PDB Chemical Component 404
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 404
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2 |
C1 |
1.481 |
1.402 |
| C1 |
N13 |
1.353 |
1.384 |
| C1 |
N6 |
1.346 |
1.327 |
| N7 |
C2 |
1.350 |
1.371 |
| C2 |
C3 |
1.469 |
1.405 |
| C9 |
C3 |
1.490 |
1.411 |
| C3 |
N4 |
1.371 |
1.341 |
| N4 |
C5 |
1.375 |
1.320 |
| C5 |
N6 |
1.369 |
1.328 |
| C5 |
N21 |
1.359 |
1.386 |
| N8 |
N7 |
1.409 |
1.401 |
| N8 |
C9 |
1.344 |
1.304 |
| C10 |
C9 |
1.491 |
1.507 |
| C11 |
C10 |
1.533 |
1.529 |
| C10 |
C12 |
1.530 |
1.530 |
| C10 |
H10 |
1.100 |
1.090 |
| C11 |
H11 |
1.100 |
1.090 |
| C11 |
H11A |
1.100 |
1.090 |
| C11 |
H11B |
1.100 |
1.090 |
| C12 |
H12 |
1.100 |
1.090 |
| C12 |
H12A |
1.100 |
1.090 |
| C12 |
H12B |
1.100 |
1.090 |
| N13 |
C14 |
1.456 |
1.465 |
| N13 |
HN13 |
0.999 |
0.970 |
| C14 |
C15 |
1.514 |
1.507 |
| C14 |
H14 |
1.100 |
1.090 |
| C14 |
H14A |
1.100 |
1.090 |
| C20 |
C15 |
1.391 |
1.383 |
| C15 |
C16 |
1.389 |
1.383 |
| C16 |
C17 |
1.388 |
1.382 |
| C16 |
H16 |
1.080 |
1.080 |
| C18 |
C17 |
1.389 |
1.382 |
| C17 |
H17 |
1.080 |
1.080 |
| C19 |
C18 |
1.388 |
1.383 |
| C18 |
H18 |
1.081 |
1.080 |
| C20 |
C19 |
1.387 |
1.382 |
| C19 |
H19 |
1.080 |
1.080 |
| C20 |
H20 |
1.080 |
1.079 |
| N21 |
C22 |
1.453 |
1.465 |
| N21 |
HN21 |
1.000 |
0.970 |
| C25 |
C22 |
1.524 |
1.530 |
| C22 |
C23 |
1.525 |
1.530 |
| C22 |
H22 |
1.100 |
1.090 |
| C23 |
C24 |
1.511 |
1.530 |
| C23 |
H23 |
1.100 |
1.090 |
| C23 |
H23A |
1.100 |
1.090 |
| C24 |
H24 |
1.100 |
1.089 |
| C24 |
H24A |
1.100 |
1.089 |
| C24 |
H24B |
1.100 |
1.091 |
| O26 |
C25 |
1.432 |
1.429 |
| C25 |
H25 |
1.100 |
1.090 |
| C25 |
H25A |
1.100 |
1.090 |
| O26 |
HO26 |
0.950 |
0.968 |
| N7 |
HN7 |
1.000 |
0.969 |
Bond Angles for 404
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
N13 |
121.4 |
120.7 |
| C2 |
C1 |
N6 |
116.9 |
118.7 |
| N6 |
C1 |
N13 |
121.7 |
120.7 |
| C1 |
N13 |
C14 |
120.8 |
120.0 |
| C1 |
N13 |
HN13 |
105.9 |
120.0 |
| C1 |
N6 |
C5 |
123.8 |
121.2 |
| C2 |
C3 |
N4 |
121.5 |
118.8 |
| C3 |
N4 |
C5 |
118.0 |
120.5 |
| N4 |
C5 |
N6 |
122.7 |
122.4 |
| N4 |
C5 |
N21 |
122.4 |
118.8 |
| N6 |
C5 |
N21 |
114.9 |
118.8 |
| C5 |
N21 |
C22 |
125.4 |
120.0 |
| C5 |
N21 |
HN21 |
104.5 |
120.0 |
| N8 |
N7 |
HN7 |
124.9 |
126.0 |
| C11 |
C10 |
C12 |
111.4 |
109.5 |
| C11 |
C10 |
H10 |
108.0 |
109.5 |
| C12 |
C10 |
H10 |
107.0 |
109.5 |
| C10 |
C12 |
H12 |
109.5 |
109.5 |
| C10 |
C12 |
H12A |
109.5 |
109.5 |
| C10 |
C12 |
H12B |
109.4 |
109.5 |
| H11 |
C11 |
H11A |
109.5 |
109.5 |
| H11 |
C11 |
H11B |
109.5 |
109.4 |
| H11A |
C11 |
H11B |
109.5 |
109.5 |
| H12 |
C12 |
H12A |
109.5 |
109.5 |
| H12 |
C12 |
H12B |
109.5 |
109.5 |
| H12A |
C12 |
H12B |
109.5 |
109.4 |
| C14 |
N13 |
HN13 |
105.9 |
120.0 |
| N13 |
C14 |
C15 |
110.4 |
109.5 |
| N13 |
C14 |
H14 |
109.1 |
109.4 |
| N13 |
C14 |
H14A |
109.2 |
109.5 |
| C15 |
C14 |
H14 |
109.2 |
109.5 |
| C15 |
C14 |
H14A |
109.1 |
109.5 |
| C14 |
C15 |
C16 |
119.7 |
120.0 |
| H14 |
C14 |
H14A |
109.8 |
109.5 |
| C15 |
C16 |
C17 |
120.1 |
120.0 |
| C15 |
C16 |
H16 |
120.0 |
120.0 |
| C17 |
C16 |
H16 |
119.9 |
120.0 |
| C16 |
C17 |
H17 |
120.1 |
120.0 |
| C18 |
C17 |
H17 |
120.1 |
120.0 |
| C19 |
C18 |
H18 |
119.8 |
120.0 |
| C20 |
C19 |
H19 |
120.2 |
120.0 |
| C22 |
N21 |
HN21 |
104.5 |
120.1 |
| N21 |
C22 |
C23 |
109.7 |
109.5 |
| N21 |
C22 |
H22 |
107.5 |
109.5 |
| C25 |
C22 |
H22 |
107.6 |
109.4 |
| C23 |
C22 |
H22 |
110.2 |
109.5 |
| C22 |
C23 |
C24 |
110.4 |
109.5 |
| C22 |
C23 |
H23 |
109.2 |
109.5 |
| C22 |
C23 |
H23A |
109.2 |
109.4 |
| C24 |
C23 |
H23 |
109.1 |
109.5 |
| C24 |
C23 |
H23A |
109.2 |
109.5 |
| C23 |
C24 |
H24 |
109.5 |
109.4 |
| C23 |
C24 |
H24A |
109.5 |
109.5 |
| C23 |
C24 |
H24B |
109.5 |
109.4 |
| H23 |
C23 |
H23A |
109.8 |
109.4 |
| H24 |
C24 |
H24A |
109.4 |
109.5 |
| H24 |
C24 |
H24B |
109.5 |
109.5 |
| H24A |
C24 |
H24B |
109.5 |
109.5 |
| O26 |
C25 |
H25 |
110.0 |
109.5 |
| O26 |
C25 |
H25A |
110.0 |
109.5 |
| H25 |
C25 |
H25A |
108.9 |
109.4 |
Torsion Angles for 404
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N6 |
C1 |
C2 |
N13 |
180.6 |
180.3 |
| C2 |
C1 |
N13 |
C14 |
170.6 |
180.3 |
| C2 |
C1 |
N13 |
HN13 |
290.6 |
0.2 |
| C2 |
C1 |
N6 |
C5 |
359.1 |
359.4 |
| C2 |
C1 |
N13 |
N6 |
180.6 |
180.3 |
| N13 |
C1 |
N6 |
C5 |
179.7 |
179.7 |
| C14 |
N13 |
C1 |
HN13 |
240.0 |
180.1 |
| C1 |
N13 |
C14 |
C15 |
106.6 |
180.0 |
| C1 |
N13 |
C14 |
H14 |
226.6 |
300.0 |
| C1 |
N13 |
C14 |
H14A |
346.6 |
59.9 |
| C2 |
C1 |
N6 |
N13 |
179.4 |
179.7 |
| N6 |
C1 |
N13 |
C14 |
350.0 |
0.0 |
| N6 |
C1 |
N13 |
HN13 |
110.0 |
180.0 |
| N4 |
C5 |
N6 |
C1 |
1.4 |
0.6 |
| C1 |
N6 |
C5 |
N21 |
180.2 |
180.3 |
| N7 |
C2 |
C1 |
N13 |
0.1 |
0.0 |
| C3 |
C2 |
C1 |
N13 |
179.4 |
180.0 |
| C3 |
C2 |
C1 |
N6 |
0.0 |
0.2 |
| C2 |
C3 |
N4 |
C5 |
359.9 |
359.9 |
| C3 |
N4 |
C5 |
N6 |
359.2 |
359.8 |
| C3 |
N4 |
C5 |
N21 |
180.5 |
180.0 |
| C1 |
N6 |
C5 |
N4 |
1.4 |
0.6 |
| N6 |
C5 |
N4 |
N21 |
178.7 |
179.8 |
| N4 |
C5 |
N21 |
C22 |
335.1 |
180.0 |
| N4 |
C5 |
N21 |
HN21 |
95.1 |
0.1 |
| C5 |
N6 |
C1 |
N13 |
179.7 |
179.7 |
| N4 |
C5 |
N6 |
N21 |
181.2 |
180.2 |
| N6 |
C5 |
N21 |
C22 |
156.2 |
0.2 |
| N6 |
C5 |
N21 |
HN21 |
276.2 |
180.3 |
| N4 |
C5 |
N21 |
N6 |
178.8 |
179.8 |
| C22 |
N21 |
C5 |
HN21 |
240.0 |
180.0 |
| C5 |
N21 |
C22 |
C23 |
95.8 |
275.0 |
| C5 |
N21 |
C22 |
H22 |
215.6 |
35.1 |
| C9 |
N8 |
N7 |
HN7 |
179.3 |
180.0 |
| C12 |
C10 |
C11 |
H10 |
242.7 |
120.0 |
| C11 |
C10 |
C12 |
H12 |
55.5 |
300.0 |
| C11 |
C10 |
C12 |
H12A |
175.5 |
60.0 |
| C11 |
C10 |
C12 |
H12B |
295.5 |
180.0 |
| C11 |
C10 |
C12 |
H10 |
117.9 |
240.0 |
| H12 |
C12 |
C10 |
H12A |
240.0 |
240.0 |
| H12 |
C12 |
C10 |
H12B |
120.0 |
120.0 |
| H12A |
C12 |
C10 |
H12B |
240.0 |
240.1 |
| C11 |
C10 |
H10 |
C12 |
240.0 |
120.0 |
| H10 |
C10 |
C12 |
H12 |
297.6 |
60.1 |
| H10 |
C10 |
C12 |
H12A |
57.6 |
180.1 |
| H10 |
C10 |
C12 |
H12B |
177.6 |
300.0 |
| H11 |
C11 |
C10 |
C12 |
305.0 |
300.0 |
| H11 |
C11 |
C10 |
H10 |
62.3 |
180.0 |
| H11A |
C11 |
H11 |
H11B |
120.0 |
120.0 |
| H11A |
C11 |
C10 |
C12 |
65.0 |
60.0 |
| H11A |
C11 |
C10 |
H10 |
182.3 |
300.0 |
| H11 |
C11 |
H11A |
H11B |
240.0 |
240.1 |
| H11B |
C11 |
C10 |
C12 |
185.0 |
180.0 |
| H11B |
C11 |
C10 |
H10 |
302.3 |
60.0 |
| H11 |
C11 |
H11B |
H11A |
120.0 |
120.0 |
| H12 |
C12 |
C10 |
H10 |
297.6 |
60.1 |
| C10 |
C12 |
H12 |
H12A |
120.0 |
120.0 |
| C10 |
C12 |
H12 |
H12B |
240.0 |
240.0 |
| H12A |
C12 |
H12 |
H12B |
120.0 |
119.9 |
| H12A |
C12 |
C10 |
H10 |
57.6 |
180.1 |
| C10 |
C12 |
H12A |
H12 |
240.0 |
239.9 |
| C10 |
C12 |
H12A |
H12B |
120.0 |
120.0 |
| H12 |
C12 |
H12A |
H12B |
240.0 |
240.0 |
| H12B |
C12 |
C10 |
H10 |
177.6 |
300.0 |
| C10 |
C12 |
H12B |
H12 |
120.0 |
120.1 |
| C10 |
C12 |
H12B |
H12A |
240.0 |
240.0 |
| H12 |
C12 |
H12B |
H12A |
120.0 |
120.0 |
| C1 |
N13 |
C14 |
HN13 |
120.0 |
179.9 |
| C15 |
C14 |
N13 |
H14 |
240.0 |
240.0 |
| C15 |
C14 |
N13 |
H14A |
120.0 |
120.0 |
| N13 |
C14 |
C15 |
C16 |
241.4 |
90.0 |
| H14 |
C14 |
N13 |
H14A |
240.0 |
240.0 |
| C1 |
N13 |
HN13 |
C14 |
230.7 |
180.1 |
| HN13 |
N13 |
C14 |
C15 |
346.6 |
0.0 |
| HN13 |
N13 |
C14 |
H14 |
106.6 |
120.0 |
| HN13 |
N13 |
C14 |
H14A |
226.6 |
240.0 |
| C15 |
C14 |
N13 |
HN13 |
346.6 |
0.0 |
| N13 |
C14 |
C15 |
H14 |
120.0 |
120.0 |
| N13 |
C14 |
C15 |
H14A |
240.0 |
240.0 |
| H14 |
C14 |
C15 |
H14A |
120.0 |
120.0 |
| C14 |
C15 |
C16 |
C17 |
179.8 |
180.0 |
| C14 |
C15 |
C16 |
H16 |
359.8 |
0.0 |
| H14 |
C14 |
N13 |
HN13 |
106.6 |
120.0 |
| N13 |
C14 |
H14 |
C15 |
239.2 |
240.0 |
| N13 |
C14 |
H14 |
H14A |
119.6 |
120.0 |
| C15 |
C14 |
H14 |
H14A |
240.4 |
240.0 |
| H14 |
C14 |
C15 |
C16 |
121.4 |
330.0 |
| H14A |
C14 |
N13 |
HN13 |
226.6 |
240.0 |
| N13 |
C14 |
H14A |
C15 |
120.8 |
120.0 |
| N13 |
C14 |
H14A |
H14 |
240.4 |
240.0 |
| C15 |
C14 |
H14A |
H14 |
119.6 |
120.0 |
| H14A |
C14 |
C15 |
C16 |
1.4 |
210.0 |
| C20 |
C15 |
C14 |
H14 |
301.0 |
149.7 |
| C20 |
C15 |
C14 |
H14A |
181.0 |
29.7 |
| C20 |
C15 |
C16 |
H16 |
180.3 |
180.3 |
| C16 |
C15 |
C14 |
H14 |
121.4 |
330.0 |
| C16 |
C15 |
C14 |
H14A |
1.4 |
210.0 |
| C17 |
C16 |
C15 |
H16 |
180.0 |
180.0 |
| C15 |
C16 |
C17 |
H17 |
180.0 |
180.0 |
| C15 |
C16 |
C17 |
H16 |
180.0 |
180.0 |
| C18 |
C17 |
C16 |
H17 |
180.0 |
180.0 |
| C15 |
C16 |
H16 |
C17 |
180.0 |
180.0 |
| H16 |
C16 |
C17 |
H17 |
360.0 |
0.0 |
| C18 |
C17 |
C16 |
H16 |
180.0 |
180.0 |
| C16 |
C17 |
C18 |
H17 |
180.0 |
180.0 |
| H17 |
C17 |
C16 |
H16 |
360.0 |
0.0 |
| C19 |
C18 |
C17 |
H17 |
180.0 |
180.0 |
| H18 |
C18 |
C17 |
H17 |
0.0 |
0.0 |
| C20 |
C19 |
C18 |
H18 |
179.8 |
179.7 |
| H19 |
C19 |
C18 |
H18 |
359.8 |
359.9 |
| H20 |
C20 |
C19 |
H19 |
0.5 |
360.0 |
| C5 |
N21 |
C22 |
HN21 |
120.0 |
180.0 |
| C25 |
C22 |
N21 |
H22 |
118.1 |
120.0 |
| C23 |
C22 |
N21 |
H22 |
240.2 |
239.9 |
| N21 |
C22 |
C23 |
C24 |
41.2 |
65.0 |
| N21 |
C22 |
C23 |
H23 |
161.2 |
185.1 |
| N21 |
C22 |
C23 |
H23A |
281.2 |
305.0 |
| C5 |
N21 |
HN21 |
C22 |
226.8 |
180.0 |
| HN21 |
N21 |
C22 |
C23 |
335.8 |
95.0 |
| HN21 |
N21 |
C22 |
H22 |
95.6 |
215.0 |
| C25 |
C22 |
N21 |
HN21 |
213.7 |
335.0 |
| N21 |
C22 |
C25 |
H22 |
242.0 |
240.0 |
| C23 |
C22 |
C25 |
H22 |
119.8 |
120.0 |
| C25 |
C22 |
C23 |
H23 |
284.8 |
305.0 |
| C25 |
C22 |
C23 |
H23A |
44.8 |
65.0 |
| C23 |
C22 |
N21 |
HN21 |
335.8 |
95.0 |
| N21 |
C22 |
C23 |
H22 |
118.2 |
120.1 |
| C25 |
C22 |
C23 |
H22 |
241.8 |
240.1 |
| C24 |
C23 |
C22 |
H23 |
240.0 |
239.9 |
| C24 |
C23 |
C22 |
H23A |
120.0 |
120.0 |
| C22 |
C23 |
C24 |
H24 |
180.0 |
180.0 |
| C22 |
C23 |
C24 |
H24A |
300.0 |
300.1 |
| C22 |
C23 |
C24 |
H24B |
60.0 |
60.0 |
| H23 |
C23 |
C22 |
H23A |
240.0 |
240.1 |
| H22 |
C22 |
N21 |
HN21 |
95.6 |
215.0 |
| N21 |
C22 |
H22 |
C23 |
240.5 |
239.9 |
| H22 |
C22 |
C23 |
C24 |
283.0 |
304.9 |
| H22 |
C22 |
C23 |
H23 |
43.0 |
65.0 |
| H22 |
C22 |
C23 |
H23A |
163.0 |
184.9 |
| C24 |
C23 |
C22 |
H22 |
283.0 |
304.9 |
| C22 |
C23 |
C24 |
H23 |
120.0 |
120.0 |
| C22 |
C23 |
C24 |
H23A |
240.0 |
240.0 |
| H23 |
C23 |
C24 |
H23A |
120.0 |
120.0 |
| H24 |
C24 |
C23 |
H24A |
240.0 |
239.9 |
| H24 |
C24 |
C23 |
H24B |
120.0 |
119.9 |
| H24A |
C24 |
C23 |
H24B |
240.0 |
240.0 |
| H23 |
C23 |
C22 |
H22 |
43.0 |
65.0 |
| C22 |
C23 |
H23 |
C24 |
239.3 |
240.0 |
| C22 |
C23 |
H23 |
H23A |
119.6 |
119.9 |
| C24 |
C23 |
H23 |
H23A |
240.4 |
239.9 |
| H23 |
C23 |
C24 |
H24 |
60.0 |
60.0 |
| H23 |
C23 |
C24 |
H24A |
180.0 |
180.0 |
| H23 |
C23 |
C24 |
H24B |
300.0 |
300.0 |
| H23A |
C23 |
C22 |
H22 |
163.0 |
184.9 |
| C22 |
C23 |
H23A |
C24 |
120.7 |
120.0 |
| C22 |
C23 |
H23A |
H23 |
240.4 |
240.1 |
| C24 |
C23 |
H23A |
H23 |
119.6 |
120.1 |
| H23A |
C23 |
C24 |
H24 |
300.0 |
300.0 |
| H23A |
C23 |
C24 |
H24A |
60.0 |
60.0 |
| H23A |
C23 |
C24 |
H24B |
180.0 |
180.0 |
| H24 |
C24 |
C23 |
H23 |
60.0 |
60.0 |
| H24 |
C24 |
C23 |
H23A |
300.0 |
300.0 |
| C23 |
C24 |
H24 |
H24A |
120.0 |
120.0 |
| C23 |
C24 |
H24 |
H24B |
240.0 |
240.1 |
| H24A |
C24 |
H24 |
H24B |
120.0 |
120.1 |
| H24A |
C24 |
C23 |
H23 |
180.0 |
180.0 |
| H24A |
C24 |
C23 |
H23A |
60.0 |
60.0 |
| C23 |
C24 |
H24A |
H24 |
240.0 |
240.0 |
| C23 |
C24 |
H24A |
H24B |
120.0 |
120.0 |
| H24 |
C24 |
H24A |
H24B |
240.0 |
240.0 |
| H24B |
C24 |
C23 |
H23 |
300.0 |
300.0 |
| H24B |
C24 |
C23 |
H23A |
180.0 |
180.0 |
| C23 |
C24 |
H24B |
H24 |
120.0 |
119.9 |
| C23 |
C24 |
H24B |
H24A |
240.0 |
240.0 |
| H24 |
C24 |
H24B |
H24A |
120.0 |
120.1 |
| O26 |
C25 |
C22 |
H22 |
215.7 |
185.0 |
| H25 |
C25 |
O26 |
H25A |
120.0 |
120.0 |
| H25 |
C25 |
C22 |
H22 |
335.7 |
305.0 |
| O26 |
C25 |
H25 |
H25A |
239.4 |
240.0 |
| H25A |
C25 |
C22 |
H22 |
95.7 |
65.0 |
| O26 |
C25 |
H25A |
H25 |
120.6 |
120.0 |
| HO26 |
O26 |
C25 |
H25 |
60.0 |
60.0 |
| HO26 |
O26 |
C25 |
H25A |
300.0 |
300.0 |