PDB Chemical Component 3YU
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 3YU
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N34 |
C33 |
1.304 |
1.307 |
| N34 |
N35 |
1.357 |
1.285 |
| C33 |
N27 |
1.343 |
1.351 |
| N35 |
N36 |
1.298 |
1.289 |
| N27 |
N36 |
1.357 |
1.406 |
| N27 |
C26 |
1.427 |
1.399 |
| C26 |
C21 |
1.394 |
1.386 |
| C26 |
C25 |
1.410 |
1.405 |
| C21 |
C22 |
1.388 |
1.382 |
| N11 |
C12 |
1.367 |
1.367 |
| N11 |
C3 |
1.352 |
1.351 |
| C6 |
C7 |
1.385 |
1.383 |
| C6 |
C5 |
1.389 |
1.383 |
| C12 |
C13 |
1.362 |
1.359 |
| C7 |
C8 |
1.382 |
1.382 |
| C4 |
C5 |
1.512 |
1.506 |
| C4 |
C2 |
1.541 |
1.529 |
| C25 |
C29 |
1.472 |
1.470 |
| C25 |
C24 |
1.400 |
1.398 |
| C22 |
C23 |
1.380 |
1.386 |
| C29 |
C30 |
1.332 |
1.350 |
| C5 |
C10 |
1.395 |
1.382 |
| C3 |
C2 |
1.502 |
1.507 |
| C3 |
N14 |
1.323 |
1.304 |
| N1 |
C2 |
1.463 |
1.465 |
| N1 |
C31 |
1.349 |
1.348 |
| C13 |
N14 |
1.384 |
1.348 |
| C13 |
C15 |
1.475 |
1.483 |
| C16 |
C15 |
1.395 |
1.387 |
| C16 |
C17 |
1.392 |
1.391 |
| C8 |
C9 |
1.377 |
1.383 |
| N37 |
C17 |
1.356 |
1.372 |
| N37 |
N38 |
1.367 |
1.398 |
| C23 |
C24 |
1.380 |
1.379 |
| C23 |
CL1 |
1.743 |
1.736 |
| C30 |
C31 |
1.482 |
1.462 |
| C15 |
C20 |
1.399 |
1.401 |
| C17 |
C18 |
1.408 |
1.408 |
| C31 |
O32 |
1.232 |
1.217 |
| C10 |
C9 |
1.386 |
1.382 |
| N38 |
C39 |
1.334 |
1.307 |
| C20 |
C19 |
1.383 |
1.362 |
| C18 |
C39 |
1.472 |
1.463 |
| C18 |
C19 |
1.394 |
1.400 |
| C39 |
N40 |
1.347 |
1.398 |
| C16 |
H52 |
1.080 |
1.080 |
| C19 |
H53 |
1.080 |
1.080 |
| C20 |
H54 |
1.080 |
1.080 |
| C21 |
H55 |
1.081 |
1.080 |
| C22 |
H56 |
1.080 |
1.080 |
| C24 |
H57 |
1.080 |
1.080 |
| C12 |
H51 |
1.081 |
1.080 |
| C33 |
H60 |
1.080 |
1.080 |
| N1 |
H41 |
1.000 |
0.970 |
| C2 |
H42 |
1.100 |
1.090 |
| C4 |
H43 |
1.100 |
1.091 |
| C4 |
H44 |
1.099 |
1.090 |
| C6 |
H45 |
1.080 |
1.079 |
| C7 |
H46 |
1.080 |
1.080 |
| C8 |
H47 |
1.080 |
1.080 |
| C9 |
H48 |
1.080 |
1.079 |
| C10 |
H49 |
1.080 |
1.080 |
| N11 |
H50 |
1.000 |
0.970 |
| C29 |
H58 |
1.080 |
1.080 |
| C30 |
H59 |
1.080 |
1.080 |
| N37 |
H61 |
1.000 |
0.970 |
| N40 |
H63 |
1.000 |
0.971 |
| N40 |
H62 |
1.000 |
0.969 |
Bond Angles for 3YU
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N34 |
C33 |
H60 |
124.9 |
126.3 |
| N34 |
N35 |
N36 |
111.0 |
110.2 |
| C33 |
N27 |
N36 |
106.9 |
105.2 |
| C33 |
N27 |
C26 |
132.9 |
127.4 |
| N27 |
C33 |
H60 |
124.9 |
126.4 |
| N27 |
N36 |
N35 |
106.5 |
106.6 |
| C26 |
C21 |
H55 |
119.6 |
119.9 |
| C26 |
C25 |
C29 |
124.0 |
120.2 |
| C21 |
C22 |
C23 |
119.3 |
120.4 |
| C22 |
C21 |
H55 |
119.6 |
120.0 |
| C21 |
C22 |
H56 |
120.4 |
119.8 |
| N11 |
C12 |
H51 |
126.9 |
126.7 |
| C6 |
C7 |
C8 |
120.5 |
120.0 |
| C7 |
C6 |
H45 |
119.7 |
120.0 |
| C6 |
C7 |
H46 |
119.8 |
119.9 |
| C6 |
C5 |
C10 |
118.3 |
120.0 |
| C7 |
C8 |
C9 |
119.7 |
120.0 |
| C8 |
C7 |
H46 |
119.8 |
120.0 |
| C7 |
C8 |
H47 |
120.2 |
120.0 |
| C4 |
C5 |
C10 |
121.4 |
120.0 |
| C5 |
C4 |
H43 |
108.4 |
109.5 |
| C5 |
C4 |
H44 |
108.4 |
109.4 |
| C4 |
C2 |
H42 |
106.1 |
109.5 |
| C25 |
C29 |
C30 |
124.0 |
120.0 |
| C25 |
C29 |
H58 |
118.0 |
120.0 |
| C25 |
C24 |
H57 |
120.0 |
120.1 |
| C22 |
C23 |
C24 |
121.4 |
120.3 |
| C22 |
C23 |
CL1 |
119.5 |
119.8 |
| C23 |
C22 |
H56 |
120.4 |
119.8 |
| C29 |
C30 |
C31 |
129.4 |
120.0 |
| C30 |
C29 |
H58 |
118.0 |
120.0 |
| C29 |
C30 |
H59 |
115.3 |
120.0 |
| C5 |
C10 |
C9 |
121.0 |
120.0 |
| C5 |
C10 |
H49 |
119.5 |
120.0 |
| C3 |
C2 |
H42 |
106.5 |
109.5 |
| C2 |
N1 |
C31 |
119.0 |
120.0 |
| C2 |
N1 |
H41 |
120.5 |
120.0 |
| N1 |
C2 |
H42 |
107.0 |
109.5 |
| N1 |
C31 |
C30 |
116.3 |
120.0 |
| N1 |
C31 |
O32 |
121.5 |
120.0 |
| C31 |
N1 |
H41 |
120.5 |
119.9 |
| C13 |
C15 |
C16 |
120.3 |
119.8 |
| C13 |
C15 |
C20 |
120.1 |
119.8 |
| C16 |
C15 |
C20 |
119.3 |
120.4 |
| C15 |
C16 |
H52 |
120.4 |
120.2 |
| C9 |
C8 |
H47 |
120.1 |
120.0 |
| C8 |
C9 |
H48 |
120.0 |
120.0 |
| N37 |
N38 |
C39 |
108.3 |
110.0 |
| N38 |
N37 |
H61 |
124.1 |
125.4 |
| C24 |
C23 |
CL1 |
119.0 |
119.9 |
| C23 |
C24 |
H57 |
120.1 |
120.0 |
| C30 |
C31 |
O32 |
122.1 |
120.0 |
| C31 |
C30 |
H59 |
115.3 |
120.0 |
| C15 |
C20 |
C19 |
121.4 |
120.5 |
| C15 |
C20 |
H54 |
119.3 |
119.7 |
| C17 |
C18 |
C39 |
105.3 |
106.3 |
| C17 |
C18 |
C19 |
118.4 |
120.0 |
| C10 |
C9 |
H48 |
120.0 |
120.0 |
| C18 |
C39 |
N38 |
107.8 |
107.7 |
| N38 |
C39 |
N40 |
122.1 |
126.1 |
| C20 |
C19 |
H53 |
119.9 |
120.0 |
| C19 |
C18 |
C39 |
136.3 |
133.7 |
| C18 |
C39 |
N40 |
130.0 |
126.2 |
| C18 |
C19 |
H53 |
120.0 |
120.0 |
| C39 |
N40 |
H63 |
109.5 |
119.9 |
| C39 |
N40 |
H62 |
109.5 |
120.1 |
| H43 |
C4 |
H44 |
109.5 |
109.5 |
| H63 |
N40 |
H62 |
109.5 |
120.0 |
Torsion Angles for 3YU
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N34 |
C33 |
N27 |
N36 |
2.0 |
0.3 |
| N27 |
C33 |
N34 |
H60 |
180.0 |
179.8 |
| N35 |
N34 |
C33 |
H60 |
178.6 |
180.2 |
| N27 |
N36 |
N35 |
N34 |
1.0 |
0.5 |
| N34 |
C33 |
N27 |
H60 |
180.0 |
180.2 |
| C33 |
N27 |
N36 |
N35 |
358.2 |
359.6 |
| N34 |
N35 |
N36 |
N27 |
1.0 |
0.5 |
| C33 |
N27 |
N36 |
C26 |
174.4 |
180.1 |
| N36 |
N27 |
C33 |
H60 |
182.0 |
180.0 |
| C33 |
N27 |
C26 |
N36 |
187.4 |
179.9 |
| C26 |
N27 |
C33 |
H60 |
355.3 |
0.1 |
| N27 |
C26 |
C21 |
H55 |
352.3 |
0.3 |
| N27 |
C26 |
C25 |
C29 |
9.0 |
359.7 |
| C22 |
C21 |
C26 |
H55 |
180.0 |
179.7 |
| C26 |
C21 |
C22 |
H56 |
177.7 |
180.2 |
| C33 |
N27 |
C26 |
C25 |
131.8 |
228.4 |
| C25 |
C26 |
C21 |
H55 |
182.3 |
179.8 |
| C26 |
C25 |
C29 |
C30 |
120.0 |
164.9 |
| C26 |
C25 |
C29 |
H58 |
299.9 |
345.0 |
| C26 |
C25 |
C24 |
H57 |
179.8 |
179.7 |
| C26 |
C21 |
C22 |
H55 |
180.0 |
180.3 |
| C21 |
C22 |
C23 |
C24 |
1.0 |
0.0 |
| C21 |
C22 |
C23 |
CL1 |
182.4 |
180.0 |
| C23 |
C22 |
C21 |
H56 |
180.0 |
180.0 |
| C3 |
N11 |
C12 |
H51 |
181.1 |
180.0 |
| N11 |
C3 |
C2 |
H42 |
177.6 |
245.0 |
| C7 |
C6 |
C5 |
C10 |
359.7 |
0.2 |
| C6 |
C7 |
C8 |
C9 |
359.5 |
360.0 |
| C8 |
C7 |
C6 |
H46 |
180.0 |
180.0 |
| C6 |
C7 |
C8 |
H47 |
179.5 |
179.9 |
| C4 |
C5 |
C6 |
C10 |
180.6 |
179.7 |
| C6 |
C5 |
C4 |
H43 |
337.5 |
150.3 |
| C6 |
C5 |
C4 |
H44 |
96.3 |
30.3 |
| C6 |
C5 |
C10 |
C9 |
0.1 |
359.6 |
| C6 |
C5 |
C10 |
H49 |
180.0 |
179.7 |
| C8 |
C7 |
C6 |
H45 |
180.6 |
180.0 |
| C6 |
C7 |
C8 |
H46 |
180.0 |
180.0 |
| C9 |
C8 |
C7 |
H47 |
180.0 |
180.0 |
| C7 |
C8 |
C9 |
H48 |
180.3 |
180.0 |
| C6 |
C5 |
C4 |
C10 |
179.3 |
180.3 |
| C5 |
C4 |
C2 |
H42 |
304.9 |
55.0 |
| C4 |
C5 |
C10 |
C9 |
179.4 |
179.8 |
| C4 |
C5 |
C10 |
H49 |
359.4 |
360.0 |
| H43 |
C4 |
C5 |
H44 |
241.2 |
120.0 |
| C3 |
C2 |
C4 |
H42 |
115.6 |
120.0 |
| C4 |
C2 |
N1 |
C31 |
157.8 |
84.9 |
| C4 |
C2 |
N1 |
H41 |
337.8 |
265.0 |
| N1 |
C2 |
C4 |
H42 |
243.9 |
240.0 |
| C29 |
C25 |
C24 |
H57 |
359.9 |
359.9 |
| C25 |
C29 |
C30 |
C31 |
179.1 |
180.0 |
| C30 |
C29 |
C25 |
H58 |
180.0 |
179.9 |
| C25 |
C29 |
C30 |
H59 |
359.1 |
0.1 |
| C25 |
C24 |
C23 |
CL1 |
178.9 |
180.0 |
| C23 |
C24 |
C25 |
H57 |
180.0 |
180.1 |
| C23 |
C22 |
C21 |
H55 |
177.7 |
180.0 |
| C21 |
C22 |
C23 |
H56 |
180.0 |
180.0 |
| C24 |
C23 |
C22 |
CL1 |
178.6 |
180.1 |
| C22 |
C23 |
C24 |
H57 |
180.2 |
180.0 |
| C25 |
C29 |
C30 |
H58 |
180.0 |
180.1 |
| N1 |
C31 |
C30 |
C29 |
353.4 |
180.1 |
| C29 |
C30 |
C31 |
O32 |
170.1 |
0.0 |
| C31 |
C30 |
C29 |
H59 |
180.0 |
179.9 |
| C10 |
C5 |
C4 |
H43 |
158.2 |
330.0 |
| C10 |
C5 |
C4 |
H44 |
276.9 |
210.0 |
| C5 |
C10 |
C9 |
H48 |
179.9 |
180.2 |
| C4 |
C2 |
C3 |
H42 |
244.7 |
240.0 |
| C3 |
C2 |
N1 |
C31 |
284.9 |
205.0 |
| C3 |
C2 |
N1 |
H41 |
105.0 |
25.0 |
| N1 |
C2 |
C3 |
H42 |
117.6 |
119.9 |
| C4 |
C2 |
N1 |
H42 |
115.6 |
120.0 |
| C3 |
C2 |
N1 |
H42 |
242.7 |
240.1 |
| C2 |
N1 |
C31 |
C30 |
182.3 |
180.0 |
| C2 |
N1 |
C31 |
O32 |
5.5 |
0.1 |
| C31 |
N1 |
C2 |
H41 |
180.0 |
179.9 |
| C29 |
C30 |
C31 |
N1 |
353.4 |
180.1 |
| C2 |
N1 |
C31 |
H41 |
180.0 |
180.1 |
| C31 |
N1 |
C2 |
H42 |
42.2 |
324.9 |
| C30 |
C31 |
N1 |
O32 |
176.8 |
179.9 |
| N1 |
C31 |
C30 |
H59 |
173.4 |
360.0 |
| C16 |
C15 |
C13 |
C20 |
173.0 |
180.1 |
| C13 |
C15 |
C16 |
H52 |
8.1 |
359.9 |
| C13 |
C15 |
C20 |
C19 |
171.2 |
179.8 |
| C13 |
C15 |
C20 |
H54 |
351.2 |
0.0 |
| C13 |
C15 |
C16 |
C20 |
186.9 |
179.9 |
| C16 |
C15 |
C20 |
C19 |
358.1 |
359.7 |
| C16 |
C15 |
C20 |
H54 |
178.1 |
180.0 |
| C13 |
C15 |
C16 |
C17 |
188.1 |
179.9 |
| C16 |
C17 |
C18 |
C39 |
177.5 |
180.0 |
| C16 |
C17 |
C18 |
C19 |
356.9 |
0.2 |
| C9 |
C8 |
C7 |
H46 |
179.5 |
180.0 |
| C7 |
C8 |
C9 |
H47 |
180.0 |
180.0 |
| C5 |
C10 |
C9 |
C8 |
359.9 |
0.4 |
| C10 |
C9 |
C8 |
H48 |
180.0 |
179.8 |
| N37 |
C17 |
C18 |
C39 |
358.2 |
360.0 |
| C18 |
C39 |
N38 |
N37 |
359.4 |
360.0 |
| N37 |
N38 |
C39 |
N40 |
178.6 |
179.8 |
| C25 |
C24 |
C23 |
H57 |
180.0 |
179.9 |
| C22 |
C23 |
C24 |
CL1 |
181.4 |
179.9 |
| C24 |
C23 |
C22 |
H56 |
181.0 |
180.1 |
| C22 |
C23 |
CL1 |
C24 |
178.7 |
180.1 |
| CL1 |
C23 |
C22 |
H56 |
2.4 |
360.0 |
| CL1 |
C23 |
C24 |
H57 |
358.8 |
0.1 |
| C31 |
C30 |
C29 |
H58 |
359.1 |
359.9 |
| C29 |
C30 |
C31 |
H59 |
180.0 |
180.1 |
| N1 |
C31 |
C30 |
O32 |
183.2 |
180.1 |
| C30 |
C31 |
N1 |
H41 |
2.3 |
360.0 |
| C13 |
C15 |
C20 |
C16 |
173.1 |
180.1 |
| C20 |
C15 |
C16 |
H52 |
181.2 |
180.0 |
| C15 |
C20 |
C19 |
H53 |
180.2 |
180.3 |
| C17 |
C18 |
C39 |
N38 |
1.5 |
0.0 |
| C19 |
C18 |
C17 |
C39 |
179.4 |
180.3 |
| C17 |
C18 |
C39 |
N40 |
182.4 |
180.2 |
| C17 |
C18 |
C19 |
H53 |
182.3 |
179.7 |
| N1 |
C31 |
O32 |
C30 |
176.6 |
179.9 |
| O32 |
C31 |
N1 |
H41 |
185.5 |
180.0 |
| O32 |
C31 |
C30 |
H59 |
350.1 |
179.9 |
| C5 |
C10 |
C9 |
H49 |
180.0 |
180.1 |
| C10 |
C9 |
C8 |
H47 |
180.3 |
179.9 |
| C8 |
C9 |
C10 |
H48 |
180.0 |
180.2 |
| C39 |
N38 |
N37 |
H61 |
179.5 |
180.1 |
| C19 |
C18 |
C39 |
N38 |
182.3 |
179.7 |
| C18 |
C39 |
N38 |
N40 |
180.8 |
180.2 |
| N38 |
C39 |
N40 |
H63 |
0.0 |
180.3 |
| N38 |
C39 |
N40 |
H62 |
120.0 |
0.2 |
| C15 |
C20 |
C19 |
H54 |
180.0 |
180.3 |
| C20 |
C19 |
C18 |
C39 |
181.5 |
179.9 |
| C18 |
C19 |
C20 |
H53 |
180.0 |
180.2 |
| N37 |
N38 |
C39 |
C18 |
359.4 |
360.0 |
| C17 |
C18 |
C39 |
C19 |
179.3 |
180.3 |
| N38 |
C39 |
C18 |
N40 |
179.2 |
179.8 |
| C39 |
C18 |
C19 |
H53 |
1.5 |
0.1 |
| C18 |
C39 |
N40 |
H63 |
179.1 |
0.1 |
| C18 |
C39 |
N40 |
H62 |
299.1 |
180.0 |
| C15 |
C20 |
C19 |
C18 |
0.2 |
0.5 |
| C17 |
C18 |
C19 |
C39 |
180.8 |
179.6 |
| C20 |
C19 |
C18 |
H53 |
180.0 |
179.8 |
| C19 |
C18 |
C39 |
N40 |
3.1 |
359.9 |
| C18 |
C39 |
N40 |
N38 |
179.1 |
179.8 |
| H63 |
N40 |
C39 |
H62 |
240.0 |
180.1 |
| H52 |
C16 |
C15 |
C20 |
181.2 |
180.0 |
| H53 |
C19 |
C18 |
C39 |
1.5 |
0.1 |
| C15 |
C20 |
H54 |
C19 |
180.0 |
179.7 |
| H54 |
C20 |
C19 |
H53 |
0.2 |
0.0 |
| H55 |
C21 |
C22 |
C23 |
177.7 |
180.0 |
| H55 |
C21 |
C22 |
H56 |
357.7 |
359.9 |
| C21 |
C22 |
H56 |
C23 |
180.0 |
180.0 |
| H56 |
C22 |
C21 |
H55 |
357.7 |
359.9 |
| H56 |
C22 |
C23 |
C24 |
181.0 |
180.1 |
| H56 |
C22 |
C23 |
CL1 |
2.4 |
360.0 |
| H57 |
C24 |
C23 |
CL1 |
358.8 |
0.1 |
| H60 |
C33 |
N27 |
N36 |
182.0 |
180.0 |
| H60 |
C33 |
N27 |
C26 |
355.3 |
0.1 |
| C2 |
N1 |
H41 |
C31 |
180.0 |
179.9 |
| H41 |
N1 |
C2 |
H42 |
222.2 |
145.0 |
| H41 |
N1 |
C31 |
C30 |
2.3 |
360.0 |
| H41 |
N1 |
C31 |
O32 |
185.5 |
180.0 |
| H42 |
C2 |
N1 |
C31 |
42.2 |
324.9 |
| H42 |
C2 |
N1 |
H41 |
222.2 |
145.0 |
| H43 |
C4 |
C5 |
C10 |
158.2 |
330.0 |
| C5 |
C4 |
H43 |
H44 |
118.1 |
240.0 |
| H43 |
C4 |
C2 |
H42 |
184.2 |
175.0 |
| H44 |
C4 |
C5 |
C10 |
276.9 |
210.0 |
| C5 |
C4 |
H44 |
H43 |
241.9 |
120.0 |
| H44 |
C4 |
C2 |
H42 |
65.5 |
295.0 |
| H45 |
C6 |
C7 |
C8 |
180.6 |
180.0 |
| H45 |
C6 |
C7 |
H46 |
0.6 |
360.0 |
| H45 |
C6 |
C5 |
C10 |
179.7 |
180.2 |
| C6 |
C7 |
H46 |
C8 |
180.0 |
180.0 |
| H46 |
C7 |
C6 |
H45 |
0.6 |
360.0 |
| H46 |
C7 |
C8 |
C9 |
179.5 |
180.0 |
| H46 |
C7 |
C8 |
H47 |
359.5 |
360.0 |
| C7 |
C8 |
H47 |
C9 |
180.0 |
180.0 |
| H47 |
C8 |
C7 |
H46 |
359.5 |
360.0 |
| H47 |
C8 |
C9 |
H48 |
0.3 |
0.0 |
| H48 |
C9 |
C8 |
H47 |
0.3 |
0.0 |
| C5 |
C10 |
H49 |
C9 |
180.0 |
179.9 |
| H49 |
C10 |
C9 |
H48 |
360.0 |
0.1 |
| H50 |
N11 |
C12 |
H51 |
1.1 |
0.1 |
| C25 |
C29 |
H58 |
C30 |
180.0 |
179.9 |
| H58 |
C29 |
C30 |
C31 |
359.1 |
359.9 |
| H58 |
C29 |
C30 |
H59 |
179.1 |
180.0 |
| C29 |
C30 |
H59 |
C31 |
180.0 |
179.9 |
| H59 |
C30 |
C29 |
H58 |
179.1 |
180.0 |
| H59 |
C30 |
C31 |
O32 |
350.1 |
179.9 |
| H61 |
N37 |
N38 |
C39 |
179.5 |
180.1 |
| C39 |
N40 |
H63 |
H62 |
120.0 |
179.9 |
| C39 |
N40 |
H62 |
H63 |
240.0 |
180.1 |