PDB Chemical Component 42Y
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 42Y
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C |
O |
1.257 |
1.209 |
| C |
CA |
1.494 |
1.507 |
| N |
CA |
1.488 |
1.468 |
| CA |
CB |
1.523 |
1.531 |
| CB |
OG |
1.408 |
1.452 |
| OAC |
C1A |
1.229 |
1.208 |
| OG |
C1A |
1.446 |
1.342 |
| C1A |
C2A |
1.515 |
1.507 |
| C2A |
C1 |
1.514 |
1.529 |
| C |
OXT |
1.330 |
1.343 |
| N |
H |
1.000 |
1.010 |
| N |
H2 |
1.000 |
1.008 |
| CA |
HA |
1.100 |
1.091 |
| CB |
H5 |
1.100 |
1.089 |
| CB |
H6 |
1.100 |
1.090 |
| C2A |
H7 |
1.100 |
1.090 |
| C2A |
H8 |
1.100 |
1.091 |
| C1 |
H9 |
1.100 |
1.090 |
| C1 |
H10 |
1.100 |
1.090 |
| C1 |
H11 |
1.100 |
1.090 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for 42Y
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
OXT |
123.5 |
120.0 |
| C |
CA |
HA |
107.7 |
109.4 |
| N |
CA |
CB |
113.1 |
109.5 |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.4 |
111.0 |
| N |
CA |
HA |
107.8 |
109.5 |
| CA |
CB |
OG |
107.7 |
109.4 |
| CB |
CA |
HA |
107.4 |
109.4 |
| CA |
CB |
H5 |
109.9 |
109.4 |
| CA |
CB |
H6 |
109.9 |
109.4 |
| CB |
OG |
C1A |
119.5 |
117.0 |
| OG |
CB |
H5 |
109.9 |
109.5 |
| OG |
CB |
H6 |
109.9 |
109.5 |
| OAC |
C1A |
C2A |
122.1 |
120.0 |
| OG |
C1A |
C2A |
119.2 |
120.0 |
| C1A |
C2A |
C1 |
109.2 |
109.5 |
| C1A |
C2A |
H7 |
109.5 |
109.5 |
| C1A |
C2A |
H8 |
109.5 |
109.5 |
| C1 |
C2A |
H7 |
109.5 |
109.5 |
| C1 |
C2A |
H8 |
109.5 |
109.5 |
| C2A |
C1 |
H9 |
109.5 |
109.4 |
| C2A |
C1 |
H10 |
109.5 |
109.5 |
| C2A |
C1 |
H11 |
109.5 |
109.5 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| H |
N |
H2 |
109.5 |
111.0 |
| H5 |
CB |
H6 |
109.5 |
109.5 |
| H7 |
C2A |
H8 |
109.5 |
109.4 |
| H9 |
C1 |
H10 |
109.4 |
109.5 |
| H9 |
C1 |
H11 |
109.5 |
109.5 |
| H10 |
C1 |
H11 |
109.5 |
109.4 |
Torsion Angles for 42Y
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
CA |
HA |
56.1 |
219.9 |
| O |
C |
OXT |
HXT |
0.0 |
0.0 |
| C |
CA |
N |
H |
180.0 |
60.0 |
| C |
CA |
N |
H2 |
300.0 |
183.9 |
| N |
CA |
C |
HA |
119.7 |
120.0 |
| CB |
CA |
C |
HA |
245.2 |
240.1 |
| C |
CA |
CB |
H5 |
293.7 |
294.9 |
| C |
CA |
CB |
H6 |
54.3 |
55.0 |
| C |
CA |
N |
HA |
240.4 |
240.0 |
| N |
CA |
CB |
OG |
300.2 |
295.0 |
| CB |
CA |
N |
HA |
118.6 |
120.0 |
| N |
CA |
CB |
H5 |
59.9 |
55.0 |
| N |
CA |
CB |
H6 |
180.5 |
175.1 |
| H |
N |
CA |
H2 |
240.0 |
236.1 |
| C |
CA |
CB |
HA |
115.0 |
119.9 |
| CB |
CA |
N |
H |
58.2 |
300.0 |
| CB |
CA |
N |
H2 |
178.2 |
63.9 |
| N |
CA |
CB |
HA |
241.2 |
240.0 |
| CA |
CB |
OG |
C1A |
96.6 |
180.0 |
| OG |
CB |
CA |
H5 |
240.3 |
240.0 |
| OG |
CB |
CA |
H6 |
119.7 |
120.0 |
| H5 |
CB |
CA |
H6 |
239.4 |
239.9 |
| OG |
CB |
CA |
HA |
59.0 |
55.0 |
| CA |
CB |
OG |
H5 |
119.7 |
119.9 |
| CA |
CB |
OG |
H6 |
240.3 |
240.0 |
| CB |
OG |
C1A |
C2A |
175.0 |
180.0 |
| H5 |
CB |
OG |
H6 |
120.5 |
120.1 |
| OG |
C1A |
OAC |
C2A |
180.7 |
180.0 |
| OAC |
C1A |
C2A |
C1 |
15.4 |
0.0 |
| OAC |
C1A |
C2A |
H7 |
135.4 |
120.0 |
| OAC |
C1A |
C2A |
H8 |
255.5 |
240.0 |
| C1A |
OG |
CB |
H5 |
336.8 |
60.0 |
| C1A |
OG |
CB |
H6 |
216.3 |
299.9 |
| OAC |
C1A |
OG |
C2A |
179.3 |
180.0 |
| OG |
C1A |
C2A |
C1 |
194.7 |
180.0 |
| OG |
C1A |
C2A |
H7 |
314.7 |
300.0 |
| OG |
C1A |
C2A |
H8 |
74.7 |
60.0 |
| C1 |
C2A |
C1A |
H7 |
240.0 |
240.0 |
| C1 |
C2A |
C1A |
H8 |
120.0 |
120.1 |
| C1A |
C2A |
C1 |
H9 |
180.0 |
300.0 |
| C1A |
C2A |
C1 |
H10 |
300.0 |
60.0 |
| C1A |
C2A |
C1 |
H11 |
60.0 |
180.0 |
| H7 |
C2A |
C1A |
H8 |
239.9 |
240.1 |
| C1A |
C2A |
C1 |
H7 |
120.0 |
120.0 |
| C1A |
C2A |
C1 |
H8 |
240.0 |
240.0 |
| H7 |
C2A |
C1 |
H8 |
120.0 |
120.0 |
| H9 |
C1 |
C2A |
H10 |
240.0 |
240.0 |
| H9 |
C1 |
C2A |
H11 |
120.0 |
120.0 |
| H10 |
C1 |
C2A |
H11 |
240.0 |
240.0 |
| OXT |
C |
CA |
HA |
235.9 |
40.0 |
| H |
N |
CA |
CB |
58.2 |
300.0 |
| CA |
N |
H |
H2 |
120.0 |
124.0 |
| H |
N |
CA |
HA |
299.6 |
180.0 |
| H2 |
N |
CA |
CB |
178.2 |
63.9 |
| CA |
N |
H2 |
H |
240.0 |
236.1 |
| H2 |
N |
CA |
HA |
59.6 |
303.9 |
| N |
CA |
HA |
CB |
122.2 |
120.0 |
| HA |
CA |
N |
H |
299.6 |
180.0 |
| HA |
CA |
N |
H2 |
59.6 |
303.9 |
| HA |
CA |
CB |
OG |
59.0 |
55.0 |
| HA |
CA |
CB |
H5 |
178.7 |
175.0 |
| HA |
CA |
CB |
H6 |
299.3 |
295.0 |
| CA |
CB |
H5 |
OG |
241.6 |
240.0 |
| H5 |
CB |
CA |
HA |
178.7 |
175.0 |
| CA |
CB |
H5 |
H6 |
120.8 |
120.0 |
| H5 |
CB |
OG |
C1A |
336.8 |
60.0 |
| OG |
CB |
H5 |
H6 |
239.2 |
239.9 |
| CA |
CB |
H6 |
OG |
118.4 |
120.0 |
| H6 |
CB |
CA |
HA |
299.3 |
295.0 |
| CA |
CB |
H6 |
H5 |
239.2 |
240.0 |
| H6 |
CB |
OG |
C1A |
216.3 |
299.9 |
| OG |
CB |
H6 |
H5 |
120.8 |
120.0 |
| C1A |
C2A |
H7 |
C1 |
240.2 |
240.0 |
| C1A |
C2A |
H7 |
H8 |
120.1 |
120.0 |
| C1 |
C2A |
H7 |
H8 |
239.9 |
240.0 |
| H7 |
C2A |
C1 |
H9 |
60.0 |
180.0 |
| H7 |
C2A |
C1 |
H10 |
180.0 |
300.0 |
| H7 |
C2A |
C1 |
H11 |
300.0 |
60.0 |
| C1A |
C2A |
H8 |
C1 |
119.8 |
120.0 |
| C1A |
C2A |
H8 |
H7 |
239.9 |
240.0 |
| C1 |
C2A |
H8 |
H7 |
120.1 |
120.0 |
| H8 |
C2A |
C1 |
H9 |
300.0 |
60.0 |
| H8 |
C2A |
C1 |
H10 |
60.0 |
180.0 |
| H8 |
C2A |
C1 |
H11 |
180.0 |
300.0 |
| H9 |
C1 |
C2A |
H7 |
60.0 |
180.0 |
| H9 |
C1 |
C2A |
H8 |
300.0 |
60.0 |
| C2A |
C1 |
H9 |
H10 |
120.0 |
120.0 |
| C2A |
C1 |
H9 |
H11 |
240.0 |
240.0 |
| H10 |
C1 |
H9 |
H11 |
120.0 |
120.0 |
| H10 |
C1 |
C2A |
H7 |
180.0 |
300.0 |
| H10 |
C1 |
C2A |
H8 |
60.0 |
180.0 |
| C2A |
C1 |
H10 |
H9 |
240.0 |
240.0 |
| C2A |
C1 |
H10 |
H11 |
120.0 |
120.0 |
| H9 |
C1 |
H10 |
H11 |
240.0 |
240.0 |
| H11 |
C1 |
C2A |
H7 |
300.0 |
60.0 |
| H11 |
C1 |
C2A |
H8 |
180.0 |
300.0 |
| C2A |
C1 |
H11 |
H9 |
120.0 |
120.0 |
| C2A |
C1 |
H11 |
H10 |
240.0 |
240.0 |
| H9 |
C1 |
H11 |
H10 |
120.0 |
120.0 |