Atom Nomenclature for 3WV

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 3WV

Atom Name (V3) Atom Name (V2)
C36 C1
C35 C2
C37 C4
C34 C5
N5 N3
O8 O6
C38 C32
N4 N5
C30 C25
C29 C24
O7 O5
C31 C29
C33 C3
C32 C6
N3 N1
C20 C12
C21 C13
C19 C17
C26 C18
C27 C22
O5 O3
O6 O4
C23 C26
C24 C27
C22 C28
C25 C30
C28 C31
C4 C7
C7 C8
C6 C9
C9 C10
C8 C14
N1 N4
C2 C19
C3 C20
C1 C21
C5 C23
O1 O1
O2 O2
N2 N2
C10 C33
C11 C35
O4 O8
C12 C34
C13 C11
C18 C15
C14 C36
C17 C38
C15 C37
C16 C16
O3 O7
H1 H1
H2 H2
H3 H3
H7 H7
H8 H8
H9 H9
H25 H25
H55 H55
H56 H56
H57 H57
H39 H39
H38 H38
H48 H48
H4 H4
H5 H5
H6 H6
H10 H10
H11 H11
H12 H12
H23 H23
H24 H24
H29 H29
H30 H30
H31 H31
H40 H40
H41 H41
H42 H42
H43 H43
H44 H44
H45 H45
H46 H46
H47 H47
H49 H49
H50 H50
H51 H51
H52 H52
H53 H53
H54 H54
H13 H13
H14 H14
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36
H37 H37
H15 H15
H58 H58
H59 H59
H60 H60
H27 H27
H61 H61
H63 H63
H62 H62
H28 H28
H64 H64