PDB Chemical Component 411
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 411
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| BR |
C25 |
1.886 |
1.891 |
| C25 |
C26 |
1.395 |
1.380 |
| C25 |
C24 |
1.399 |
1.385 |
| C26 |
C21 |
1.402 |
1.396 |
| C24 |
C23 |
1.398 |
1.383 |
| N4 |
C13 |
1.379 |
1.374 |
| C21 |
C20 |
1.484 |
1.479 |
| C21 |
C22 |
1.409 |
1.395 |
| C23 |
C22 |
1.400 |
1.380 |
| C20 |
N5 |
1.392 |
1.347 |
| C20 |
O2 |
1.223 |
1.215 |
| N5 |
C17 |
1.420 |
1.398 |
| N2 |
C13 |
1.394 |
1.382 |
| N2 |
C12 |
1.437 |
1.349 |
| C16 |
C17 |
1.408 |
1.391 |
| C16 |
C15 |
1.411 |
1.378 |
| C13 |
N3 |
1.387 |
1.303 |
| C17 |
C18 |
1.402 |
1.389 |
| C11 |
C12 |
1.505 |
1.507 |
| C11 |
N1 |
1.459 |
1.464 |
| C15 |
C14 |
1.408 |
1.397 |
| C6 |
C5 |
1.403 |
1.380 |
| C6 |
C1 |
1.400 |
1.384 |
| C12 |
O1 |
1.226 |
1.212 |
| C5 |
C4 |
1.409 |
1.396 |
| C18 |
C19 |
1.394 |
1.379 |
| C14 |
C19 |
1.404 |
1.397 |
| C14 |
C10 |
1.474 |
1.477 |
| N1 |
C10 |
1.393 |
1.372 |
| N1 |
C7 |
1.387 |
1.373 |
| C1 |
C2 |
1.400 |
1.384 |
| C10 |
C9 |
1.389 |
1.365 |
| C4 |
C7 |
1.466 |
1.478 |
| C4 |
C3 |
1.408 |
1.396 |
| C7 |
C8 |
1.386 |
1.364 |
| C2 |
C3 |
1.405 |
1.380 |
| C9 |
C8 |
1.417 |
1.398 |
| C1 |
H1 |
1.081 |
1.080 |
| C2 |
H2 |
1.080 |
1.080 |
| C3 |
H3 |
1.080 |
1.080 |
| C5 |
H5 |
1.080 |
1.081 |
| C6 |
H6 |
1.081 |
1.079 |
| C8 |
H8 |
1.080 |
1.080 |
| C9 |
H9 |
1.080 |
1.080 |
| C11 |
H11 |
1.100 |
1.090 |
| C11 |
H11A |
1.099 |
1.089 |
| N2 |
HN2 |
1.000 |
0.970 |
| N3 |
HN3 |
1.000 |
0.970 |
| N4 |
HN4 |
1.000 |
0.970 |
| N4 |
HN4A |
1.000 |
0.970 |
| C15 |
H15 |
1.081 |
1.080 |
| C16 |
H16 |
1.080 |
1.080 |
| C18 |
H18 |
1.080 |
1.080 |
| C19 |
H19 |
1.080 |
1.080 |
| N5 |
HN5 |
1.000 |
0.970 |
| C22 |
H22 |
1.080 |
1.080 |
| C23 |
H23 |
1.080 |
1.080 |
| C24 |
H24 |
1.080 |
1.080 |
| C26 |
H26 |
1.080 |
1.080 |
Bond Angles for 411
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C25 |
C26 |
H26 |
120.5 |
120.1 |
| C25 |
C24 |
H24 |
120.3 |
119.9 |
| C24 |
C23 |
H23 |
120.1 |
119.9 |
| C21 |
C22 |
H22 |
119.9 |
120.1 |
| C23 |
C22 |
H22 |
120.0 |
120.1 |
| C20 |
N5 |
HN5 |
116.1 |
120.0 |
| N2 |
C13 |
N3 |
119.6 |
120.0 |
| C13 |
N2 |
HN2 |
117.5 |
120.0 |
| C16 |
C17 |
C18 |
118.8 |
120.2 |
| C17 |
C16 |
H16 |
119.9 |
119.9 |
| C16 |
C15 |
H15 |
119.7 |
120.0 |
| C13 |
N3 |
HN3 |
109.3 |
119.9 |
| C17 |
C18 |
C19 |
121.0 |
120.1 |
| C17 |
C18 |
H18 |
119.5 |
120.0 |
| C11 |
C12 |
O1 |
124.4 |
120.0 |
| C12 |
C11 |
H11 |
110.1 |
109.5 |
| C12 |
C11 |
H11A |
110.6 |
109.5 |
| C15 |
C14 |
C19 |
118.7 |
119.8 |
| C6 |
C5 |
H5 |
119.7 |
120.0 |
| C6 |
C1 |
H1 |
119.9 |
119.9 |
| C5 |
C4 |
C7 |
120.8 |
120.2 |
| C14 |
C19 |
C18 |
120.8 |
119.9 |
| C19 |
C18 |
H18 |
119.5 |
119.9 |
| C18 |
C19 |
H19 |
119.6 |
120.1 |
| C14 |
C19 |
H19 |
119.6 |
120.0 |
| C1 |
C2 |
C3 |
120.1 |
120.2 |
| C2 |
C1 |
H1 |
119.9 |
119.8 |
| C1 |
C2 |
H2 |
120.0 |
120.0 |
| C10 |
C9 |
H9 |
125.9 |
126.1 |
| C4 |
C7 |
C8 |
129.3 |
126.0 |
| C4 |
C3 |
H3 |
119.9 |
120.1 |
| C7 |
C8 |
H8 |
125.8 |
126.1 |
| C3 |
C2 |
H2 |
119.9 |
119.9 |
| C2 |
C3 |
H3 |
119.9 |
120.1 |
| C9 |
C8 |
H8 |
125.8 |
126.2 |
| H11 |
C11 |
H11A |
108.0 |
109.4 |
| HN4 |
N4 |
HN4A |
125.3 |
120.0 |
Torsion Angles for 411
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| BR |
C25 |
C26 |
H26 |
0.2 |
359.4 |
| BR |
C25 |
C24 |
H24 |
0.1 |
0.2 |
| C26 |
C25 |
C24 |
H24 |
180.5 |
179.6 |
| C25 |
C24 |
C23 |
H23 |
179.5 |
180.0 |
| C26 |
C21 |
C22 |
H22 |
180.2 |
180.3 |
| C24 |
C23 |
C22 |
H22 |
180.2 |
180.1 |
| N4 |
C13 |
N2 |
HN2 |
358.9 |
360.0 |
| N4 |
C13 |
N3 |
HN3 |
0.4 |
0.0 |
| C21 |
C20 |
N5 |
HN5 |
358.1 |
5.2 |
| C23 |
C22 |
C21 |
H22 |
180.0 |
180.0 |
| C21 |
C22 |
C23 |
H22 |
180.0 |
180.0 |
| O2 |
C20 |
N5 |
HN5 |
178.5 |
185.2 |
| N5 |
C17 |
C16 |
H16 |
1.4 |
0.0 |
| N5 |
C17 |
C18 |
H18 |
358.9 |
359.9 |
| N2 |
C13 |
N3 |
HN3 |
179.6 |
180.0 |
| N2 |
C12 |
C11 |
H11 |
328.2 |
60.0 |
| N2 |
C12 |
C11 |
H11A |
87.4 |
300.0 |
| C17 |
C16 |
C15 |
H15 |
180.5 |
180.0 |
| C16 |
C17 |
C18 |
C19 |
0.6 |
0.1 |
| C16 |
C17 |
C18 |
H18 |
180.7 |
180.0 |
| C16 |
C15 |
C14 |
C19 |
359.7 |
359.9 |
| N3 |
C13 |
N2 |
HN2 |
179.7 |
180.0 |
| C18 |
C17 |
C16 |
H16 |
179.3 |
180.0 |
| C14 |
C19 |
C18 |
C17 |
359.6 |
359.9 |
| C19 |
C18 |
C17 |
H18 |
180.0 |
180.1 |
| C17 |
C18 |
C19 |
H19 |
179.5 |
180.2 |
| H11 |
C11 |
C12 |
H11A |
240.8 |
119.9 |
| C15 |
C14 |
C19 |
C18 |
0.3 |
0.1 |
| C15 |
C14 |
C19 |
H19 |
180.3 |
179.8 |
| C5 |
C6 |
C1 |
H1 |
180.1 |
179.8 |
| C6 |
C5 |
C4 |
C7 |
179.5 |
179.8 |
| C2 |
C1 |
C6 |
H1 |
180.0 |
179.7 |
| C6 |
C1 |
C2 |
H2 |
179.7 |
180.2 |
| O1 |
C12 |
C11 |
H11 |
147.3 |
239.9 |
| O1 |
C12 |
C11 |
H11A |
266.5 |
120.0 |
| C5 |
C4 |
C7 |
C8 |
111.8 |
201.9 |
| C5 |
C4 |
C3 |
H3 |
179.6 |
180.0 |
| C17 |
C18 |
C19 |
H18 |
180.0 |
179.9 |
| C14 |
C19 |
C18 |
H19 |
180.0 |
179.7 |
| C17 |
C18 |
C19 |
C14 |
359.6 |
359.9 |
| C14 |
C19 |
C18 |
H18 |
179.5 |
180.0 |
| C18 |
C19 |
C14 |
H19 |
180.0 |
180.3 |
| C14 |
C10 |
C9 |
H9 |
0.4 |
0.0 |
| N1 |
C10 |
C9 |
H9 |
179.4 |
179.7 |
| N1 |
C7 |
C8 |
H8 |
179.3 |
180.2 |
| C6 |
C1 |
C2 |
H1 |
180.0 |
180.3 |
| C3 |
C2 |
C1 |
H2 |
180.0 |
180.1 |
| C1 |
C2 |
C3 |
H3 |
180.5 |
179.9 |
| C10 |
C9 |
C8 |
H8 |
180.8 |
180.0 |
| C7 |
C4 |
C3 |
H3 |
0.3 |
0.0 |
| C4 |
C7 |
C8 |
H8 |
359.8 |
0.0 |
| C4 |
C3 |
C2 |
H2 |
180.5 |
180.0 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
180.0 |
| C9 |
C8 |
C7 |
H8 |
180.0 |
180.0 |
| C3 |
C2 |
C1 |
H1 |
179.7 |
180.0 |
| C1 |
C2 |
C3 |
H2 |
180.0 |
179.9 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
180.0 |
| C7 |
C8 |
C9 |
H8 |
180.0 |
180.0 |
| H1 |
C1 |
C2 |
C3 |
179.7 |
180.0 |
| H1 |
C1 |
C2 |
H2 |
359.7 |
359.9 |
| C1 |
C2 |
H2 |
C3 |
180.0 |
180.1 |
| H2 |
C2 |
C1 |
H1 |
359.7 |
359.9 |
| H2 |
C2 |
C3 |
H3 |
0.5 |
0.0 |
| H3 |
C3 |
C2 |
H2 |
0.5 |
0.0 |
| H5 |
C5 |
C4 |
C7 |
359.5 |
359.9 |
| H6 |
C6 |
C5 |
H5 |
0.0 |
359.8 |
| H6 |
C6 |
C1 |
H1 |
0.1 |
0.3 |
| H9 |
C9 |
C8 |
H8 |
0.7 |
360.0 |
| H11 |
C11 |
C12 |
O1 |
147.3 |
239.9 |
| C12 |
C11 |
H11 |
H11A |
120.8 |
240.0 |
| H11A |
C11 |
C12 |
O1 |
266.5 |
120.0 |
| C12 |
C11 |
H11A |
H11 |
239.5 |
120.0 |
| HN2 |
N2 |
C13 |
N3 |
179.7 |
180.0 |
| H15 |
C15 |
C14 |
C19 |
179.7 |
180.0 |
| H16 |
C16 |
C17 |
C18 |
179.3 |
180.0 |
| H16 |
C16 |
C15 |
H15 |
0.5 |
360.0 |
| C17 |
C18 |
H18 |
C19 |
180.0 |
180.1 |
| H18 |
C18 |
C19 |
H19 |
359.5 |
0.3 |
| C14 |
C19 |
H19 |
C18 |
180.0 |
180.3 |
| H19 |
C19 |
C18 |
H18 |
359.5 |
0.3 |
| H23 |
C23 |
C22 |
H22 |
0.2 |
360.0 |
| H24 |
C24 |
C23 |
H23 |
359.5 |
0.1 |