PDB Chemical Component 40X
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 40X
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C20 |
C17 |
1.533 |
1.530 |
O1 |
C15 |
1.227 |
1.217 |
C21 |
C17 |
1.524 |
1.530 |
C |
C1 |
1.530 |
1.530 |
C17 |
C16 |
1.532 |
1.531 |
C17 |
C18 |
1.539 |
1.531 |
O |
C14 |
1.387 |
1.354 |
O |
C3 |
1.461 |
1.430 |
C13 |
C14 |
1.391 |
1.379 |
C13 |
C12 |
1.409 |
1.399 |
C15 |
C12 |
1.504 |
1.475 |
C15 |
N1 |
1.326 |
1.348 |
C16 |
C8 |
1.498 |
1.507 |
C14 |
C9 |
1.404 |
1.401 |
C18 |
C19 |
1.514 |
1.522 |
C12 |
C11 |
1.405 |
1.399 |
C3 |
C2 |
1.501 |
1.530 |
C3 |
C4 |
1.526 |
1.533 |
C19 |
O2 |
1.230 |
1.214 |
C19 |
C7 |
1.473 |
1.466 |
C8 |
C7 |
1.386 |
1.391 |
C8 |
N |
1.374 |
1.334 |
C1 |
C2 |
1.502 |
1.530 |
C9 |
N |
1.438 |
1.403 |
C9 |
C10 |
1.387 |
1.383 |
C7 |
C6 |
1.446 |
1.454 |
N |
C5 |
1.383 |
1.379 |
C11 |
C10 |
1.382 |
1.382 |
C11 |
CL |
1.729 |
1.736 |
C6 |
C5 |
1.368 |
1.343 |
C6 |
C22 |
1.506 |
1.507 |
C5 |
C4 |
1.460 |
1.508 |
N1 |
H1 |
1.000 |
0.970 |
N1 |
H2 |
1.000 |
0.970 |
C4 |
H3 |
1.100 |
1.090 |
C4 |
H4 |
1.100 |
1.090 |
C10 |
H5 |
1.080 |
1.079 |
C13 |
H6 |
1.080 |
1.080 |
C20 |
H7 |
1.100 |
1.090 |
C20 |
H8 |
1.101 |
1.090 |
C20 |
H9 |
1.100 |
1.090 |
C21 |
H10 |
1.100 |
1.090 |
C21 |
H11 |
1.100 |
1.090 |
C21 |
H12 |
1.099 |
1.090 |
C22 |
H13 |
1.100 |
1.090 |
C22 |
H14 |
1.100 |
1.090 |
C22 |
H15 |
1.100 |
1.091 |
C18 |
H16 |
1.100 |
1.090 |
C18 |
H17 |
1.100 |
1.090 |
C16 |
H18 |
1.100 |
1.090 |
C16 |
H19 |
1.100 |
1.090 |
C3 |
H20 |
1.100 |
1.090 |
C2 |
H21 |
1.100 |
1.089 |
C2 |
H22 |
1.100 |
1.090 |
C1 |
H23 |
1.101 |
1.090 |
C1 |
H24 |
1.100 |
1.090 |
C |
H25 |
1.100 |
1.090 |
C |
H26 |
1.100 |
1.090 |
C |
H27 |
1.100 |
1.090 |
Bond Angles for 40X
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C20 |
C17 |
C16 |
109.8 |
109.2 |
C20 |
C17 |
C18 |
110.3 |
109.2 |
C21 |
C17 |
C16 |
109.1 |
109.2 |
C21 |
C17 |
C18 |
109.8 |
109.2 |
C |
C1 |
H23 |
108.5 |
109.5 |
C |
C1 |
H24 |
108.5 |
109.5 |
C18 |
C17 |
C16 |
108.8 |
110.8 |
C17 |
C16 |
H18 |
108.4 |
109.5 |
C17 |
C16 |
H19 |
108.4 |
109.5 |
C17 |
C18 |
C19 |
116.0 |
108.4 |
C17 |
C18 |
H16 |
107.8 |
109.7 |
C17 |
C18 |
H17 |
107.8 |
109.7 |
O |
C3 |
C2 |
112.0 |
109.4 |
O |
C3 |
H20 |
101.2 |
109.4 |
C14 |
C13 |
C12 |
119.2 |
119.8 |
C13 |
C14 |
C9 |
121.1 |
119.8 |
C14 |
C13 |
H6 |
120.4 |
120.1 |
C13 |
C12 |
C15 |
117.1 |
120.0 |
C13 |
C12 |
C11 |
118.6 |
120.0 |
C12 |
C13 |
H6 |
120.4 |
120.1 |
C15 |
C12 |
C11 |
124.2 |
120.0 |
C15 |
N1 |
H1 |
120.0 |
120.0 |
C15 |
N1 |
H2 |
120.0 |
120.0 |
C16 |
C8 |
N |
125.9 |
129.8 |
C12 |
C11 |
CL |
122.2 |
120.0 |
C2 |
C3 |
H20 |
100.9 |
109.4 |
C3 |
C2 |
H21 |
108.6 |
109.5 |
C3 |
C2 |
H22 |
108.6 |
109.5 |
C3 |
C4 |
H3 |
109.2 |
109.4 |
C3 |
C4 |
H4 |
109.2 |
109.5 |
C1 |
C2 |
H21 |
108.6 |
109.5 |
C1 |
C2 |
H22 |
108.6 |
109.4 |
C9 |
C10 |
H5 |
120.3 |
120.1 |
C7 |
C6 |
C22 |
124.6 |
127.0 |
C11 |
C10 |
H5 |
120.3 |
120.1 |
C6 |
C22 |
H13 |
109.5 |
109.5 |
C6 |
C22 |
H14 |
109.4 |
109.5 |
C6 |
C22 |
H15 |
109.5 |
109.5 |
C5 |
C4 |
H3 |
109.2 |
109.5 |
C5 |
C4 |
H4 |
109.2 |
109.5 |
H1 |
N1 |
H2 |
120.0 |
120.0 |
H3 |
C4 |
H4 |
109.5 |
109.5 |
H7 |
C20 |
H8 |
109.4 |
109.4 |
H7 |
C20 |
H9 |
109.4 |
109.5 |
H8 |
C20 |
H9 |
109.5 |
109.4 |
H10 |
C21 |
H11 |
109.5 |
109.5 |
H10 |
C21 |
H12 |
109.4 |
109.5 |
H11 |
C21 |
H12 |
109.5 |
109.4 |
H13 |
C22 |
H14 |
109.5 |
109.5 |
H13 |
C22 |
H15 |
109.5 |
109.5 |
H14 |
C22 |
H15 |
109.5 |
109.4 |
H16 |
C18 |
H17 |
109.5 |
109.7 |
H18 |
C16 |
H19 |
109.4 |
109.6 |
H21 |
C2 |
H22 |
109.5 |
109.4 |
H23 |
C1 |
H24 |
109.5 |
109.4 |
H25 |
C |
H26 |
109.4 |
109.5 |
H25 |
C |
H27 |
109.5 |
109.5 |
H26 |
C |
H27 |
109.4 |
109.4 |
Torsion Angles for 40X
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C21 |
C17 |
C20 |
C16 |
119.5 |
119.4 |
C21 |
C17 |
C20 |
C18 |
239.4 |
240.7 |
C18 |
C17 |
C20 |
C16 |
240.0 |
238.7 |
C20 |
C17 |
C16 |
H18 |
43.0 |
172.7 |
C20 |
C17 |
C16 |
H19 |
161.6 |
52.5 |
C20 |
C17 |
C18 |
C19 |
71.3 |
55.7 |
C20 |
C17 |
C18 |
H16 |
192.3 |
175.3 |
C20 |
C17 |
C18 |
H17 |
310.4 |
295.9 |
O1 |
C15 |
C12 |
C11 |
221.3 |
0.0 |
O1 |
C15 |
N1 |
H1 |
360.0 |
180.0 |
O1 |
C15 |
N1 |
H2 |
180.0 |
359.6 |
C20 |
C17 |
C21 |
C16 |
240.1 |
240.6 |
C20 |
C17 |
C21 |
C18 |
120.9 |
119.4 |
C18 |
C17 |
C21 |
C16 |
119.2 |
121.3 |
C21 |
C17 |
C16 |
H18 |
283.5 |
53.3 |
C21 |
C17 |
C16 |
H19 |
42.2 |
293.2 |
C21 |
C17 |
C18 |
C19 |
191.5 |
175.0 |
C21 |
C17 |
C18 |
H16 |
312.5 |
294.6 |
C21 |
C17 |
C18 |
H17 |
70.5 |
55.2 |
C |
C1 |
C2 |
H21 |
306.6 |
60.0 |
C |
C1 |
C2 |
H22 |
187.6 |
300.0 |
H23 |
C1 |
C |
H24 |
241.2 |
120.0 |
C20 |
C17 |
C16 |
C18 |
239.2 |
239.6 |
C21 |
C17 |
C16 |
C18 |
119.8 |
120.3 |
C16 |
C17 |
C18 |
C19 |
310.8 |
295.3 |
C16 |
C17 |
C18 |
H16 |
71.8 |
55.0 |
C16 |
C17 |
C18 |
H17 |
189.9 |
175.6 |
C17 |
C16 |
C8 |
N |
157.3 |
159.0 |
H18 |
C16 |
C17 |
H19 |
241.3 |
120.1 |
C20 |
C17 |
C18 |
C16 |
120.5 |
120.3 |
C21 |
C17 |
C18 |
C16 |
240.7 |
239.7 |
C18 |
C17 |
C16 |
H18 |
163.8 |
293.0 |
C18 |
C17 |
C16 |
H19 |
282.5 |
172.9 |
H16 |
C18 |
C17 |
H17 |
241.9 |
239.4 |
O |
C14 |
C13 |
H6 |
352.9 |
354.9 |
C2 |
C3 |
O |
H20 |
106.7 |
119.9 |
O |
C3 |
C2 |
H21 |
351.1 |
55.1 |
O |
C3 |
C2 |
H22 |
110.1 |
175.0 |
O |
C3 |
C4 |
H3 |
149.6 |
282.2 |
O |
C3 |
C4 |
H4 |
269.2 |
162.2 |
C14 |
C13 |
C12 |
C15 |
184.2 |
180.1 |
C14 |
C13 |
C12 |
C11 |
2.2 |
0.1 |
C12 |
C13 |
C14 |
H6 |
180.0 |
179.9 |
C12 |
C13 |
C14 |
C9 |
357.5 |
358.2 |
C14 |
C13 |
C12 |
H6 |
180.0 |
180.1 |
C15 |
C12 |
C13 |
C11 |
182.0 |
180.0 |
C13 |
C12 |
C11 |
CL |
184.7 |
180.9 |
C13 |
C12 |
C15 |
C11 |
177.9 |
180.0 |
C15 |
C12 |
C13 |
H6 |
4.3 |
0.0 |
C12 |
C15 |
N1 |
H1 |
178.7 |
0.1 |
C12 |
C15 |
N1 |
H2 |
358.8 |
179.7 |
C15 |
C12 |
C11 |
CL |
2.6 |
0.9 |
H1 |
N1 |
C15 |
H2 |
180.0 |
180.4 |
C9 |
C14 |
C13 |
C12 |
357.5 |
358.2 |
C9 |
C14 |
C13 |
H6 |
177.5 |
178.3 |
C14 |
C9 |
C10 |
H5 |
183.0 |
178.4 |
C19 |
C18 |
C17 |
C16 |
310.8 |
295.3 |
C17 |
C18 |
C19 |
H16 |
121.0 |
119.7 |
C17 |
C18 |
C19 |
H17 |
239.1 |
240.2 |
C13 |
C12 |
C11 |
C15 |
182.2 |
180.0 |
C11 |
C12 |
C13 |
H6 |
182.3 |
180.1 |
C12 |
C11 |
C10 |
H5 |
176.8 |
179.9 |
O |
C3 |
C2 |
H20 |
253.1 |
240.1 |
C2 |
C3 |
C4 |
H3 |
291.5 |
42.3 |
C2 |
C3 |
C4 |
H4 |
51.1 |
282.3 |
C1 |
C2 |
C3 |
H21 |
239.5 |
240.0 |
C1 |
C2 |
C3 |
H22 |
120.5 |
120.0 |
H21 |
C2 |
C3 |
H22 |
241.0 |
240.0 |
C5 |
C4 |
C3 |
H3 |
239.8 |
120.0 |
C5 |
C4 |
C3 |
H4 |
120.2 |
240.0 |
H3 |
C4 |
C3 |
H4 |
240.4 |
120.0 |
C17 |
C18 |
C19 |
O2 |
211.2 |
222.3 |
C8 |
C7 |
C6 |
C22 |
184.4 |
180.1 |
C1 |
C2 |
C3 |
H20 |
337.5 |
54.9 |
C3 |
C2 |
C1 |
H21 |
120.5 |
120.0 |
C3 |
C2 |
C1 |
H22 |
239.5 |
240.0 |
H21 |
C2 |
C1 |
H22 |
119.0 |
119.9 |
C13 |
C14 |
C9 |
N |
176.2 |
183.1 |
N |
C9 |
C10 |
H5 |
6.6 |
357.9 |
C11 |
C10 |
C9 |
H5 |
180.0 |
180.0 |
C7 |
C6 |
C22 |
H13 |
88.2 |
270.0 |
C7 |
C6 |
C22 |
H14 |
208.2 |
30.0 |
C7 |
C6 |
C22 |
H15 |
328.1 |
149.9 |
N |
C5 |
C4 |
H3 |
181.7 |
50.6 |
N |
C5 |
C4 |
H4 |
62.0 |
170.6 |
C9 |
C10 |
C11 |
H5 |
180.0 |
180.0 |
CL |
C11 |
C10 |
H5 |
352.9 |
359.9 |
C6 |
C5 |
C4 |
H3 |
357.4 |
230.6 |
C6 |
C5 |
C4 |
H4 |
237.8 |
350.6 |
H13 |
C22 |
C6 |
H14 |
240.0 |
240.0 |
H13 |
C22 |
C6 |
H15 |
120.0 |
120.0 |
H14 |
C22 |
C6 |
H15 |
240.0 |
240.0 |
C3 |
C4 |
C5 |
H3 |
120.2 |
240.0 |
C3 |
C4 |
C5 |
H4 |
239.8 |
120.0 |
H3 |
C4 |
C5 |
H4 |
119.7 |
240.0 |
C15 |
N1 |
H1 |
H2 |
180.0 |
179.6 |
C15 |
N1 |
H2 |
H1 |
180.0 |
180.4 |
C3 |
C4 |
H3 |
H4 |
119.4 |
240.0 |
C5 |
C4 |
H3 |
H4 |
240.5 |
120.0 |
C3 |
C4 |
H4 |
H3 |
240.5 |
120.0 |
C5 |
C4 |
H4 |
H3 |
119.5 |
240.0 |
C14 |
C13 |
H6 |
C12 |
180.0 |
179.9 |
H6 |
C13 |
C14 |
C9 |
177.5 |
178.3 |
H6 |
C13 |
C12 |
C15 |
4.3 |
0.0 |
H6 |
C13 |
C12 |
C11 |
182.3 |
180.1 |
H7 |
C20 |
C17 |
C16 |
60.5 |
60.0 |
H7 |
C20 |
C17 |
C18 |
300.6 |
298.7 |
H8 |
C20 |
H7 |
H9 |
120.0 |
119.9 |
H8 |
C20 |
C17 |
C16 |
180.5 |
180.0 |
H8 |
C20 |
C17 |
C18 |
60.6 |
58.7 |
H7 |
C20 |
H8 |
H9 |
240.1 |
240.1 |
H9 |
C20 |
C17 |
C16 |
300.6 |
300.0 |
H9 |
C20 |
C17 |
C18 |
180.6 |
178.7 |
H7 |
C20 |
H9 |
H8 |
120.0 |
119.9 |
H10 |
C21 |
C17 |
C16 |
299.9 |
60.0 |
H10 |
C21 |
C17 |
C18 |
59.1 |
181.3 |
H11 |
C21 |
H10 |
H12 |
120.0 |
119.9 |
H11 |
C21 |
C17 |
C16 |
59.9 |
180.0 |
H11 |
C21 |
C17 |
C18 |
179.1 |
301.3 |
H10 |
C21 |
H11 |
H12 |
240.0 |
240.0 |
H12 |
C21 |
C17 |
C16 |
179.9 |
299.9 |
H12 |
C21 |
C17 |
C18 |
299.1 |
61.2 |
H10 |
C21 |
H12 |
H11 |
120.0 |
120.0 |
C6 |
C22 |
H13 |
H14 |
120.0 |
120.0 |
C6 |
C22 |
H13 |
H15 |
240.0 |
240.0 |
H14 |
C22 |
H13 |
H15 |
120.0 |
119.9 |
C6 |
C22 |
H14 |
H13 |
240.0 |
240.0 |
C6 |
C22 |
H14 |
H15 |
120.0 |
120.0 |
H13 |
C22 |
H14 |
H15 |
240.0 |
240.0 |
C6 |
C22 |
H15 |
H13 |
120.0 |
120.0 |
C6 |
C22 |
H15 |
H14 |
240.0 |
240.0 |
H13 |
C22 |
H15 |
H14 |
120.0 |
120.0 |
H16 |
C18 |
C17 |
C16 |
71.8 |
55.0 |
C17 |
C18 |
H16 |
C19 |
234.0 |
241.1 |
C17 |
C18 |
H16 |
H17 |
117.0 |
120.6 |
H17 |
C18 |
C17 |
C16 |
189.9 |
175.6 |
C17 |
C18 |
H17 |
C19 |
126.0 |
118.9 |
C17 |
C18 |
H17 |
H16 |
243.0 |
239.4 |
C17 |
C16 |
H18 |
H19 |
118.0 |
239.9 |
H18 |
C16 |
C8 |
N |
36.6 |
278.9 |
C17 |
C16 |
H19 |
H18 |
242.0 |
120.1 |
H19 |
C16 |
C8 |
N |
278.0 |
39.1 |
O |
C3 |
H20 |
C2 |
115.2 |
119.9 |
H20 |
C3 |
C2 |
H21 |
98.0 |
174.9 |
H20 |
C3 |
C2 |
H22 |
217.0 |
294.9 |
H20 |
C3 |
C4 |
H3 |
39.8 |
162.2 |
H20 |
C3 |
C4 |
H4 |
159.5 |
42.2 |
H21 |
C2 |
C3 |
H20 |
98.0 |
174.9 |
C3 |
C2 |
H21 |
H22 |
118.4 |
120.0 |
C1 |
C2 |
H21 |
H22 |
241.6 |
240.1 |
H22 |
C2 |
C3 |
H20 |
217.0 |
294.9 |
C3 |
C2 |
H22 |
H21 |
241.6 |
240.0 |
C1 |
C2 |
H22 |
H21 |
118.4 |
120.0 |
C |
C1 |
H23 |
H24 |
118.2 |
240.0 |
H23 |
C1 |
C2 |
H21 |
186.0 |
180.0 |
H23 |
C1 |
C2 |
H22 |
67.0 |
60.0 |
C |
C1 |
H24 |
H23 |
241.8 |
120.0 |
H24 |
C1 |
C2 |
H21 |
67.2 |
299.9 |
H24 |
C1 |
C2 |
H22 |
308.2 |
180.0 |
H25 |
C |
C1 |
H23 |
300.6 |
180.0 |
H25 |
C |
C1 |
H24 |
59.4 |
60.0 |
H26 |
C |
H25 |
H27 |
120.0 |
119.9 |
H26 |
C |
C1 |
H23 |
60.6 |
300.1 |
H26 |
C |
C1 |
H24 |
179.4 |
180.1 |
H25 |
C |
H26 |
H27 |
240.0 |
240.0 |
H27 |
C |
C1 |
H23 |
180.6 |
60.0 |
H27 |
C |
C1 |
H24 |
299.4 |
300.0 |
H25 |
C |
H27 |
H26 |
119.9 |
120.0 |