PDB Chemical Component 41N
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 41N
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O10 |
C9 |
1.441 |
1.440 |
| O10 |
C7 |
1.361 |
1.364 |
| C9 |
O8 |
1.438 |
1.445 |
| C7 |
C2 |
1.381 |
1.389 |
| C7 |
C6 |
1.356 |
1.395 |
| O8 |
C6 |
1.368 |
1.366 |
| C2 |
C3 |
1.382 |
1.378 |
| C6 |
C5 |
1.387 |
1.382 |
| C3 |
C4 |
1.392 |
1.396 |
| C5 |
C4 |
1.388 |
1.398 |
| C4 |
C11 |
1.494 |
1.476 |
| C11 |
O12 |
1.218 |
1.216 |
| C11 |
N13 |
1.313 |
1.348 |
| C18 |
N13 |
1.464 |
1.471 |
| C18 |
C17 |
1.524 |
1.532 |
| N13 |
C14 |
1.463 |
1.471 |
| C17 |
N16 |
1.459 |
1.470 |
| C14 |
C15 |
1.513 |
1.532 |
| N16 |
C15 |
1.450 |
1.469 |
| N16 |
C20 |
1.396 |
1.389 |
| C25 |
C20 |
1.394 |
1.393 |
| C25 |
C24 |
1.395 |
1.366 |
| C20 |
C21 |
1.393 |
1.393 |
| C24 |
C23 |
1.396 |
1.401 |
| C21 |
C22 |
1.387 |
1.365 |
| C23 |
C22 |
1.392 |
1.402 |
| C23 |
C26 |
1.493 |
1.468 |
| C27 |
C26 |
1.497 |
1.507 |
| C26 |
O28 |
1.220 |
1.213 |
| C3 |
H1 |
1.080 |
1.080 |
| C14 |
H2 |
1.100 |
1.090 |
| C14 |
H3 |
1.100 |
1.090 |
| C15 |
H4 |
1.100 |
1.090 |
| C15 |
H5 |
1.100 |
1.090 |
| C2 |
H6 |
1.080 |
1.081 |
| C5 |
H7 |
1.080 |
1.079 |
| C9 |
H8 |
1.100 |
1.090 |
| C9 |
H9 |
1.100 |
1.090 |
| C17 |
H10 |
1.100 |
1.090 |
| C17 |
H11 |
1.100 |
1.089 |
| C18 |
H12 |
1.100 |
1.090 |
| C18 |
H13 |
1.100 |
1.090 |
| C21 |
H14 |
1.080 |
1.081 |
| C22 |
H15 |
1.080 |
1.080 |
| C24 |
H16 |
1.080 |
1.080 |
| C25 |
H17 |
1.080 |
1.080 |
| C27 |
H18 |
1.100 |
1.090 |
| C27 |
H19 |
1.099 |
1.090 |
| C27 |
H20 |
1.100 |
1.090 |
Bond Angles for 41N
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O10 |
C9 |
H8 |
110.9 |
110.2 |
| O10 |
C9 |
H9 |
110.9 |
111.2 |
| C7 |
C2 |
H6 |
121.6 |
119.9 |
| O8 |
C6 |
C5 |
129.1 |
131.4 |
| C2 |
C3 |
H1 |
119.3 |
120.0 |
| C6 |
C5 |
H7 |
121.7 |
120.1 |
| C3 |
C4 |
C11 |
117.4 |
120.1 |
| C4 |
C3 |
H1 |
119.3 |
120.0 |
| C4 |
C11 |
O12 |
117.9 |
120.0 |
| C4 |
C11 |
N13 |
122.5 |
120.0 |
| O12 |
C11 |
N13 |
119.5 |
120.0 |
| C11 |
N13 |
C14 |
118.3 |
120.8 |
| C18 |
C17 |
H10 |
110.5 |
109.5 |
| C18 |
C17 |
H11 |
110.5 |
109.5 |
| N13 |
C14 |
H2 |
109.7 |
109.6 |
| N13 |
C14 |
H3 |
109.7 |
109.7 |
| C17 |
N16 |
C20 |
119.5 |
111.0 |
| C15 |
C14 |
H2 |
109.7 |
109.7 |
| C15 |
C14 |
H3 |
109.7 |
109.7 |
| C14 |
C15 |
H4 |
110.1 |
109.5 |
| C14 |
C15 |
H5 |
110.2 |
109.5 |
| N16 |
C15 |
H4 |
110.1 |
109.5 |
| N16 |
C15 |
H5 |
110.1 |
109.5 |
| N16 |
C20 |
C21 |
119.0 |
119.9 |
| C25 |
C24 |
H16 |
120.1 |
120.1 |
| C20 |
C21 |
C22 |
119.8 |
120.2 |
| C20 |
C21 |
H14 |
120.1 |
119.9 |
| C24 |
C23 |
C26 |
120.9 |
120.1 |
| C22 |
C21 |
H14 |
120.1 |
119.9 |
| C21 |
C22 |
H15 |
119.8 |
120.1 |
| C23 |
C22 |
H15 |
119.8 |
120.1 |
| C23 |
C26 |
O28 |
119.6 |
120.0 |
| C27 |
C26 |
O28 |
120.6 |
120.0 |
| H2 |
C14 |
H3 |
109.5 |
109.6 |
| H4 |
C15 |
H5 |
109.5 |
109.5 |
| H8 |
C9 |
H9 |
109.5 |
110.5 |
| H10 |
C17 |
H11 |
109.5 |
109.5 |
| H12 |
C18 |
H13 |
109.4 |
109.8 |
| H18 |
C27 |
H19 |
109.5 |
109.5 |
| H18 |
C27 |
H20 |
109.5 |
109.4 |
| H19 |
C27 |
H20 |
109.5 |
109.5 |
Torsion Angles for 41N
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H8 |
C9 |
O10 |
H9 |
238.1 |
122.9 |
| O10 |
C7 |
C2 |
H6 |
359.5 |
0.1 |
| C7 |
C2 |
C3 |
H1 |
180.5 |
180.3 |
| C6 |
C7 |
C2 |
H6 |
180.2 |
179.6 |
| C7 |
C6 |
C5 |
H7 |
178.0 |
179.5 |
| O8 |
C6 |
C5 |
H7 |
359.5 |
360.0 |
| C4 |
C3 |
C2 |
H1 |
180.0 |
179.7 |
| C2 |
C3 |
C4 |
H1 |
180.0 |
180.3 |
| C3 |
C4 |
C11 |
O12 |
73.6 |
315.0 |
| C3 |
C4 |
C11 |
N13 |
255.6 |
135.0 |
| C5 |
C4 |
C3 |
H1 |
178.0 |
180.0 |
| C5 |
C4 |
C11 |
O12 |
257.3 |
135.0 |
| C5 |
C4 |
C11 |
N13 |
79.2 |
315.0 |
| C11 |
C4 |
C3 |
H1 |
1.6 |
359.9 |
| O12 |
C11 |
C4 |
N13 |
178.1 |
180.0 |
| C4 |
C11 |
N13 |
C14 |
175.0 |
184.2 |
| C4 |
C11 |
O12 |
N13 |
181.9 |
180.0 |
| O12 |
C11 |
N13 |
C14 |
357.0 |
4.2 |
| C4 |
C11 |
N13 |
O12 |
178.0 |
180.0 |
| C11 |
N13 |
C14 |
H2 |
284.9 |
9.1 |
| C11 |
N13 |
C14 |
H3 |
45.2 |
248.6 |
| C18 |
N13 |
C14 |
H2 |
105.3 |
189.1 |
| C18 |
N13 |
C14 |
H3 |
225.6 |
68.6 |
| C18 |
C17 |
N16 |
C20 |
154.7 |
187.2 |
| H10 |
C17 |
C18 |
H11 |
238.7 |
120.1 |
| C15 |
C14 |
N13 |
H2 |
240.2 |
119.7 |
| C15 |
C14 |
N13 |
H3 |
119.8 |
240.2 |
| N13 |
C14 |
C15 |
H4 |
177.1 |
173.8 |
| N13 |
C14 |
C15 |
H5 |
298.0 |
293.8 |
| H2 |
C14 |
N13 |
H3 |
239.6 |
120.5 |
| C17 |
N16 |
C15 |
H4 |
200.9 |
176.9 |
| C17 |
N16 |
C15 |
H5 |
80.0 |
56.8 |
| C17 |
N16 |
C20 |
C21 |
196.2 |
55.7 |
| C11 |
N13 |
C14 |
C15 |
165.1 |
128.8 |
| N13 |
C14 |
C15 |
H2 |
119.8 |
240.3 |
| N13 |
C14 |
C15 |
H3 |
240.1 |
119.9 |
| N16 |
C15 |
C14 |
H4 |
240.4 |
240.0 |
| N16 |
C15 |
C14 |
H5 |
119.6 |
120.0 |
| H2 |
C14 |
C15 |
H3 |
120.3 |
239.6 |
| H4 |
C15 |
C14 |
H5 |
239.1 |
240.0 |
| N16 |
C15 |
C14 |
H2 |
297.7 |
173.5 |
| N16 |
C15 |
C14 |
H3 |
177.4 |
294.0 |
| C14 |
C15 |
N16 |
H4 |
119.6 |
120.0 |
| C14 |
C15 |
N16 |
H5 |
240.4 |
240.0 |
| H4 |
C15 |
N16 |
H5 |
120.9 |
120.1 |
| C20 |
N16 |
C15 |
H4 |
24.4 |
52.8 |
| C20 |
N16 |
C15 |
H5 |
263.5 |
292.7 |
| N16 |
C20 |
C21 |
C22 |
178.1 |
179.9 |
| N16 |
C20 |
C21 |
H14 |
358.1 |
359.9 |
| C25 |
C20 |
C21 |
H14 |
180.1 |
180.3 |
| C25 |
C24 |
C23 |
C26 |
180.0 |
179.7 |
| C22 |
C21 |
C20 |
H14 |
180.0 |
180.0 |
| C20 |
C21 |
C22 |
H15 |
180.5 |
180.0 |
| C24 |
C23 |
C22 |
H15 |
179.0 |
180.0 |
| C24 |
C23 |
C26 |
O28 |
178.1 |
185.6 |
| C20 |
C21 |
C22 |
H14 |
180.0 |
180.0 |
| C23 |
C22 |
C21 |
H15 |
180.0 |
180.0 |
| C23 |
C22 |
C21 |
H14 |
180.5 |
180.0 |
| C21 |
C22 |
C23 |
H15 |
180.0 |
180.0 |
| C26 |
C23 |
C22 |
H15 |
359.9 |
0.0 |
| C27 |
C26 |
C23 |
O28 |
179.0 |
180.0 |
| C23 |
C26 |
C27 |
O28 |
181.0 |
180.0 |
| H1 |
C3 |
C4 |
C11 |
1.6 |
359.9 |
| N13 |
C14 |
H2 |
H3 |
120.5 |
239.5 |
| C15 |
C14 |
H2 |
H3 |
239.6 |
120.4 |
| H2 |
C14 |
C15 |
H4 |
57.3 |
293.5 |
| H2 |
C14 |
C15 |
H5 |
178.1 |
53.5 |
| N13 |
C14 |
H3 |
H2 |
239.5 |
120.5 |
| C15 |
C14 |
H3 |
H2 |
120.4 |
239.6 |
| H3 |
C14 |
C15 |
H4 |
296.9 |
53.9 |
| H3 |
C14 |
C15 |
H5 |
57.8 |
174.0 |
| H4 |
C15 |
C14 |
H2 |
57.3 |
293.5 |
| H4 |
C15 |
C14 |
H3 |
296.9 |
53.9 |
| C14 |
C15 |
H4 |
H5 |
121.3 |
120.0 |
| N16 |
C15 |
H4 |
H5 |
238.8 |
239.9 |
| H5 |
C15 |
C14 |
H2 |
178.1 |
53.5 |
| H5 |
C15 |
C14 |
H3 |
57.8 |
174.0 |
| C14 |
C15 |
H5 |
H4 |
238.7 |
240.0 |
| N16 |
C15 |
H5 |
H4 |
121.2 |
120.1 |
| H6 |
C2 |
C3 |
H1 |
0.5 |
0.2 |
| O10 |
C9 |
H8 |
H9 |
122.7 |
236.6 |
| O10 |
C9 |
H9 |
H8 |
237.3 |
122.7 |
| C18 |
C17 |
H10 |
H11 |
121.9 |
239.9 |
| H10 |
C17 |
N16 |
C20 |
35.3 |
307.2 |
| C18 |
C17 |
H11 |
H10 |
238.1 |
120.1 |
| H11 |
C17 |
N16 |
C20 |
274.0 |
67.2 |
| H12 |
C18 |
C17 |
H10 |
64.4 |
66.5 |
| H12 |
C18 |
C17 |
H11 |
185.7 |
306.4 |
| H13 |
C18 |
C17 |
H10 |
303.1 |
305.9 |
| H13 |
C18 |
C17 |
H11 |
64.4 |
185.8 |
| C20 |
C21 |
H14 |
C22 |
180.0 |
180.0 |
| H14 |
C21 |
C22 |
H15 |
0.5 |
0.0 |
| H15 |
C22 |
C21 |
H14 |
0.5 |
0.0 |
| H16 |
C24 |
C23 |
C26 |
360.0 |
359.9 |
| H17 |
C25 |
C24 |
H16 |
359.7 |
0.1 |
| H18 |
C27 |
C26 |
O28 |
360.0 |
174.9 |
| H19 |
C27 |
H18 |
H20 |
120.0 |
120.1 |
| H19 |
C27 |
C26 |
O28 |
120.0 |
294.9 |
| H18 |
C27 |
H19 |
H20 |
240.0 |
240.0 |
| H20 |
C27 |
C26 |
O28 |
240.0 |
55.0 |
| H18 |
C27 |
H20 |
H19 |
120.0 |
120.0 |