PDB Chemical Component 3YQ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 3YQ

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O2	P1	1.457	1.480
O6	P1	1.509	1.610
P1	O5	1.506	1.610
P1	C6	1.871	1.823
C6	N1	1.403	1.465
C6	P2	1.853	1.823
N1	C1	1.346	1.390
C7	C2	1.443	1.507
O3	P2	1.454	1.480
O4	P2	1.550	1.610
P2	O1	1.461	1.610
C1	C2	1.401	1.390
C1	N2	1.351	1.324
C2	C3	1.384	1.383
N2	C5	1.388	1.320
C3	C4	1.376	1.389
C5	C4	1.371	1.380
O5	H1	0.951	0.967
O6	H2	0.950	0.967
C6	H3	1.100	1.090
O1	H4	0.950	0.966
O4	H5	0.950	0.968
N1	H6	1.000	0.970
C5	H7	1.080	1.080
C4	H8	1.080	1.080
C3	H9	1.080	1.080
C7	H10	1.100	1.089
C7	H11	1.100	1.091
C7	H12	1.099	1.090

Bond Angles for 3YQ

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O2	P1	C6	94.8	109.4
O6	P1	C6	93.4	109.5
P1	O5	H1	109.5	114.0
P1	C6	N1	106.1	109.5
P1	C6	P2	113.5	109.5
P1	C6	H3	107.7	109.5
P2	C6	N1	107.7	109.4
C6	N1	C1	122.5	120.0
N1	C6	H3	114.0	109.4
C6	N1	H6	106.1	120.0
C6	P2	O1	104.9	109.5
P2	C6	H3	107.9	109.5
N1	C1	C2	117.7	119.7
N1	C1	N2	122.0	119.7
C1	N1	H6	106.1	120.0
O3	P2	O1	111.8	109.4
P2	O1	H4	109.5	114.0
N2	C1	C2	120.3	120.6
C1	C2	C3	117.2	119.1
C1	N2	C5	122.2	121.6
C2	C3	H9	119.0	120.8
N2	C5	C4	118.1	120.9
N2	C5	H7	120.9	119.6
C3	C4	H8	119.9	120.3
C4	C5	H7	120.9	119.5
C5	C4	H8	119.9	120.4
H10	C7	H11	109.5	109.5
H10	C7	H12	109.5	109.5
H11	C7	H12	109.4	109.4

Torsion Angles for 3YQ

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O6	P1	O2	C6	96.4	240.0
O2	P1	O5	H1	360.0	180.0
O2	P1	C6	N1	302.4	300.0
O2	P1	C6	P2	184.3	180.0
O2	P1	C6	H3	64.9	60.0
O2	P1	O6	C6	262.8	120.0
O6	P1	O5	H1	157.6	60.0
O6	P1	C6	N1	184.1	60.0
O6	P1	C6	P2	66.0	300.0
O6	P1	C6	H3	306.6	180.0
C6	P1	O5	H1	257.8	300.0
P2	C6	P1	N1	241.9	240.0
P1	C6	N1	C1	156.0	75.0
N1	C6	P1	H3	237.5	240.0
P1	C6	N1	H6	277.8	255.0
P1	C6	P2	O1	185.6	300.0
P2	C6	P1	H3	119.4	120.0
P1	C6	N1	P2	238.1	240.0
P1	C6	N1	H3	118.4	120.1
N1	C6	P2	O1	68.4	180.0
P2	C6	N1	H3	240.3	240.1
C6	N1	C1	C2	194.6	180.0
C6	N1	C1	N2	16.7	0.2
C1	N1	C6	H6	238.2	180.0
P1	C6	P2	N1	117.2	120.0
P1	C6	P2	H3	240.7	239.9
P2	C6	N1	C1	277.9	195.0
N1	C6	P2	H3	123.5	119.9
P2	C6	N1	H6	39.7	15.0
O3	P2	C6	O1	116.5	240.0
C6	P2	O1	H4	109.2	180.0
C1	N1	C6	H3	37.6	315.0
C6	N1	C1	H6	121.8	180.0
N2	C1	N1	C2	182.0	180.2
N1	C1	C2	C3	181.6	179.7
N1	C1	N2	C5	177.6	180.0
C7	C2	C3	H9	0.5	360.0
O3	P2	C6	N1	184.9	60.0
C6	P2	O3	O1	248.7	120.0
O3	P2	C6	H3	61.4	300.1
O3	P2	O1	H4	360.0	300.0
O4	P2	C6	N1	301.6	300.0
O4	P2	C6	H3	178.1	180.1
O4	P2	O1	H4	223.6	60.0
O1	P2	C6	N1	68.4	180.0
O1	P2	C6	H3	304.9	60.1
N1	C1	C2	N2	182.0	180.2
C2	C1	N1	H6	72.8	0.0
C2	C1	N2	C5	359.7	0.2
C1	C2	C3	H9	181.1	180.3
N1	C1	N2	C2	177.9	179.8
N2	C1	N1	H6	254.9	180.3
N2	C1	C2	C3	359.6	359.5
C1	N2	C5	C4	0.3	0.0
C1	N2	C5	H7	180.4	180.0
C2	C3	C4	H8	179.0	179.8
C5	N2	C1	C2	359.7	0.2
C4	C5	N2	H7	180.0	180.0
N2	C5	C4	H8	180.3	179.9
C1	C2	C3	C4	1.1	0.5
C3	C4	C5	H7	180.3	180.0
C5	C4	C3	H8	180.0	179.9
N2	C5	C4	H7	180.0	180.0
C3	C4	C5	H8	180.0	180.1
H2	O6	P1	C6	97.2	180.0
P1	C6	H3	N1	242.5	240.0
P1	C6	H3	P2	122.9	120.0
P2	C6	H3	N1	119.6	119.9
H3	C6	N1	C1	37.6	315.0
H3	C6	N1	H6	159.4	135.0
H3	C6	P2	O1	304.9	60.1
C6	N1	H6	C1	228.2	180.0
H6	N1	C6	H3	159.4	135.0
H6	N1	C1	C2	72.8	0.0
H6	N1	C1	N2	254.9	180.3
N2	C5	H7	C4	180.0	180.0
H7	C5	C4	H8	0.3	359.9
H8	C4	C5	H7	0.3	359.9
H9	C3	C4	H8	358.9	0.0
H11	C7	H10	H12	120.0	120.0
H10	C7	H11	H12	240.0	240.0
H10	C7	H12	H11	120.0	120.0