Atom Nomenclature for 43C

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 43C

Atom Name (V3) Atom Name (V2)
CAA C1
CAT C2
CAN C3
NAR N1
NAS N2
NAZ N3
CAO C4
CAP C5
NBA N4
CAM C6
NAQ N5
CAX C7
CAV C8
CAG C9
CAE C10
CAD C11
CAF C12
CAH C13
CAY C14
CAW C15
CAK C16
CAI C17
CAU C18
CAC C19
NAB N6
CAJ C20
CAL C21
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18