Atom Nomenclature for 3WZ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 3WZ

Atom Name (V3) Atom Name (V2)
N5 N3
C35 C2
C34 C5
O8 O6
C36 C1
C37 C4
N4 N5
C30 C26
C29 C25
O7 O5
C31 C30
C33 C3
C32 C6
N3 N1
C6 C9
C3 C27
C5 C24
C7 C8
C8 C14
O6 O3
O1 O4
C2 C28
C1 C29
C4 C7
C28 C31
C27 C32
C10 C21
C15 C23
C14 C22
C26 C18
C16 C16
N1 N4
C12 C19
C11 C20
C9 C10
C13 C11
O5 O1
O2 O2
N2 N2
C17 C33
C25 C34
O3 O8
C18 C15
C19 C17
C20 C12
C24 C37
C21 C13
C23 C36
C22 C35
O4 O7
H25 H25
H26 H26
H1 H1
H2 H2
H3 H3
H7 H7
H8 H8
H9 H9
H44 H44
H43 H43
H51 H51
H4 H4
H5 H5
H6 H6
H10 H10
H11 H11
H12 H12
H19 H19
H45 H45
H42 H42
H17 H17
H18 H18
H46 H46
H47 H47
H48 H48
H49 H49
H50 H50
H13 H13
H14 H14
H15 H15
H52 H52
H53 H53
H54 H54
H55 H55
H56 H56
H57 H57
H36 H36
H37 H37
H39 H39
H40 H40
H41 H41
H38 H38
H30 H30
H31 H31
H32 H32
H33 H33
H35 H35
H34 H34
H20 H20
H21 H21
H22 H22
H16 H16
H58 H58
H28 H28
H29 H29
H23 H23
H61 H61
H24 H24
H60 H60
H59 H59
H62 H62