Atom Nomenclature for 40L

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 40L

Atom Name (V3) Atom Name (V2)
C13 C1
C15 C2
C17 C3
C20 C4
C21 C5
C24 C6
C01 C7
C02 C8
C03 C9
C04 C10
C05 C11
C06 C12
F07 F1
N08 N1
C09 C13
O10 O1
N11 N2
C12 C14
C14 C15
C16 C16
C18 C17
C19 C18
N22 N3
C23 C19
C25 C20
N26 N4
C27 C21
N28 N5
N29 N6
C30 C22
N31 N7
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18