PDB Chemical Component 3YS

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 3YS

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C10	C9	1.381	1.381
C10	C11	1.370	1.385
F	C11	1.360	1.352
C9	C8	1.394	1.388
C11	C6	1.390	1.384
O1	C12	1.233	1.216
C8	N2	1.415	1.399
C8	C7	1.393	1.389
C12	N2	1.356	1.348
C12	C13	1.500	1.480
C6	C7	1.396	1.382
C6	C5	1.526	1.507
C4	C5	1.538	1.557
C4	O	1.421	1.437
C17	C13	1.396	1.394
C17	C16	1.386	1.385
C13	N3	1.342	1.328
C5	C2	1.540	1.535
C5	N	1.453	1.443
O	C3	1.462	1.436
C16	C15	1.373	1.389
C2	C3	1.514	1.537
C2	C1	1.526	1.518
N3	C14	1.334	1.314
N	C	1.275	1.276
C15	C14	1.391	1.389
C15	F1	1.362	1.351
C1	S	1.810	1.812
C	S	1.754	1.760
C	N1	1.338	1.375
C7	H1	1.080	1.080
C1	H2	1.100	1.089
C1	H3	1.100	1.090
N1	H4	1.000	0.970
N1	H5	1.000	0.971
C4	H6	1.100	1.090
C4	H7	1.100	1.090
C3	H8	1.100	1.090
C3	H9	1.100	1.090
C2	H10	1.099	1.090
C14	H11	1.080	1.080
C16	H12	1.080	1.080
C17	H13	1.080	1.079
N2	H14	1.000	0.970
C9	H15	1.080	1.081
C10	H16	1.080	1.080

Bond Angles for 3YS

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C10	C9	H15	120.0	120.0
C11	C10	H16	120.7	120.0
O1	C12	N2	125.1	119.9
O1	C12	C13	121.1	120.1
C8	N2	H14	115.4	120.1
C8	C7	H1	119.3	120.1
C12	N2	H14	115.3	119.9
C6	C7	H1	119.2	120.0
C6	C5	C2	110.4	111.0
C6	C5	N	111.7	111.4
C4	C5	C2	96.3	100.5
C4	C5	N	110.1	107.8
C4	O	C3	106.9	109.8
O	C4	H6	110.1	110.3
O	C4	H7	110.0	110.3
C13	C17	H13	120.9	120.5
C17	C16	H12	121.0	120.8
C2	C5	N	116.4	114.5
C5	C2	C3	103.7	103.4
C5	C2	H10	107.9	109.7
C5	N	C	127.1	130.6
O	C3	H8	110.4	109.9
O	C3	H9	110.4	110.0
C2	C3	H8	110.4	110.0
C2	C3	H9	110.3	109.9
C2	C1	S	114.7	109.4
C2	C1	H2	108.2	109.4
C2	C1	H3	108.1	109.5
N3	C14	H11	119.2	119.5
N	C	S	123.7	122.8
C15	C14	H11	119.2	119.6
S	C1	H2	108.2	109.5
S	C1	H3	108.2	109.5
C	N1	H4	120.0	120.0
C	N1	H5	120.0	120.0
H2	C1	H3	109.5	109.5
H4	N1	H5	120.0	120.0
H6	C4	H7	109.5	110.4
H8	C3	H9	109.5	109.9

Torsion Angles for 3YS

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C11	C10	C9	H15	179.6	180.3
F	C11	C10	H16	0.8	0.4
C9	C8	N2	H14	203.4	215.1
C9	C8	C7	H1	178.4	180.0
C11	C6	C7	H1	180.2	180.0
C11	C6	C5	N	168.8	171.2
O1	C12	N2	H14	172.8	175.4
N2	C8	C7	H1	1.2	0.0
C12	N2	C8	H14	180.0	180.1
C6	C7	C8	H1	180.0	179.7
O1	C12	N2	C13	181.2	180.0
C8	N2	C12	H14	180.0	179.9
O1	C12	C13	N2	178.9	180.0
C12	C13	C17	H13	355.1	359.1
C8	C7	C6	H1	180.0	180.3
C5	C6	C7	H1	2.2	0.0
C4	C5	C6	C2	105.5	110.9
C4	C5	C6	N	236.8	239.7
C2	C5	C6	N	131.2	128.8
C6	C5	C2	C3	155.9	152.0
C6	C5	C2	H10	41.3	35.2
C6	C5	N	C	98.8	121.9
C6	C5	C4	C2	245.3	242.5
C6	C5	C4	N	124.2	122.4
C2	C5	C4	N	238.9	239.9
C4	C5	C2	C3	40.7	34.4
C4	C5	C2	H10	286.1	277.6
C4	C5	N	C	222.6	244.1
O	C4	C5	C2	317.3	323.5
O	C4	C5	N	78.4	83.6
C4	O	C3	H8	119.3	238.6
C4	O	C3	H9	240.5	117.4
H6	C4	O	H7	120.7	122.2
O1	C12	C13	C17	1.2	0.0
C13	C17	C16	H12	187.8	179.4
O1	C12	C13	N3	184.3	179.2
C13	N3	C14	H11	182.6	180.0
C6	C5	C2	N	231.3	232.8
C4	C5	C2	N	116.1	115.3
C2	C5	N	C	330.7	355.0
C5	C2	C3	H8	213.3	97.8
C5	C2	C3	H9	92.2	219.0
C5	C2	C1	S	313.1	295.5
C5	C2	C1	H2	73.9	55.5
C5	C2	C1	H3	192.4	175.5
C6	C5	N	C2	128.1	126.9
C4	C5	N	C2	251.8	249.1
N	C5	C2	C3	284.6	279.1
N	C5	C2	H10	170.0	162.4
C5	N	C	S	4.7	359.3
C3	O	C4	H6	268.3	265.7
C3	O	C4	H7	147.6	143.5
C2	C3	O	H8	240.5	119.4
C2	C3	O	H9	119.4	240.6
H8	C3	O	H9	238.9	121.2
C16	C15	C14	H11	177.3	180.3
C4	O	C3	C2	359.9	358.0
C3	C2	C5	N	284.6	279.1
C5	C2	C3	H10	245.7	243.1
O	C3	C2	H8	119.5	240.6
O	C3	C2	H9	240.6	119.5
C3	C2	C1	S	72.5	51.3
C3	C2	C1	H2	193.3	171.3
C3	C2	C1	H3	311.7	291.3
H8	C3	C2	H9	121.1	238.9
C6	C5	C2	C1	281.8	272.7
S	C1	C2	H2	239.2	240.0
S	C1	C2	H3	120.8	120.0
H2	C1	C2	H3	241.6	240.0
C15	C14	N3	H11	180.0	180.0
N	C	N1	H4	0.0	360.0
N	C	N1	H5	180.0	180.0
N3	C14	C15	H11	180.0	180.0
C2	C1	S	H2	120.8	120.0
C2	C1	S	H3	239.2	240.0
N	C	S	C1	358.4	338.6
H2	C1	S	H3	118.5	120.1
C	S	C1	H2	262.3	291.3
C	S	C1	H3	143.9	171.2
S	C	N1	H4	178.5	180.0
S	C	N1	H5	358.5	360.0
H4	N1	C	H5	180.0	180.0
C2	C1	H2	S	235.2	240.1
C2	C1	H2	H3	117.6	120.0
S	C1	H2	H3	242.4	239.9
C2	C1	H3	S	124.8	119.9
C2	C1	H3	H2	242.4	240.0
S	C1	H3	H2	117.6	120.1
C	N1	H4	H5	180.0	180.0
C	N1	H5	H4	180.0	180.0
H6	C4	C5	C2	77.0	82.3
H6	C4	C5	N	198.1	202.4
H6	C4	O	C3	268.3	265.7
O	C4	H6	H7	238.9	237.8
H7	C4	C5	C2	197.7	204.6
H7	C4	C5	N	318.8	324.7
H7	C4	O	C3	147.6	143.5
O	C4	H7	H6	121.1	122.2
O	C3	H8	H9	121.7	238.8
C2	C3	H8	H9	238.4	121.1
O	C3	H9	H8	238.3	121.2
C2	C3	H9	H8	121.6	238.8
H10	C2	C5	N	170.0	162.4
C5	C2	H10	C3	111.6	112.8
H10	C2	C3	H8	327.7	214.8
H10	C2	C3	H9	206.6	335.9
H10	C2	C1	S	193.8	172.9
H10	C2	C1	H2	314.6	292.9
H10	C2	C1	H3	73.0	52.9
H13	C17	C16	H12	7.8	0.3
H16	C10	C9	H15	359.6	359.9