Atom Nomenclature for 3Z9

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 3Z9

Atom Name (V3) Atom Name (V2)
C13 C1
C18 C2
C15 C3
C19 C4
C20 C5
C21 C6
C22 C7
C23 C8
C24 C9
C34 C10
C27 C11
C33 C12
C1 C13
C2 C14
C3 C15
C4 C16
C5 C17
C6 C18
C7 C19
N8 N1
C9 C20
C10 C21
O11 O1
N12 N2
C14 C22
O16 O2
N17 N3
C25 C23
C26 C24
O28 O3
C29 C25
O30 O4
C31 C26
C32 C27
C35 C28
C36 C29
S37 S1
C38 C30
O39 O5
O40 O6
C41 C31
C42 C32
N43 N4
C44 C33
O45 O7
O46 O8
C47 C34
H57 H1
H58 H2
H60 H3
H59 H4
H62 H5
H61 H6
H64 H7
H63 H8
H65 H9
H75 H10
H67 H11
H48 H12
H49 H13
H50 H14
H51 H15
H53 H16
H52 H17
H55 H18
H54 H19
H56 H20
H66 H21
H68 H22
H69 H23
H70 H24
H72 H25
H71 H26
H73 H27
H74 H28
H76 H29
H77 H30
H78 H31
H79 H32
H80 H33
H83 H34
H81 H35
H82 H36
H84 H37
H85 H38
H87 H39
H86 H40