
1.541 |
| C3' |
C2' |
1.504 |
1.548 |
| C4' |
O4' |
1.399 |
1.437 |
| P |
O5' |
1.561 |
1.610 |
| P |
OP2 |
1.461 |
1.480 |
| O2' |
C2' |
1.380 |
1.429 |
| C2' |
C1' |
1.483 |
1.550 |
| O4' |
C1' |
1.404 |
1.444 |
| C1' |
N9 |
1.446 |
1.465 |
| C8 |
N9 |
1.288 |
1.363 |
| C8 |
N7 |
1.353 |
1.301 |
| N9 |
C4 |
1.337 |
1.372 |
| N7 |
C5 |
1.466 |
1.355 |
| C4 |
N3 |
1.349 |
1.329 |
| C4 |
C5 |
1.432 |
1.405 |
| N3 |
C2 |
1.352 |
1.317 |
| C5 |
C6 |
1.385 |
1.405 |
| C2 |
N1 |
1.323 |
1.320 |
| C6 |
N1 |
1.294 |
1.329 |
| C6 |
N6 |
1.413 |
1.384 |
| P |
O1 |
1.598 |
1.611 |
| C4' |
H4' |
1.100 |
1.091 |
| C3' |
H3' |
1.100 |
1.090 |
| C2' |
H2' |
1.100 |
1.090 |
| O3' |
H1 |
0.950 |
0.967 |
| C1' |
H1' |
1.100 |
1.090 |
| C2 |
H2 |
1.080 |
1.080 |
| C31 |
H32 |
1.100 |
1.090 |
| C31 |
H33 |
1.100 |
1.090 |
| C31 |
H31 |
1.101 |
1.090 |
| C5' |
H5'1 |
1.100 |
1.091 |
| C5' |
H5'2 |
1.100 |
1.091 |
| O2' |
HO2' |
0.950 |
0.967 |
| C8 |
H8 |
1.080 |
1.080 |
| N6 |
H61 |
1.000 |
0.970 |
| N6 |
H62 |
1.000 |
0.969 |
| O1 |
H3 |
0.950 |
0.967 |
Bond Angles for 45A
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C31 |
P |
O5' |
107.9 |
109.5 |
| C31 |
P |
OP2 |
116.3 |
109.5 |
| C31 |
P |
O1 |
102.4 |
109.5 |
| O3' |
C3' |
H3' |
110.2 |
110.5 |
| C5' |
C4' |
H4' |
108.1 |
109.8 |
| C3' |
C4' |
H4' |
108.5 |
109.9 |
| C3' |
C2' |
C1' |
101.9 |
102.1 |
| C2' |
C3' |
H3' |
108.7 |
110.5 |
| C3' |
C2' |
H2' |
109.0 |
110.9 |
| C4' |
O4' |
C1' |
110.9 |
106.9 |
| OP2 |
P |
O5' |
109.3 |
109.5 |
| O5' |
P |
O1 |
106.4 |
109.5 |
| OP2 |
P |
O1 |
113.9 |
109.5 |
| O2' |
C2' |
H2' |
110.8 |
110.8 |
| O4' |
C1' |
C2' |
104.4 |
103.5 |
| C2' |
C1' |
N9 |
116.3 |
110.6 |
| C1' |
C2' |
H2' |
109.3 |
110.9 |
| C2' |
C1' |
H1' |
107.9 |
110.6 |
| O4' |
C1' |
N9 |
110.8 |
110.6 |
| O4' |
C1' |
H1' |
108.9 |
110.6 |
| C1' |
N9 |
C4 |
124.3 |
126.3 |
| N9 |
C1' |
H1' |
108.3 |
110.6 |
| N9 |
C4 |
C5 |
104.3 |
106.0 |
| N3 |
C4 |
C5 |
123.5 |
119.1 |
| C4 |
N3 |
C2 |
109.0 |
120.6 |
| N3 |
C2 |
N1 |
133.0 |
122.5 |
| N3 |
C2 |
H2 |
113.5 |
118.7 |
| C5 |
C6 |
N6 |
117.3 |
120.8 |
| C6 |
N1 |
C2 |
116.2 |
121.2 |
| N1 |
C2 |
H2 |
113.5 |
118.8 |
| N1 |
C6 |
N6 |
122.3 |
120.8 |
| C6 |
N6 |
H61 |
109.5 |
120.0 |
| C6 |
N6 |
H62 |
109.5 |
120.0 |
| P |
O1 |
H3 |
109.5 |
113.9 |
| H32 |
C31 |
H33 |
109.4 |
109.5 |
| H32 |
C31 |
H31 |
109.5 |
109.5 |
| H33 |
C31 |
H31 |
109.5 |
109.5 |
| H5'1 |
C5' |
H5'2 |
109.5 |
109.5 |
| H61 |
N6 |
H62 |
109.5 |
120.1 |
Torsion Angles for 45A
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OP2 |
P |
C31 |
O5' |
236.9 |
240.0 |
| O5' |
P |
C31 |
O1 |
248.0 |
240.0 |
| OP2 |
P |
C31 |
O1 |
124.8 |
120.0 |
| C31 |
P |
O1 |
H3 |
126.4 |
60.0 |
| O3' |
C3' |
C4' |
H4' |
317.4 |
358.7 |
| O3' |
C3' |
C2' |
C1' |
165.9 |
97.8 |
| C2' |
C3' |
O3' |
H3' |
122.6 |
122.7 |
| O3' |
C3' |
C2' |
H2' |
281.3 |
216.0 |
| C3' |
C4' |
C5' |
H4' |
239.5 |
238.9 |
| O5' |
C5' |
C4' |
H4' |
173.9 |
305.5 |
| C5' |
O5' |
P |
O1 |
296.2 |
65.0 |
| C5' |
C4' |
C3' |
H4' |
120.3 |
121.0 |
| C3' |
C4' |
O4' |
C1' |
18.4 |
26.5 |
| O3' |
C3' |
C2' |
H3' |
236.6 |
237.3 |
| C2' |
C3' |
C4' |
H4' |
79.6 |
117.4 |
| O2' |
C2' |
C3' |
H2' |
121.6 |
123.6 |
| O4' |
C1' |
C2' |
C3' |
326.8 |
37.0 |
| C3' |
C2' |
C1' |
N9 |
89.2 |
155.5 |
| C1' |
C2' |
C3' |
H2' |
244.6 |
241.8 |
| C3' |
C2' |
C1' |
H1' |
211.0 |
278.5 |
| C4' |
O4' |
C1' |
C2' |
9.5 |
320.0 |
| C4' |
O4' |
C1' |
N9 |
243.6 |
201.4 |
| C4' |
O4' |
C1' |
H1' |
124.5 |
78.5 |
| C31 |
P |
O5' |
OP2 |
232.7 |
240.0 |
| C31 |
P |
O5' |
O1 |
109.3 |
120.0 |
| OP2 |
P |
O5' |
O1 |
236.6 |
240.0 |
| O5' |
P |
O1 |
H3 |
239.6 |
180.0 |
| C31 |
P |
OP2 |
O5' |
122.4 |
120.0 |
| C31 |
P |
OP2 |
O1 |
241.2 |
240.0 |
| O5' |
P |
OP2 |
O1 |
118.8 |
120.0 |
| OP2 |
P |
O1 |
H3 |
0.0 |
300.0 |
| O2' |
C2' |
C3' |
H3' |
166.3 |
102.2 |
| C3' |
C2' |
O2' |
H2' |
239.5 |
236.4 |
| O2' |
C2' |
C1' |
N9 |
208.2 |
273.7 |
| C1' |
C2' |
O2' |
H2' |
124.9 |
123.7 |
| O2' |
C2' |
C1' |
H1' |
330.1 |
36.7 |
| C1' |
C2' |
C3' |
H3' |
289.3 |
220.5 |
| C3' |
C2' |
C1' |
H2' |
115.2 |
118.2 |
| O2' |
C2' |
C1' |
H2' |
234.3 |
236.4 |
| O4' |
C1' |
C2' |
N9 |
237.6 |
241.5 |
| O4' |
C1' |
C2' |
H1' |
115.7 |
118.6 |
| C2' |
C1' |
N9 |
C4 |
87.0 |
89.4 |
| N9 |
C1' |
C2' |
H1' |
238.1 |
237.1 |
| C3' |
C2' |
C1' |
O4' |
326.8 |
37.0 |
| C2' |
C1' |
O4' |
N9 |
125.9 |
118.5 |
| O4' |
C1' |
C2' |
H2' |
211.5 |
278.9 |
| C2' |
C1' |
O4' |
H1' |
245.0 |
241.5 |
| O4' |
C1' |
N9 |
C4 |
205.9 |
203.5 |
| N9 |
C1' |
O4' |
H1' |
119.1 |
122.9 |
| O4' |
C1' |
N9 |
C2' |
118.9 |
114.1 |
| N9 |
C1' |
C2' |
H2' |
333.9 |
37.4 |
| C2' |
C1' |
N9 |
H1' |
121.6 |
122.9 |
| O4' |
C1' |
N9 |
H1' |
240.6 |
237.1 |
| C1' |
N9 |
C4 |
C5 |
184.3 |
180.1 |
| C8 |
N9 |
C1' |
H1' |
151.7 |
146.6 |
| C4 |
N9 |
C1' |
H1' |
325.4 |
326.5 |
| N3 |
C4 |
N9 |
C5 |
179.3 |
180.1 |
| N7 |
C5 |
C6 |
N6 |
358.0 |
0.3 |
| C1' |
N9 |
C4 |
N3 |
3.6 |
0.1 |
| N9 |
C4 |
N3 |
C5 |
180.8 |
179.9 |
| C4 |
N3 |
C2 |
N1 |
1.2 |
0.5 |
| C4 |
N3 |
C2 |
H2 |
181.2 |
180.0 |
| C5 |
C4 |
N3 |
C2 |
359.8 |
359.7 |
| C4 |
C5 |
C6 |
N6 |
179.0 |
180.3 |
| C2 |
N3 |
C4 |
C5 |
359.8 |
359.7 |
| C6 |
N1 |
C2 |
N3 |
357.2 |
359.5 |
| N1 |
C2 |
N3 |
H2 |
180.0 |
180.5 |
| N1 |
C6 |
C5 |
N6 |
178.4 |
179.7 |
| C5 |
C6 |
N6 |
H61 |
178.3 |
179.7 |
| C5 |
C6 |
N6 |
H62 |
298.4 |
359.7 |
| N3 |
C2 |
N1 |
H2 |
180.0 |
179.5 |
| C2 |
N1 |
C6 |
N6 |
181.6 |
180.0 |
| N3 |
C2 |
N1 |
C6 |
357.2 |
359.5 |
| C5 |
C6 |
N1 |
N6 |
181.7 |
180.3 |
| C6 |
N1 |
C2 |
H2 |
177.1 |
180.0 |
| N1 |
C6 |
N6 |
H61 |
360.0 |
0.0 |
| N1 |
C6 |
N6 |
H62 |
120.0 |
180.0 |
| N6 |
C6 |
N1 |
C2 |
181.6 |
180.0 |
| H61 |
N6 |
C6 |
H62 |
240.0 |
180.0 |
| C31 |
P |
O1 |
O5' |
246.8 |
240.0 |
| C31 |
P |
O1 |
OP2 |
126.4 |
120.0 |
| OP2 |
P |
O1 |
O5' |
120.5 |
120.0 |
| H4' |
C4' |
O4' |
C1' |
262.1 |
267.1 |
| H3' |
C3' |
C4' |
H4' |
193.0 |
236.1 |
| H3' |
C3' |
C2' |
C1' |
289.3 |
220.5 |
| H3' |
C3' |
C2' |
H2' |
44.7 |
338.7 |
| C3' |
C2' |
H2' |
C1' |
249.4 |
247.3 |
| H2' |
C2' |
C3' |
H3' |
44.7 |
338.7 |
| H2' |
C2' |
C1' |
N9 |
333.9 |
37.4 |
| H2' |
C2' |
C1' |
H1' |
95.8 |
160.3 |
| H1 |
O3' |
C3' |
H3' |
303.6 |
302.6 |
| O4' |
C1' |
H1' |
C2' |
247.3 |
245.9 |
| C2' |
C1' |
H1' |
N9 |
233.4 |
237.1 |
| H1' |
C1' |
C2' |
H2' |
95.8 |
160.3 |
| O4' |
C1' |
H1' |
N9 |
120.6 |
122.9 |
| H1' |
C1' |
N9 |
C4 |
325.4 |
326.5 |
| N3 |
C2 |
H2 |
N1 |
180.0 |
180.5 |
| H32 |
C31 |
P |
O5' |
180.0 |
60.0 |
| H32 |
C31 |
P |
OP2 |
56.9 |
300.0 |
| H32 |
C31 |
P |
O1 |
292.1 |
180.0 |
| H33 |
C31 |
H32 |
H31 |
120.0 |
120.1 |
| H33 |
C31 |
P |
O5' |
300.0 |
180.0 |
| H33 |
C31 |
P |
OP2 |
176.9 |
60.0 |
| H33 |
C31 |
P |
O1 |
52.1 |
300.0 |
| H32 |
C31 |
H33 |
H31 |
240.0 |
239.9 |
| H31 |
C31 |
P |
O5' |
60.0 |
300.0 |
| H31 |
C31 |
P |
OP2 |
296.9 |
180.0 |
| H31 |
C31 |
P |
O1 |
172.0 |
60.0 |
| H32 |
C31 |
H31 |
H33 |
120.0 |
120.1 |
| H5'1 |
C5' |
C4' |
H4' |
294.0 |
65.5 |
| H5'2 |
C5' |
C4' |
H4' |
53.8 |
185.4 |
| HO2' |
O2' |
C2' |
H2' |
300.5 |
62.2 |
| C6 |
N6 |
H61 |
H62 |
120.0 |
180.0 |
| C6 |
N6 |
H62 |
H61 |
240.0 |
180.0 |