PDB Chemical Component 3VP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 3VP

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C4	C3	1.404	1.385
C4	C5	1.401	1.385
C4	F2	1.327	1.350
N2	C13	1.379	1.376
C7	C8	1.561	1.531
C7	C3	1.519	1.507
C7	C11	1.547	1.524
C7	N1	1.467	1.446
C6	C1	1.398	1.385
C6	C5	1.393	1.383
C6	F1	1.324	1.351
C9	O1	1.406	1.429
C9	C10	1.532	1.531
C9	C14	1.553	1.530
C13	S1	1.784	1.759
C13	N1	1.298	1.272
C8	O1	1.399	1.430
C1	C2	1.389	1.382
C2	C3	1.397	1.382
C10	C11	1.530	1.531
C11	C12	1.518	1.532
C12	S1	1.817	1.812
C14	F3	1.349	1.399
N2	H12	1.000	0.970
N2	H13	1.000	0.970
C9	H1	1.101	1.090
C8	H6	1.100	1.091
C8	H7	1.100	1.090
C1	H3	1.080	1.080
C2	H4	1.080	1.079
C5	H5	1.080	1.080
C10	H8	1.100	1.090
C10	H9	1.100	1.090
C11	H2	1.100	1.090
C12	H10	1.100	1.090
C12	H11	1.100	1.090
C14	H14	1.100	1.091
C14	H15	1.100	1.090

Bond Angles for 3VP

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C3	C4	C5	123.1	120.0
C3	C4	F2	121.1	120.0
C4	C3	C7	122.0	120.0
C4	C3	C2	116.7	120.0
C5	C4	F2	115.8	120.0
C4	C5	C6	117.6	119.9
C4	C5	H5	121.2	120.0
N2	C13	S1	111.6	118.1
N2	C13	N1	119.6	118.3
C13	N2	H12	120.0	120.0
C13	N2	H13	120.0	120.0
C8	C7	C3	110.0	108.2
C8	C7	C11	109.6	109.3
C8	C7	N1	102.6	110.2
C7	C8	O1	111.5	109.3
C7	C8	H6	109.0	109.5
C7	C8	H7	109.0	109.5
C3	C7	C11	110.2	108.2
C3	C7	N1	110.8	108.3
C7	C3	C2	121.2	120.0
C11	C7	N1	113.5	112.5
C7	C11	C10	110.1	109.4
C7	C11	C12	111.1	109.6
C7	C11	H2	107.6	109.5
C7	N1	C13	122.2	129.6
C1	C6	C5	121.4	120.0
C1	C6	F1	119.6	120.0
C6	C1	C2	119.0	120.0
C6	C1	H3	120.5	120.0
C5	C6	F1	119.0	120.0
C6	C5	H5	121.2	120.1
O1	C9	C10	110.2	109.5
O1	C9	C14	104.3	109.5
C9	O1	C8	113.6	114.1
O1	C9	H1	112.1	109.5
C10	C9	C14	110.0	109.5
C9	C10	C11	109.0	109.1
C10	C9	H1	110.2	109.5
C9	C10	H8	109.6	109.5
C9	C10	H9	109.6	109.6
C9	C14	F3	109.8	109.5
C14	C9	H1	109.9	109.4
C9	C14	H14	109.4	109.5
C9	C14	H15	109.4	109.5
S1	C13	N1	128.7	123.5
C13	S1	C12	100.5	99.6
O1	C8	H6	109.0	109.5
O1	C8	H7	109.0	109.5
C1	C2	C3	122.2	120.1
C2	C1	H3	120.5	120.0
C1	C2	H4	118.9	120.0
C3	C2	H4	118.9	120.0
C10	C11	C12	112.0	109.4
C11	C10	H8	109.6	109.5
C11	C10	H9	109.6	109.5
C10	C11	H2	107.9	109.5
C11	C12	S1	114.3	108.1
C12	C11	H2	108.0	109.5
C11	C12	H10	108.3	109.7
C11	C12	H11	108.3	109.7
S1	C12	H10	108.3	109.8
S1	C12	H11	108.2	109.8
F3	C14	H14	109.4	109.5
F3	C14	H15	109.3	109.4
H12	N2	H13	120.0	120.0
H6	C8	H7	109.5	109.5
H8	C10	H9	109.5	109.6
H10	C12	H11	109.5	109.7
H14	C14	H15	109.5	109.4

Torsion Angles for 3VP

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C5	C4	C3	F2	179.5	180.3
C3	C4	C5	C6	359.0	360.0
C3	C4	C5	H5	179.0	180.0
C8	C7	C3	C4	58.0	60.0
C4	C3	C7	C11	297.2	301.7
C4	C3	C7	N1	170.7	179.4
C7	C3	C4	C2	181.7	180.0
C1	C2	C3	C4	0.9	0.0
C4	C3	C2	H4	180.9	179.9
C3	C4	C5	F2	180.5	179.7
C5	C4	C3	C7	182.0	180.1
C5	C4	C3	C2	0.4	0.0
C1	C6	C5	C4	0.3	360.0
C4	C5	C6	F1	180.6	180.1
C6	C5	C4	H5	180.0	180.0
C3	C4	F2	C5	179.5	180.3
F2	C4	C3	C7	2.5	359.7
F2	C4	C3	C2	180.9	179.7
F2	C4	C5	C6	178.5	180.3
F2	C4	C5	H5	358.5	0.3
C7	N1	C13	N2	184.5	182.0
S1	C13	N2	N1	180.0	179.5
N2	C13	S1	C12	179.2	164.1
H12	N2	C13	H13	180.0	180.0
C4	C3	C7	C8	58.0	60.0
C3	C7	C8	C11	238.8	242.3
C3	C7	C8	N1	117.9	118.2
C8	C7	C3	C2	239.8	240.0
C11	C7	C8	N1	239.1	235.9
C8	C7	C11	C10	50.9	56.8
C8	C7	C11	C12	175.5	176.8
C8	C7	C11	H2	293.6	296.9
C8	C7	N1	C13	207.8	218.8
C9	O1	C8	C7	60.0	61.1
O1	C8	C7	H6	239.7	240.1
O1	C8	C7	H7	120.3	119.9
H6	C8	C7	H7	240.6	239.9
C7	C3	C4	C5	182.0	180.1
C7	C3	C4	F2	2.5	359.7
C4	C3	C7	C2	178.3	180.0
C8	C7	C3	C11	120.9	118.3
C8	C7	C3	N1	247.3	240.6
C3	C7	C8	O1	186.3	184.9
C3	C7	C8	H6	306.6	304.8
C3	C7	C8	H7	66.0	64.9
C11	C7	C3	N1	126.4	122.2
C3	C7	C11	C10	172.0	174.5
C3	C7	C11	C12	296.6	294.4
C3	C7	C11	H2	54.7	54.5
C3	C7	N1	C13	90.5	100.6
C1	C2	C3	C7	179.3	180.0
C7	C3	C2	H4	359.3	359.9
C8	C7	C11	C3	238.9	242.4
C8	C7	C11	N1	114.0	122.8
C11	C7	C8	O1	307.5	302.5
C11	C7	C8	H6	67.8	62.5
C11	C7	C8	H7	187.2	182.6
C3	C7	C11	N1	235.1	240.4
C11	C7	C3	C2	118.9	121.7
C11	C7	N1	C13	326.0	341.1
C9	C10	C11	C7	305.5	303.3
C10	C11	C7	C12	235.3	240.1
C7	C11	C10	H8	185.6	183.4
C7	C11	C10	H9	65.4	63.2
C10	C11	C7	H2	117.3	119.9
C7	C11	C12	S1	302.2	289.8
C12	C11	C7	H2	242.0	239.9
C7	C11	C12	H10	62.9	49.5
C7	C11	C12	H11	181.5	170.1
N2	C13	N1	C7	184.5	182.0
C8	C7	N1	C3	117.3	118.2
C8	C7	N1	C11	241.9	237.7
N1	C7	C8	O1	68.4	66.7
N1	C7	C8	H6	188.7	186.6
N1	C7	C8	H7	308.1	306.7
C3	C7	N1	C11	124.5	119.6
N1	C7	C3	C2	352.5	359.5
N1	C7	C11	C10	296.8	294.1
N1	C7	C11	C12	61.5	54.0
N1	C7	C11	H2	179.5	174.1
S1	C13	N1	C7	4.5	2.5
C4	C5	C6	C1	0.3	360.0
C5	C6	C1	F1	180.2	180.1
C1	C6	C5	H5	180.4	180.0
C6	C1	C2	C3	358.5	360.0
C2	C1	C6	H3	180.0	180.0
C6	C1	C2	H4	178.5	180.0
C6	C5	C4	F2	178.5	180.3
C4	C5	C6	H5	180.0	180.0
C1	C6	C5	F1	179.8	179.9
C5	C6	C1	C2	0.9	0.0
C5	C6	C1	H3	180.9	180.0
C1	C6	F1	C5	180.2	180.1
F1	C6	C1	C2	180.6	179.9
F1	C6	C1	H3	0.6	359.9
F1	C6	C5	H5	0.6	0.1
C7	C8	O1	C9	60.0	61.1
C10	C9	O1	C14	118.0	120.0
O1	C9	C10	C11	59.6	57.3
C10	C9	O1	H1	236.9	240.0
O1	C9	C10	H8	179.5	177.2
O1	C9	C10	H9	299.7	297.4
O1	C9	C14	F3	290.7	295.0
C14	C9	O1	H1	118.9	119.9
O1	C9	C14	H14	50.7	55.0
O1	C9	C14	H15	170.7	175.0
C9	O1	C8	H6	299.7	301.2
C9	O1	C8	H7	180.3	181.1
C7	C11	C10	C9	305.5	303.3
O1	C9	C10	C14	245.5	240.0
C10	C9	O1	C8	296.4	298.8
O1	C9	C10	H1	124.2	120.0
C10	C9	C14	F3	172.5	175.0
C14	C9	C10	H1	238.7	240.0
C10	C9	C14	H14	292.5	295.1
C10	C9	C14	H15	52.5	55.0
C9	C10	C11	C12	181.4	183.3
C11	C10	C9	H8	240.1	240.1
C11	C10	C9	H9	119.9	119.9
C9	C10	C11	H2	62.7	63.3
H8	C10	C9	H9	239.9	239.8
O1	C9	C14	C10	118.2	120.0
C14	C9	O1	C8	178.4	178.8
O1	C9	C14	H1	239.7	240.0
C14	C9	C10	C11	174.1	177.3
C10	C9	C14	H1	121.5	120.0
C14	C9	C10	H8	294.0	297.2
C14	C9	C10	H9	54.1	57.4
F3	C14	C9	H14	240.0	240.0
F3	C14	C9	H15	120.0	120.0
H14	C14	C9	H15	240.1	240.0
N2	C13	S1	N1	180.0	180.5
S1	C13	N2	H12	0.0	0.0
S1	C13	N2	H13	180.0	180.0
C7	N1	C13	S1	4.5	2.5
C11	C12	S1	C13	27.4	47.9
C13	S1	C12	H10	266.7	288.2
C13	S1	C12	H11	148.2	167.5
N2	C13	N1	S1	180.0	179.4
N1	C13	N2	H12	180.0	180.5
N1	C13	N2	H13	0.0	0.5
N1	C13	S1	C12	359.3	343.5
O1	C8	C7	C3	186.3	184.9
O1	C8	C7	C11	307.5	302.5
O1	C8	C7	N1	68.4	66.7
C7	C8	O1	H6	120.3	120.0
C7	C8	O1	H7	239.7	240.0
C8	O1	C9	C10	296.4	298.8
C8	O1	C9	C14	178.4	178.8
C8	O1	C9	H1	59.5	58.8
H6	C8	O1	H7	119.4	120.1
C4	C3	C2	C1	0.9	0.0
C7	C3	C2	C1	179.3	180.0
C2	C1	C6	C5	0.9	0.0
C2	C1	C6	F1	180.6	179.9
C6	C1	C2	H3	180.0	180.0
C3	C2	C1	H4	180.0	179.9
C2	C3	C4	C5	0.4	0.0
C2	C3	C4	F2	180.9	179.7
C4	C3	C2	C7	181.6	180.0
C2	C3	C7	C11	118.9	121.7
C2	C3	C7	N1	352.5	359.5
C3	C2	C1	H3	178.5	180.0
C1	C2	C3	H4	180.0	180.1
C10	C11	C7	N1	296.8	294.1
C7	C11	C10	C12	124.2	120.0
C7	C11	C10	H2	242.8	240.0
C11	C10	C9	C14	174.1	177.3
C11	C10	C9	H1	295.4	297.3
C9	C10	C11	H8	119.9	119.9
C9	C10	C11	H9	240.1	240.1
C10	C11	C12	S1	65.8	49.7
C12	C11	C10	H2	118.7	120.0
C10	C11	C12	H10	186.5	169.4
C10	C11	C12	H11	305.1	290.1
H8	C10	C11	H9	120.2	120.2
C12	C11	C7	N1	61.5	54.0
C7	C11	C12	C10	236.4	240.1
C7	C11	C12	H2	117.8	120.1
C13	S1	C12	C11	27.4	47.9
C12	C11	C10	H8	61.4	63.4
C12	C11	C10	H9	301.3	303.2
C10	C11	C12	H2	241.4	240.0
S1	C12	C11	H10	239.3	240.3
S1	C12	C11	H11	120.7	119.7
H10	C12	C11	H11	241.4	239.4
C12	S1	C13	N1	359.3	343.5
S1	C12	C11	H2	184.4	169.7
C11	C12	S1	H10	120.7	119.7
C11	C12	S1	H11	239.3	240.3
H10	C12	S1	H11	118.6	120.7
F3	C14	C9	H1	51.0	55.0
C9	C14	F3	H14	120.0	120.0
C9	C14	F3	H15	239.9	239.9
H14	C14	F3	H15	119.9	119.9
H12	N2	C13	S1	0.0	0.0
H12	N2	C13	N1	180.0	180.5
C13	N2	H12	H13	180.0	180.0
H13	N2	C13	S1	180.0	180.0
H13	N2	C13	N1	0.0	0.5
C13	N2	H13	H12	180.0	180.0
O1	C9	H1	C10	236.9	240.0
O1	C9	H1	C14	115.5	120.0
H1	C9	O1	C8	59.5	58.8
C10	C9	H1	C14	238.6	240.0
H1	C9	C10	C11	295.4	297.3
H1	C9	C10	H8	55.3	57.2
H1	C9	C10	H9	175.4	177.4
H1	C9	C14	F3	51.0	55.0
H1	C9	C14	H14	171.1	175.0
H1	C9	C14	H15	291.0	295.0
H6	C8	C7	C3	306.6	304.8
H6	C8	C7	C11	67.8	62.5
H6	C8	C7	N1	188.7	186.6
C7	C8	H6	O1	238.2	240.2
C7	C8	H6	H7	119.1	120.1
O1	C8	H6	H7	240.9	239.9
H7	C8	C7	C3	66.0	64.9
H7	C8	C7	C11	187.2	182.6
H7	C8	C7	N1	308.1	306.7
C7	C8	H7	O1	121.9	119.8
C7	C8	H7	H6	240.9	239.9
O1	C8	H7	H6	119.1	120.1
H3	C1	C6	C5	180.9	180.0
H3	C1	C6	F1	0.6	359.9
C6	C1	H3	C2	180.0	180.0
H3	C1	C2	C3	178.5	180.0
H3	C1	C2	H4	358.5	0.1
C1	C2	H4	C3	180.0	179.9
H4	C2	C1	H3	358.5	0.1
H5	C5	C4	F2	358.5	0.3
C4	C5	H5	C6	180.0	180.0
H5	C5	C6	F1	0.6	0.1
H8	C10	C9	C14	294.0	297.2
C9	C10	H8	C11	240.5	240.4
H8	C10	C9	H1	55.3	57.2
C9	C10	H8	H9	120.2	120.2
H8	C10	C11	C12	61.4	63.4
C11	C10	H8	H9	239.7	239.8
H8	C10	C11	H2	302.8	303.4
H9	C10	C9	C14	54.1	57.4
C9	C10	H9	C11	119.5	119.6
H9	C10	C9	H1	175.4	177.4
C9	C10	H9	H8	239.8	239.8
H9	C10	C11	C12	301.3	303.2
C11	C10	H9	H8	120.2	120.2
H9	C10	C11	H2	182.6	183.2
H2	C11	C7	N1	179.5	174.1
C7	C11	H2	C10	118.8	119.9
C7	C11	H2	C12	240.0	239.8
C10	C11	H2	C12	121.2	119.9
H2	C11	C10	H8	302.8	303.4
H2	C11	C10	H9	182.6	183.2
H2	C11	C12	S1	184.4	169.7
H2	C11	C12	H10	305.1	289.4
H2	C11	C12	H11	63.7	50.0
C11	C12	H10	S1	235.6	241.3
H10	C12	C11	H2	305.1	289.4
C11	C12	H10	H11	117.8	120.6
S1	C12	H10	H11	242.2	239.3
C11	C12	H11	S1	124.4	118.7
H11	C12	C11	H2	63.7	50.0
C11	C12	H11	H10	242.2	239.4
S1	C12	H11	H10	117.8	120.7
C9	C14	H14	F3	239.7	240.0
H14	C14	C9	H1	171.1	175.0
C9	C14	H14	H15	119.9	120.0
F3	C14	H14	H15	240.2	240.1
C9	C14	H15	F3	120.3	120.0
H15	C14	C9	H1	291.0	295.0
C9	C14	H15	H14	240.2	240.0
F3	C14	H15	H14	119.8	120.0