PDB Chemical Component 3XT
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 3XT
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C10 |
C11 |
1.539 |
1.530 |
| C10 |
C9 |
1.515 |
1.530 |
| C11 |
C6 |
1.553 |
1.530 |
| O14 |
C13 |
1.255 |
1.216 |
| C9 |
C8 |
1.550 |
1.530 |
| C16 |
C15 |
1.383 |
1.398 |
| C16 |
C17 |
1.347 |
1.378 |
| C13 |
C15 |
1.447 |
1.476 |
| C13 |
N12 |
1.370 |
1.347 |
| F22 |
C17 |
1.387 |
1.351 |
| C15 |
C20 |
1.393 |
1.397 |
| C17 |
C18 |
1.402 |
1.394 |
| N12 |
C6 |
1.449 |
1.465 |
| C6 |
C4 |
1.533 |
1.506 |
| C6 |
C7 |
1.538 |
1.531 |
| N3 |
C4 |
1.346 |
1.348 |
| N3 |
C2 |
1.442 |
1.465 |
| C20 |
C19 |
1.411 |
1.377 |
| C18 |
C19 |
1.389 |
1.392 |
| C18 |
N21 |
1.390 |
1.392 |
| C8 |
C7 |
1.511 |
1.531 |
| C4 |
O5 |
1.239 |
1.213 |
| C2 |
C1 |
1.513 |
1.507 |
| C1 |
N1 |
1.301 |
1.280 |
| C11 |
H1 |
1.100 |
1.090 |
| C11 |
H2 |
1.100 |
1.091 |
| C10 |
H3 |
1.100 |
1.090 |
| C10 |
H4 |
1.101 |
1.091 |
| C9 |
H5 |
1.100 |
1.089 |
| C9 |
H6 |
1.100 |
1.090 |
| C8 |
H7 |
1.100 |
1.090 |
| C8 |
H8 |
1.100 |
1.090 |
| C1 |
H9 |
1.080 |
1.080 |
| C2 |
H10 |
1.100 |
1.090 |
| C2 |
H11 |
1.099 |
1.090 |
| N1 |
H12 |
1.000 |
0.970 |
| C7 |
H13 |
1.100 |
1.090 |
| C7 |
H14 |
1.100 |
1.090 |
| C16 |
H15 |
1.080 |
1.079 |
| C19 |
H16 |
1.080 |
1.080 |
| C20 |
H17 |
1.080 |
1.080 |
| N3 |
H18 |
1.000 |
0.970 |
| N12 |
H19 |
1.000 |
0.969 |
| N21 |
H20 |
1.000 |
0.970 |
| N21 |
H21 |
1.000 |
0.970 |
Bond Angles for 3XT
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C10 |
C11 |
C6 |
109.4 |
109.5 |
| C10 |
C11 |
H1 |
109.5 |
109.5 |
| C10 |
C11 |
H2 |
109.5 |
109.4 |
| C10 |
C9 |
C8 |
109.5 |
109.4 |
| C9 |
C10 |
H3 |
109.1 |
109.4 |
| C9 |
C10 |
H4 |
109.1 |
109.5 |
| C10 |
C9 |
H5 |
109.5 |
109.4 |
| C10 |
C9 |
H6 |
109.5 |
109.5 |
| C11 |
C6 |
C4 |
114.2 |
109.5 |
| C11 |
C6 |
C7 |
108.2 |
109.5 |
| C6 |
C11 |
H1 |
109.5 |
109.5 |
| C6 |
C11 |
H2 |
109.5 |
109.5 |
| O14 |
C13 |
N12 |
117.8 |
120.0 |
| C9 |
C8 |
C7 |
113.1 |
109.5 |
| C8 |
C9 |
H5 |
109.5 |
109.5 |
| C8 |
C9 |
H6 |
109.5 |
109.5 |
| C9 |
C8 |
H7 |
108.6 |
109.5 |
| C9 |
C8 |
H8 |
108.6 |
109.5 |
| C16 |
C15 |
C20 |
119.4 |
119.9 |
| C16 |
C17 |
C18 |
125.0 |
120.0 |
| C17 |
C16 |
H15 |
120.9 |
120.1 |
| C15 |
C13 |
N12 |
119.7 |
120.0 |
| C13 |
C15 |
C20 |
123.0 |
120.0 |
| C13 |
N12 |
H19 |
118.5 |
120.1 |
| C15 |
C20 |
C19 |
121.4 |
120.0 |
| C15 |
C20 |
H17 |
119.3 |
120.0 |
| C17 |
C18 |
C19 |
116.9 |
120.1 |
| C17 |
C18 |
N21 |
121.5 |
120.0 |
| C6 |
C7 |
H13 |
108.7 |
109.5 |
| C6 |
C7 |
H14 |
108.7 |
109.5 |
| N3 |
C2 |
H10 |
107.3 |
109.5 |
| N3 |
C2 |
H11 |
107.2 |
109.5 |
| C20 |
C19 |
H16 |
120.6 |
120.0 |
| C19 |
C18 |
N21 |
121.6 |
119.9 |
| C18 |
C19 |
H16 |
120.5 |
119.9 |
| C18 |
N21 |
H20 |
109.5 |
120.0 |
| C18 |
N21 |
H21 |
109.5 |
120.0 |
| C7 |
C8 |
H7 |
108.5 |
109.4 |
| C7 |
C8 |
H8 |
108.6 |
109.5 |
| C8 |
C7 |
H13 |
108.7 |
109.5 |
| C8 |
C7 |
H14 |
108.7 |
109.5 |
| C2 |
C1 |
N1 |
128.0 |
120.0 |
| C2 |
C1 |
H9 |
116.0 |
120.0 |
| N1 |
C1 |
H9 |
116.0 |
120.0 |
| C1 |
N1 |
H12 |
112.0 |
119.9 |
| H1 |
C11 |
H2 |
109.5 |
109.4 |
| H3 |
C10 |
H4 |
109.5 |
109.5 |
| H5 |
C9 |
H6 |
109.5 |
109.5 |
| H7 |
C8 |
H8 |
109.5 |
109.5 |
| H10 |
C2 |
H11 |
109.5 |
109.4 |
| H13 |
C7 |
H14 |
109.5 |
109.5 |
| H20 |
N21 |
H21 |
109.4 |
120.0 |
Torsion Angles for 3XT
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C10 |
C11 |
C6 |
C4 |
182.4 |
180.1 |
| C10 |
C11 |
C6 |
C7 |
300.2 |
300.0 |
| C6 |
C11 |
C10 |
H1 |
240.0 |
239.9 |
| C6 |
C11 |
C10 |
H2 |
120.0 |
120.0 |
| H1 |
C11 |
C10 |
H2 |
240.0 |
240.1 |
| C9 |
C10 |
C11 |
C6 |
62.6 |
60.0 |
| C9 |
C10 |
C11 |
H1 |
182.6 |
180.1 |
| C9 |
C10 |
C11 |
H2 |
302.6 |
300.0 |
| C10 |
C9 |
C8 |
C7 |
52.8 |
60.0 |
| C8 |
C9 |
C10 |
H5 |
240.0 |
240.0 |
| C8 |
C9 |
C10 |
H6 |
120.0 |
119.9 |
| C10 |
C9 |
C8 |
H7 |
173.3 |
179.9 |
| C10 |
C9 |
C8 |
H8 |
292.2 |
300.0 |
| H3 |
C10 |
C9 |
H4 |
119.6 |
120.0 |
| H5 |
C9 |
C10 |
H6 |
240.0 |
239.9 |
| C10 |
C11 |
C6 |
H1 |
120.0 |
120.0 |
| C10 |
C11 |
C6 |
H2 |
240.0 |
240.0 |
| C11 |
C6 |
C7 |
H13 |
176.3 |
300.0 |
| C11 |
C6 |
C7 |
H14 |
295.4 |
180.0 |
| H1 |
C11 |
C6 |
H2 |
120.1 |
120.0 |
| C15 |
C13 |
O14 |
N12 |
182.3 |
180.0 |
| O14 |
C13 |
N12 |
H19 |
170.1 |
175.1 |
| C8 |
C9 |
C10 |
H3 |
182.5 |
179.9 |
| C8 |
C9 |
C10 |
H4 |
62.9 |
60.0 |
| C10 |
C9 |
C8 |
H5 |
120.0 |
120.0 |
| C10 |
C9 |
C8 |
H6 |
240.0 |
240.1 |
| C7 |
C8 |
C9 |
H7 |
239.5 |
240.1 |
| C7 |
C8 |
C9 |
H8 |
120.5 |
120.0 |
| C9 |
C8 |
C7 |
H13 |
186.3 |
60.0 |
| C9 |
C8 |
C7 |
H14 |
67.2 |
180.0 |
| H5 |
C9 |
C8 |
H6 |
120.0 |
120.1 |
| H7 |
C8 |
C9 |
H8 |
241.1 |
239.9 |
| C16 |
C15 |
C13 |
N12 |
198.6 |
0.3 |
| C13 |
C15 |
C16 |
C20 |
176.2 |
179.7 |
| C16 |
C15 |
C20 |
C19 |
3.5 |
359.4 |
| C16 |
C15 |
C20 |
H17 |
183.5 |
179.8 |
| C17 |
C16 |
C15 |
C20 |
358.2 |
0.3 |
| C16 |
C17 |
C18 |
C19 |
3.1 |
0.0 |
| C16 |
C17 |
C18 |
N21 |
184.6 |
180.0 |
| O14 |
C13 |
C15 |
N12 |
177.6 |
180.0 |
| C16 |
C15 |
C13 |
C20 |
184.0 |
180.3 |
| C15 |
C13 |
N12 |
H19 |
347.8 |
355.1 |
| C13 |
C15 |
C20 |
C19 |
187.6 |
179.7 |
| C13 |
C15 |
C20 |
H17 |
7.6 |
0.1 |
| N12 |
C13 |
C15 |
C20 |
14.7 |
180.0 |
| F22 |
C17 |
C16 |
H15 |
0.9 |
360.0 |
| C20 |
C15 |
C13 |
N12 |
14.7 |
180.0 |
| C15 |
C20 |
C19 |
H16 |
178.1 |
180.3 |
| C18 |
C17 |
C16 |
H15 |
178.4 |
180.0 |
| C19 |
C18 |
C17 |
N21 |
178.5 |
180.0 |
| C17 |
C18 |
C19 |
H16 |
178.7 |
180.0 |
| C17 |
C18 |
N21 |
H20 |
180.0 |
359.9 |
| C17 |
C18 |
N21 |
H21 |
300.0 |
180.0 |
| N12 |
C6 |
C11 |
H1 |
300.3 |
299.9 |
| N12 |
C6 |
C11 |
H2 |
180.2 |
180.0 |
| N12 |
C6 |
C7 |
H13 |
55.4 |
180.0 |
| N12 |
C6 |
C7 |
H14 |
174.5 |
60.0 |
| C11 |
C6 |
C4 |
C7 |
119.0 |
120.0 |
| C4 |
C6 |
C11 |
H1 |
62.5 |
60.0 |
| C4 |
C6 |
C11 |
H2 |
302.4 |
300.0 |
| C4 |
C6 |
C7 |
H13 |
299.2 |
60.0 |
| C4 |
C6 |
C7 |
H14 |
58.3 |
300.0 |
| C11 |
C6 |
C7 |
C4 |
237.1 |
240.0 |
| C7 |
C6 |
C11 |
H1 |
180.2 |
180.0 |
| C7 |
C6 |
C11 |
H2 |
60.2 |
60.0 |
| C6 |
C7 |
C8 |
H7 |
186.2 |
180.0 |
| C6 |
C7 |
C8 |
H8 |
67.3 |
60.0 |
| C8 |
C7 |
C6 |
H13 |
239.5 |
120.0 |
| C8 |
C7 |
C6 |
H14 |
120.5 |
240.0 |
| H13 |
C7 |
C6 |
H14 |
240.9 |
120.0 |
| C4 |
N3 |
C2 |
H10 |
29.3 |
60.0 |
| C4 |
N3 |
C2 |
H11 |
146.8 |
300.0 |
| N3 |
C2 |
C1 |
H9 |
3.4 |
305.0 |
| H10 |
C2 |
N3 |
H11 |
242.5 |
120.0 |
| C15 |
C20 |
C19 |
H17 |
180.0 |
180.4 |
| C20 |
C19 |
C18 |
N21 |
177.2 |
179.6 |
| C18 |
C19 |
C20 |
H16 |
180.0 |
180.4 |
| C15 |
C20 |
C19 |
C18 |
358.1 |
0.6 |
| C17 |
C18 |
C19 |
N21 |
181.5 |
180.0 |
| C20 |
C19 |
C18 |
H16 |
180.0 |
179.6 |
| C19 |
C18 |
N21 |
H20 |
1.6 |
179.9 |
| C19 |
C18 |
N21 |
H21 |
121.6 |
360.0 |
| C17 |
C18 |
N21 |
C19 |
178.4 |
180.0 |
| N21 |
C18 |
C19 |
H16 |
357.2 |
0.0 |
| H20 |
N21 |
C18 |
H21 |
240.0 |
180.0 |
| C11 |
C6 |
C7 |
C8 |
55.8 |
60.0 |
| C7 |
C8 |
C9 |
H5 |
292.7 |
300.1 |
| C7 |
C8 |
C9 |
H6 |
172.7 |
180.0 |
| C9 |
C8 |
C7 |
H7 |
120.6 |
120.0 |
| C9 |
C8 |
C7 |
H8 |
239.5 |
240.0 |
| C6 |
C7 |
C8 |
H13 |
120.4 |
240.0 |
| C6 |
C7 |
C8 |
H14 |
239.5 |
120.0 |
| H7 |
C8 |
C7 |
H8 |
118.9 |
120.0 |
| H13 |
C7 |
C8 |
H14 |
119.1 |
240.0 |
| C11 |
C6 |
C4 |
O5 |
192.3 |
95.1 |
| N1 |
C1 |
C2 |
H9 |
180.0 |
180.0 |
| C2 |
C1 |
N1 |
H12 |
180.0 |
180.0 |
| C2 |
C1 |
N1 |
H9 |
180.0 |
180.0 |
| C10 |
C11 |
H1 |
C6 |
240.1 |
240.0 |
| C10 |
C11 |
H1 |
H2 |
120.0 |
119.9 |
| H1 |
C11 |
C6 |
C4 |
62.5 |
60.0 |
| H1 |
C11 |
C6 |
C7 |
180.2 |
180.0 |
| C6 |
C11 |
H1 |
H2 |
239.9 |
240.0 |
| C10 |
C11 |
H2 |
C6 |
119.9 |
120.0 |
| C10 |
C11 |
H2 |
H1 |
240.0 |
240.0 |
| H2 |
C11 |
C6 |
C4 |
302.4 |
300.0 |
| H2 |
C11 |
C6 |
C7 |
60.2 |
60.0 |
| C6 |
C11 |
H2 |
H1 |
120.1 |
120.0 |
| H3 |
C10 |
C11 |
C6 |
182.8 |
180.0 |
| H3 |
C10 |
C11 |
H1 |
302.8 |
300.1 |
| H3 |
C10 |
C11 |
H2 |
62.8 |
60.0 |
| H3 |
C10 |
C9 |
C8 |
182.5 |
179.9 |
| C9 |
C10 |
H3 |
H4 |
240.6 |
240.0 |
| H3 |
C10 |
C9 |
H5 |
302.5 |
299.9 |
| H3 |
C10 |
C9 |
H6 |
62.5 |
60.0 |
| H4 |
C10 |
C11 |
C6 |
302.4 |
300.0 |
| H4 |
C10 |
C11 |
H1 |
62.4 |
60.1 |
| H4 |
C10 |
C11 |
H2 |
182.4 |
180.0 |
| H4 |
C10 |
C9 |
C8 |
62.9 |
60.0 |
| C9 |
C10 |
H4 |
H3 |
119.4 |
120.0 |
| H4 |
C10 |
C9 |
H5 |
182.9 |
180.0 |
| H4 |
C10 |
C9 |
H6 |
302.9 |
300.0 |
| C10 |
C9 |
H5 |
C8 |
240.0 |
240.1 |
| H5 |
C9 |
C10 |
H3 |
302.5 |
299.9 |
| H5 |
C9 |
C10 |
H4 |
182.9 |
180.0 |
| C10 |
C9 |
H5 |
H6 |
120.0 |
120.0 |
| H5 |
C9 |
C8 |
C7 |
292.7 |
300.1 |
| C8 |
C9 |
H5 |
H6 |
240.0 |
240.0 |
| H5 |
C9 |
C8 |
H7 |
53.3 |
60.0 |
| H5 |
C9 |
C8 |
H8 |
172.2 |
180.1 |
| C10 |
C9 |
H6 |
C8 |
120.0 |
119.9 |
| H6 |
C9 |
C10 |
H3 |
62.5 |
60.0 |
| H6 |
C9 |
C10 |
H4 |
302.9 |
300.0 |
| C10 |
C9 |
H6 |
H5 |
240.0 |
240.0 |
| H6 |
C9 |
C8 |
C7 |
172.7 |
180.0 |
| C8 |
C9 |
H6 |
H5 |
120.0 |
120.1 |
| H6 |
C9 |
C8 |
H7 |
293.3 |
299.9 |
| H6 |
C9 |
C8 |
H8 |
52.2 |
60.0 |
| C9 |
C8 |
H7 |
C7 |
236.7 |
240.0 |
| H7 |
C8 |
C9 |
H5 |
53.3 |
60.0 |
| H7 |
C8 |
C9 |
H6 |
293.3 |
299.9 |
| C9 |
C8 |
H7 |
H8 |
118.4 |
120.1 |
| C7 |
C8 |
H7 |
H8 |
241.7 |
240.0 |
| H7 |
C8 |
C7 |
H13 |
65.7 |
300.0 |
| H7 |
C8 |
C7 |
H14 |
306.7 |
60.0 |
| C9 |
C8 |
H8 |
C7 |
123.3 |
120.0 |
| H8 |
C8 |
C9 |
H5 |
172.2 |
180.1 |
| H8 |
C8 |
C9 |
H6 |
52.2 |
60.0 |
| C9 |
C8 |
H8 |
H7 |
241.6 |
239.9 |
| C7 |
C8 |
H8 |
H7 |
118.3 |
119.9 |
| H8 |
C8 |
C7 |
H13 |
306.8 |
180.0 |
| H8 |
C8 |
C7 |
H14 |
187.7 |
300.0 |
| C2 |
C1 |
H9 |
N1 |
180.0 |
180.0 |
| H9 |
C1 |
N1 |
H12 |
0.0 |
359.9 |
| N3 |
C2 |
H10 |
H11 |
116.1 |
240.0 |
| H10 |
C2 |
C1 |
N1 |
62.2 |
245.0 |
| H10 |
C2 |
C1 |
H9 |
242.2 |
65.0 |
| N3 |
C2 |
H11 |
H10 |
243.9 |
120.0 |
| H11 |
C2 |
C1 |
N1 |
304.6 |
5.0 |
| H11 |
C2 |
C1 |
H9 |
124.6 |
185.0 |
| H12 |
N1 |
C1 |
H9 |
0.0 |
359.9 |
| C6 |
C7 |
H13 |
H14 |
118.6 |
240.0 |
| H13 |
C7 |
C8 |
H7 |
65.7 |
300.0 |
| H13 |
C7 |
C8 |
H8 |
306.8 |
180.0 |
| C8 |
C7 |
H13 |
H14 |
241.4 |
120.0 |
| C6 |
C7 |
H14 |
H13 |
241.4 |
120.0 |
| H14 |
C7 |
C8 |
H7 |
306.7 |
60.0 |
| H14 |
C7 |
C8 |
H8 |
187.7 |
300.0 |
| C8 |
C7 |
H14 |
H13 |
118.6 |
240.0 |
| H15 |
C16 |
C15 |
C20 |
178.2 |
180.3 |
| H15 |
C16 |
C17 |
C18 |
178.4 |
180.0 |
| H16 |
C19 |
C18 |
N21 |
357.2 |
0.0 |
| C15 |
C20 |
H17 |
C19 |
180.0 |
179.6 |
| H17 |
C20 |
C19 |
H16 |
358.1 |
359.9 |
| H18 |
N3 |
C2 |
H10 |
209.3 |
240.0 |
| H18 |
N3 |
C2 |
H11 |
326.8 |
120.0 |
| C18 |
N21 |
H20 |
H21 |
120.0 |
180.0 |
| C18 |
N21 |
H21 |
H20 |
240.0 |
180.0 |