PDB Chemical Component 3VO
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 3VO
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N2 |
C11 |
1.378 |
1.375 |
| C6 |
C5 |
1.383 |
1.383 |
| C6 |
C13 |
1.417 |
1.385 |
| C5 |
C4 |
1.407 |
1.382 |
| N1 |
C11 |
1.328 |
1.283 |
| N1 |
C8 |
1.509 |
1.445 |
| F2 |
C13 |
1.324 |
1.350 |
| C11 |
S1 |
1.797 |
1.759 |
| C13 |
C12 |
1.403 |
1.384 |
| C3 |
O1 |
1.371 |
1.429 |
| C3 |
C8 |
1.572 |
1.532 |
| C4 |
C8 |
1.533 |
1.507 |
| C4 |
C7 |
1.463 |
1.385 |
| O1 |
C1 |
1.471 |
1.430 |
| C8 |
C9 |
1.590 |
1.525 |
| C12 |
C7 |
1.392 |
1.384 |
| C7 |
F1 |
1.330 |
1.351 |
| S1 |
C10 |
1.829 |
1.813 |
| C1 |
C2 |
1.564 |
1.531 |
| C9 |
C2 |
1.557 |
1.531 |
| C9 |
C10 |
1.554 |
1.532 |
| N2 |
H1 |
1.000 |
0.971 |
| N2 |
H2 |
1.000 |
0.971 |
| C6 |
H3 |
1.080 |
1.080 |
| C9 |
H4 |
1.100 |
1.090 |
| C1 |
H5 |
1.100 |
1.090 |
| C1 |
H6 |
1.100 |
1.090 |
| C2 |
H7 |
1.100 |
1.091 |
| C2 |
H8 |
1.100 |
1.090 |
| C3 |
H9 |
1.100 |
1.090 |
| C3 |
H10 |
1.100 |
1.090 |
| C5 |
H11 |
1.080 |
1.080 |
| C10 |
H12 |
1.100 |
1.090 |
| C10 |
H13 |
1.100 |
1.091 |
| C12 |
H14 |
1.080 |
1.080 |
Bond Angles for 3VO
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N2 |
C11 |
S1 |
112.2 |
118.1 |
| C11 |
N2 |
H1 |
120.0 |
120.0 |
| C11 |
N2 |
H2 |
120.0 |
120.0 |
| C13 |
C6 |
C5 |
118.8 |
120.0 |
| C5 |
C6 |
H3 |
120.6 |
120.0 |
| C6 |
C5 |
H11 |
118.6 |
120.0 |
| C6 |
C13 |
C12 |
122.3 |
120.0 |
| C13 |
C6 |
H3 |
120.6 |
120.0 |
| C13 |
C12 |
H14 |
121.2 |
120.1 |
| C7 |
C4 |
C8 |
121.2 |
120.0 |
| C4 |
C8 |
C9 |
112.9 |
108.2 |
| C4 |
C7 |
F1 |
122.8 |
120.0 |
| O1 |
C1 |
C2 |
112.6 |
109.4 |
| O1 |
C1 |
H5 |
108.7 |
109.4 |
| O1 |
C1 |
H6 |
108.7 |
109.5 |
| C8 |
C9 |
C2 |
113.5 |
109.4 |
| C8 |
C9 |
C10 |
111.2 |
109.5 |
| C8 |
C9 |
H4 |
104.7 |
109.5 |
| C12 |
C7 |
F1 |
114.4 |
120.0 |
| S1 |
C10 |
H12 |
108.7 |
109.7 |
| S1 |
C10 |
H13 |
108.7 |
109.8 |
| C9 |
C2 |
C1 |
107.7 |
109.1 |
| C2 |
C1 |
H5 |
108.7 |
109.5 |
| C2 |
C1 |
H6 |
108.7 |
109.5 |
| C1 |
C2 |
H7 |
109.9 |
109.5 |
| C1 |
C2 |
H8 |
109.9 |
109.5 |
| C2 |
C9 |
C10 |
116.0 |
109.4 |
| C2 |
C9 |
H4 |
105.1 |
109.5 |
| C9 |
C2 |
H7 |
109.9 |
109.5 |
| C9 |
C2 |
H8 |
109.9 |
109.6 |
| C10 |
C9 |
H4 |
105.1 |
109.5 |
| C9 |
C10 |
H12 |
108.7 |
109.8 |
| C9 |
C10 |
H13 |
108.7 |
109.7 |
| H1 |
N2 |
H2 |
120.0 |
120.0 |
| H5 |
C1 |
H6 |
109.5 |
109.5 |
| H7 |
C2 |
H8 |
109.5 |
109.6 |
| H9 |
C3 |
H10 |
109.5 |
109.6 |
| H12 |
C10 |
H13 |
109.5 |
109.7 |
Torsion Angles for 3VO
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H1 |
N2 |
C11 |
H2 |
180.0 |
180.1 |
| C5 |
C6 |
C13 |
C12 |
0.1 |
359.7 |
| C13 |
C6 |
C5 |
H3 |
180.0 |
179.9 |
| C5 |
C6 |
C13 |
H3 |
180.0 |
180.1 |
| C13 |
C6 |
C5 |
H11 |
179.9 |
180.0 |
| C6 |
C13 |
C12 |
H14 |
182.1 |
180.0 |
| C5 |
C4 |
C7 |
F1 |
177.5 |
179.7 |
| N1 |
C11 |
N2 |
H1 |
0.0 |
180.7 |
| N1 |
C11 |
N2 |
H2 |
180.0 |
0.7 |
| N1 |
C8 |
C9 |
H4 |
177.3 |
174.3 |
| F2 |
C13 |
C6 |
H3 |
359.3 |
360.0 |
| F2 |
C13 |
C12 |
H14 |
2.8 |
359.7 |
| S1 |
C11 |
N2 |
H1 |
178.9 |
0.1 |
| S1 |
C11 |
N2 |
H2 |
358.9 |
180.0 |
| C11 |
S1 |
C10 |
H12 |
149.0 |
288.2 |
| C11 |
S1 |
C10 |
H13 |
268.1 |
167.6 |
| C12 |
C13 |
C6 |
C5 |
0.1 |
359.7 |
| C12 |
C13 |
C6 |
H3 |
180.0 |
179.7 |
| C13 |
C12 |
C7 |
F1 |
181.9 |
180.0 |
| C3 |
O1 |
C1 |
H5 |
58.5 |
58.8 |
| C3 |
O1 |
C1 |
H6 |
177.6 |
178.8 |
| C3 |
C8 |
C9 |
C10 |
181.7 |
176.8 |
| C3 |
C8 |
C9 |
H4 |
294.7 |
296.9 |
| C8 |
C4 |
C7 |
F1 |
354.5 |
0.0 |
| C4 |
C8 |
C9 |
C2 |
168.3 |
174.4 |
| C4 |
C8 |
C9 |
C10 |
301.3 |
294.3 |
| C4 |
C8 |
C9 |
H4 |
54.3 |
54.4 |
| C7 |
C4 |
C8 |
C9 |
302.2 |
300.0 |
| C12 |
C7 |
C4 |
F1 |
186.6 |
179.9 |
| C9 |
C2 |
C1 |
O1 |
52.0 |
57.2 |
| C2 |
C1 |
O1 |
H5 |
239.5 |
240.0 |
| C2 |
C1 |
O1 |
H6 |
120.5 |
120.1 |
| O1 |
C1 |
C2 |
H7 |
171.7 |
297.4 |
| O1 |
C1 |
C2 |
H8 |
292.3 |
177.2 |
| H5 |
C1 |
O1 |
H6 |
240.9 |
240.0 |
| C8 |
C9 |
C2 |
C1 |
312.0 |
303.3 |
| C2 |
C9 |
C8 |
C10 |
227.0 |
240.1 |
| C2 |
C9 |
C8 |
H4 |
114.0 |
120.0 |
| C8 |
C9 |
C2 |
H7 |
192.3 |
63.1 |
| C8 |
C9 |
C2 |
H8 |
71.7 |
183.4 |
| C10 |
C9 |
C8 |
H4 |
247.0 |
239.9 |
| C8 |
C9 |
C10 |
H12 |
179.7 |
49.5 |
| C8 |
C9 |
C10 |
H13 |
60.6 |
170.2 |
| C4 |
C7 |
C12 |
F1 |
173.9 |
180.1 |
| F1 |
C7 |
C4 |
C8 |
354.5 |
0.0 |
| N2 |
C11 |
S1 |
C10 |
178.2 |
164.1 |
| S1 |
C10 |
C9 |
H4 |
187.3 |
169.8 |
| C9 |
C10 |
S1 |
H12 |
239.5 |
119.7 |
| C9 |
C10 |
S1 |
H13 |
120.4 |
240.3 |
| H12 |
C10 |
S1 |
H13 |
240.9 |
120.6 |
| O1 |
C1 |
C2 |
H5 |
120.5 |
119.9 |
| O1 |
C1 |
C2 |
H6 |
239.6 |
240.0 |
| C1 |
C2 |
C9 |
C10 |
181.4 |
183.3 |
| C1 |
C2 |
C9 |
H4 |
65.8 |
63.3 |
| C9 |
C2 |
C1 |
H7 |
240.3 |
119.8 |
| C9 |
C2 |
C1 |
H8 |
119.7 |
240.0 |
| H5 |
C1 |
C2 |
H6 |
119.1 |
120.1 |
| H7 |
C2 |
C1 |
H8 |
239.4 |
120.2 |
| O1 |
C1 |
C2 |
C9 |
52.0 |
57.2 |
| C8 |
C9 |
C2 |
C10 |
130.6 |
120.0 |
| C8 |
C9 |
C2 |
H4 |
246.1 |
240.0 |
| C9 |
C2 |
C1 |
H5 |
291.5 |
297.3 |
| C9 |
C2 |
C1 |
H6 |
172.4 |
177.2 |
| C1 |
C2 |
C9 |
H7 |
119.7 |
240.2 |
| C1 |
C2 |
C9 |
H8 |
240.3 |
119.9 |
| C10 |
C9 |
C2 |
H4 |
115.6 |
120.0 |
| C2 |
C9 |
C10 |
H12 |
311.3 |
169.4 |
| C2 |
C9 |
C10 |
H13 |
192.2 |
290.1 |
| H7 |
C2 |
C9 |
H8 |
120.6 |
239.7 |
| C8 |
C9 |
C10 |
C2 |
228.3 |
240.1 |
| C8 |
C9 |
C10 |
H4 |
112.8 |
120.1 |
| S1 |
C10 |
C9 |
H12 |
120.5 |
240.3 |
| S1 |
C10 |
C9 |
H13 |
239.6 |
119.7 |
| C10 |
C9 |
C2 |
C1 |
181.4 |
183.3 |
| C2 |
C9 |
C10 |
H4 |
244.4 |
240.0 |
| C10 |
C9 |
C2 |
H7 |
61.7 |
303.1 |
| C10 |
C9 |
C2 |
H8 |
301.1 |
63.4 |
| H12 |
C10 |
C9 |
H13 |
119.1 |
239.4 |
| H1 |
N2 |
C11 |
S1 |
178.9 |
0.1 |
| C11 |
N2 |
H1 |
H2 |
180.0 |
179.9 |
| H2 |
N2 |
C11 |
S1 |
358.9 |
180.0 |
| C11 |
N2 |
H2 |
H1 |
180.0 |
180.1 |
| C13 |
C6 |
H3 |
C5 |
180.0 |
180.1 |
| H3 |
C6 |
C5 |
H11 |
359.9 |
0.1 |
| H3 |
C6 |
C13 |
C12 |
180.0 |
179.7 |
| C8 |
C9 |
H4 |
C2 |
119.9 |
119.9 |
| C8 |
C9 |
H4 |
C10 |
242.8 |
239.9 |
| H4 |
C9 |
C2 |
C1 |
65.8 |
63.3 |
| C2 |
C9 |
H4 |
C10 |
122.9 |
120.0 |
| H4 |
C9 |
C2 |
H7 |
306.1 |
183.1 |
| H4 |
C9 |
C2 |
H8 |
185.5 |
303.4 |
| H4 |
C9 |
C10 |
H12 |
66.9 |
289.4 |
| H4 |
C9 |
C10 |
H13 |
307.8 |
50.1 |
| O1 |
C1 |
H5 |
C2 |
237.1 |
240.1 |
| O1 |
C1 |
H5 |
H6 |
118.6 |
120.0 |
| C2 |
C1 |
H5 |
H6 |
241.4 |
239.9 |
| H5 |
C1 |
C2 |
H7 |
51.2 |
177.5 |
| H5 |
C1 |
C2 |
H8 |
171.8 |
57.3 |
| O1 |
C1 |
H6 |
C2 |
122.9 |
120.0 |
| O1 |
C1 |
H6 |
H5 |
241.4 |
240.1 |
| C2 |
C1 |
H6 |
H5 |
118.6 |
120.1 |
| H6 |
C1 |
C2 |
H7 |
292.1 |
57.4 |
| H6 |
C1 |
C2 |
H8 |
52.7 |
297.2 |
| C9 |
C2 |
H7 |
C1 |
118.4 |
240.4 |
| H7 |
C2 |
C1 |
H5 |
51.2 |
177.5 |
| H7 |
C2 |
C1 |
H6 |
292.1 |
57.4 |
| C1 |
C2 |
H7 |
H8 |
120.8 |
239.8 |
| H7 |
C2 |
C9 |
C10 |
61.7 |
303.1 |
| H7 |
C2 |
C9 |
H4 |
306.1 |
183.1 |
| C9 |
C2 |
H7 |
H8 |
239.2 |
120.3 |
| C9 |
C2 |
H8 |
C1 |
241.6 |
119.7 |
| H8 |
C2 |
C1 |
H5 |
171.8 |
57.3 |
| H8 |
C2 |
C1 |
H6 |
52.7 |
297.2 |
| C1 |
C2 |
H8 |
H7 |
239.2 |
120.1 |
| H8 |
C2 |
C9 |
C10 |
301.1 |
63.4 |
| H8 |
C2 |
C9 |
H4 |
185.5 |
303.4 |
| C9 |
C2 |
H8 |
H7 |
120.8 |
239.8 |
| H11 |
C5 |
C6 |
H3 |
359.9 |
0.1 |
| S1 |
C10 |
H12 |
H13 |
118.6 |
239.3 |
| H12 |
C10 |
C9 |
H4 |
66.9 |
289.4 |
| C9 |
C10 |
H12 |
H13 |
241.4 |
120.7 |
| S1 |
C10 |
H13 |
H12 |
241.4 |
120.6 |
| H13 |
C10 |
C9 |
H4 |
307.8 |
50.1 |
| C9 |
C10 |
H13 |
H12 |
118.7 |
239.3 |
| H14 |
C12 |
C7 |
F1 |
1.9 |
0.2 |