PDB Chemical Component 3YH

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 3YH

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N1	C2	1.332	1.303
N1	HN1	1.000	0.970
C2	N3	1.264	1.377
C2	C4	1.497	1.481
N3	HN3	1.000	0.970
N3	HN3A	1.000	0.970
C5	C4	1.394	1.395
C4	C9	1.391	1.393
C5	C6	1.393	1.380
C5	H5	1.080	1.080
C6	C7	1.401	1.381
C6	H6	1.080	1.080
C7	C8	1.391	1.394
C7	H7	1.080	1.080
C9	C8	1.392	1.392
C8	C10	1.487	1.483
C9	H9	1.080	1.080
N39	C10	1.355	1.309
C10	C11	1.499	1.478
C11	C41	1.390	1.373
C11	C12	1.505	1.473
O13	C12	1.228	1.216
C12	N14	1.340	1.348
N14	C15	1.366	1.398
N14	HN14	1.000	0.970
C15	C16	1.396	1.390
C15	C20	1.397	1.390
C16	C17	1.396	1.379
C16	H16	1.080	1.080
C17	C18	1.392	1.394
C17	H17	1.080	1.080
C19	C18	1.393	1.395
C18	C21	1.497	1.483
C20	C19	1.400	1.379
C19	H19	1.080	1.080
C20	H20	1.080	1.080
C22	C21	1.401	1.394
C21	C26	1.399	1.394
C22	C23	1.394	1.380
C22	H22	1.080	1.080
C23	C24	1.388	1.383
C23	H23	1.080	1.081
C24	C25	1.391	1.384
C24	H24	1.080	1.080
C26	C25	1.395	1.380
C25	H25	1.080	1.080
C26	S27	1.610	1.762
O28	S27	1.438	1.420
N30	S27	1.600	1.656
S27	O29	1.433	1.422
N30	HN30	1.000	0.969
N30	HN3B	1.000	0.970
N39	O40	1.340	1.206
O40	C41	1.373	1.335
C41	H41	1.080	1.080

Bond Angles for 3YH

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	N1	HN1	112.0	120.0
N1	C2	N3	120.8	120.0
N1	C2	C4	119.5	120.0
N3	C2	C4	119.7	120.0
C2	N3	HN3	120.0	120.0
C2	N3	HN3A	120.0	120.0
C2	C4	C9	119.4	120.1
HN3	N3	HN3A	120.0	119.9
C5	C4	C9	120.2	119.8
C4	C9	C8	119.9	119.7
C4	C9	H9	120.0	120.2
C6	C5	H5	120.0	119.9
C5	C6	C7	119.6	120.3
C5	C6	H6	120.2	119.9
C7	C6	H6	120.2	119.8
C6	C7	C8	120.1	120.1
C6	C7	H7	119.9	119.9
C8	C7	H7	120.0	119.9
C7	C8	C10	121.9	120.1
C9	C8	C10	117.9	120.0
C8	C10	C11	130.5	127.4
C10	C11	C41	107.2	102.8
C10	C11	C12	125.0	128.6
C12	C11	C41	127.7	128.6
C11	C41	O40	103.8	106.5
C11	C41	H41	128.1	126.7
C11	C12	N14	116.8	120.0
O13	C12	N14	122.9	120.0
C12	N14	C15	123.6	120.0
C12	N14	HN14	118.2	120.0
C15	N14	HN14	118.2	120.0
N14	C15	C16	119.8	120.0
N14	C15	C20	121.5	119.9
C16	C15	C20	118.6	120.1
C15	C16	C17	120.9	120.0
C15	C16	H16	119.6	120.0
C15	C20	C19	120.4	120.1
C15	C20	H20	119.8	120.0
C17	C16	H16	119.5	120.0
C16	C17	C18	120.3	120.0
C16	C17	H17	119.9	120.0
C18	C17	H17	119.9	120.0
C17	C18	C21	120.5	120.0
C19	C18	C21	120.3	120.1
C18	C21	C26	124.6	120.2
C20	C19	H19	119.7	120.1
C22	C21	C26	119.4	119.7
C21	C26	C25	118.6	119.9
C21	C26	S27	124.8	120.0
C23	C22	H22	119.3	120.1
C22	C23	C24	119.0	120.2
C22	C23	H23	120.5	120.0
C24	C23	H23	120.5	119.9
C23	C24	C25	119.7	120.2
C23	C24	H24	120.1	120.0
C25	C24	H24	120.1	119.8
C24	C25	H25	119.1	119.9
C26	C25	H25	119.1	119.9
C26	S27	O29	106.4	106.4
O28	S27	O29	110.2	123.1
HN30	N30	HN3B	109.5	120.0
N39	O40	C41	115.6	113.4
O40	C41	H41	128.1	126.8

Torsion Angles for 3YH

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
N3	C2	N1	C4	180.5	180.0
N1	C2	N3	HN3	179.5	0.0
N1	C2	N3	HN3A	359.5	180.0
N1	C2	C4	C9	168.7	359.9
HN1	N1	C2	N3	180.5	180.0
HN1	N1	C2	C4	360.0	0.0
N3	C2	N1	HN1	180.5	180.0
N1	C2	N3	C4	179.5	180.0
N3	C2	C4	C9	348.3	180.0
HN3	N3	C2	HN3A	180.0	180.1
C4	C2	N1	HN1	360.0	0.0
N1	C2	C4	N3	180.5	180.0
C4	C2	N3	HN3	360.0	180.0
C4	C2	N3	HN3A	180.0	359.9
C5	C4	C2	C9	180.0	180.4
C2	C4	C9	C8	180.2	179.8
C2	C4	C9	H9	0.2	0.1
HN3	N3	C2	C4	360.0	180.0
C2	N3	HN3	HN3A	180.0	179.9
HN3A	N3	C2	C4	180.0	359.9
C2	N3	HN3A	HN3	180.0	180.1
C2	C4	C5	C9	180.0	179.6
C5	C4	C9	C8	0.3	359.4
C5	C4	C9	H9	180.3	179.7
C4	C9	C8	C10	181.4	180.3
C6	C5	C4	C9	0.9	0.4
C7	C6	C5	H6	180.0	180.0
C5	C6	C7	C8	359.6	360.0
C5	C6	C7	H7	179.6	179.9
H5	C5	C4	C9	180.9	180.3
H5	C5	C6	C7	179.2	180.0
H5	C5	C6	H6	359.2	0.0
C7	C6	C5	H5	179.2	180.0
C5	C6	C7	H6	180.0	180.0
C8	C7	C6	H7	180.0	180.0
C6	C7	C8	C10	178.5	180.0
H6	C6	C5	H5	359.2	0.0
C5	C6	H6	C7	180.0	180.0
H6	C6	C7	C8	179.6	180.0
H6	C6	C7	H7	359.6	359.9
C4	C9	C8	C7	358.5	0.5
C8	C7	C6	H6	179.6	180.0
C6	C7	C8	H7	180.0	180.0
C9	C8	C7	C10	183.0	179.8
C7	C8	C10	C11	83.7	325.1
H7	C7	C6	H6	359.6	359.9
C6	C7	H7	C8	180.0	180.0
H7	C7	C8	C10	358.5	0.0
C4	C9	C8	H9	180.0	180.3
C9	C8	C7	H7	181.5	179.8
C7	C8	C9	C10	177.1	180.2
C9	C8	C10	C11	260.8	145.3
C10	C8	C7	H7	358.5	0.0
C8	C10	C11	C41	178.5	179.9
C8	C10	C11	C12	358.3	359.9
C4	C9	H9	C8	180.0	179.7
H9	C9	C8	C10	1.4	360.0
N39	C10	C11	C41	0.9	0.2
C12	C11	C10	C41	179.8	180.0
C10	C11	C41	O40	359.3	359.8
C10	C11	C41	H41	179.3	180.0
C10	C11	C12	N14	163.2	180.0
C10	C11	C41	C12	179.8	180.0
C41	C11	C12	N14	342.9	0.1
N39	O40	C41	C11	0.3	0.0
O40	C41	C11	H41	180.0	179.8
C10	C11	C12	C41	180.2	180.0
C12	C11	C41	O40	179.5	179.8
C12	C11	C41	H41	359.4	360.0
O13	C12	C11	N14	179.2	180.0
C11	C12	N14	C15	186.1	174.7
C11	C12	N14	HN14	6.1	354.7
O13	C12	C11	C41	162.1	180.1
C11	C12	O13	N14	180.9	180.0
O13	C12	N14	C15	6.9	354.7
O13	C12	N14	HN14	186.9	174.7
N14	C12	C11	C41	342.9	0.1
C15	N14	C12	HN14	180.0	180.0
C12	N14	C15	C16	296.6	146.8
C12	N14	C15	C20	119.3	326.5
C12	N14	C15	HN14	180.0	180.0
C16	C15	N14	C20	177.3	180.3
N14	C15	C16	C17	181.0	180.0
N14	C15	C16	H16	1.0	359.9
N14	C15	C20	C19	179.2	179.7
N14	C15	C20	H20	359.2	0.1
C12	N14	HN14	C15	180.0	180.0
HN14	N14	C15	C16	116.6	326.9
HN14	N14	C15	C20	299.3	146.5
C16	C15	N14	HN14	116.6	326.9
N14	C15	C16	C20	182.6	179.7
C16	C15	C20	C19	1.9	359.4
C16	C15	C20	H20	181.8	179.7
C17	C16	C15	H16	180.0	180.1
C15	C16	C17	C18	1.2	0.0
C15	C16	C17	H17	181.2	180.0
C20	C15	N14	HN14	299.3	146.5
N14	C15	C20	C16	177.4	180.3
C20	C15	C16	C17	358.4	0.3
C20	C15	C16	H16	178.4	180.2
C15	C20	C19	H19	178.4	180.3
C17	C16	C15	C20	358.4	0.3
C15	C16	C17	H16	180.0	179.9
C18	C17	C16	H17	180.0	180.0
C16	C17	C18	C21	181.0	180.0
H16	C16	C15	C20	178.4	180.2
C15	C16	H16	C17	180.0	180.1
H16	C16	C17	C18	181.2	180.1
H16	C16	C17	H17	1.2	0.0
C18	C17	C16	H16	181.2	180.1
C16	C17	C18	H17	180.0	180.0
C19	C18	C17	C21	178.1	180.0
C17	C18	C21	C26	279.3	294.2
H17	C17	C16	H16	1.2	0.0
C16	C17	H17	C18	180.0	180.0
H17	C17	C18	C21	1.0	0.0
C15	C20	C19	C18	358.4	0.6
C19	C18	C17	H17	179.1	180.0
C17	C18	C19	C21	181.9	180.0
C19	C18	C21	C26	101.2	114.2
C21	C18	C17	H17	1.0	0.0
C22	C21	C18	C26	180.5	180.3
C18	C21	C26	C25	180.4	179.7
C18	C21	C26	S27	1.0	0.1
C15	C20	C19	H20	180.0	180.4
C20	C19	C18	C21	179.2	179.7
H19	C19	C18	C21	359.2	0.0
C15	C20	H20	C19	180.0	179.6
H20	C20	C19	H19	358.4	359.9
C18	C21	C22	C26	179.5	179.7
C22	C21	C26	C25	359.8	359.4
C22	C21	C26	S27	180.4	179.7
C21	C26	C25	H25	179.8	180.3
C21	C26	S27	O29	201.6	184.1
C23	C22	C21	C26	0.4	0.3
C24	C23	C22	H23	180.0	180.0
C22	C23	C24	C25	0.0	0.0
C22	C23	C24	H24	180.0	180.0
H22	C22	C21	C26	180.5	180.3
H22	C22	C23	C24	179.6	180.0
H22	C22	C23	H23	359.6	0.0
C24	C23	C22	H22	179.6	180.0
C22	C23	C24	H23	180.0	180.0
C25	C24	C23	H24	180.0	180.0
C23	C24	C25	H25	180.3	180.0
H23	C23	C22	H22	359.6	0.0
C22	C23	H23	C24	180.0	180.0
H23	C23	C24	C25	180.0	180.1
H23	C23	C24	H24	0.0	0.0
C21	C26	C25	C24	359.8	0.6
C25	C24	C23	H23	180.0	180.1
C23	C24	C25	H24	180.0	180.0
C26	C25	C24	H25	180.0	179.6
H24	C24	C23	H23	0.0	0.0
C23	C24	H24	C25	180.0	180.0
H24	C24	C25	H25	0.3	0.1
C21	C26	C25	S27	180.5	180.3
C26	C25	C24	H24	180.2	179.7
C24	C25	C26	H25	180.0	180.4
H25	C25	C24	H24	0.3	0.1
C21	C26	S27	C25	179.4	179.7
S27	C26	C25	H25	359.3	359.9
O28	S27	C26	O29	120.4	227.1
C26	S27	O28	O29	241.8	123.0
C11	C41	O40	N39	0.3	0.0
N39	O40	C41	H41	180.3	179.9
C11	C41	O40	H41	180.0	180.2
C11	C41	H41	O40	180.0	179.8