Atom Nomenclature for 3W8

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 3W8

Atom Name (V3) Atom Name (V2)
CAM CAM
CAL CAL
OAH OAH
CAD CAD
CAC CAC
CAB CAB
CAA CAA
SAG SAG
OAI OAI
OAJ OAJ
NAK NAK
CAF CAF
CAE CAE
HAN HAN
HAO HAO
HAP HAP
HAL HAL
HAM HAM
HAC HAC
HAB HAB
HAQ HAQ
HAK HAK
HAF HAF
HAE HAE