PDB Chemical Component 3U1
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 3U1
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N13 |
N14 |
1.346 |
1.399 |
N13 |
C12 |
1.379 |
1.372 |
N14 |
C15 |
1.349 |
1.311 |
C12 |
C11 |
1.417 |
1.394 |
C12 |
C31 |
1.380 |
1.407 |
C11 |
C10 |
1.396 |
1.363 |
C17 |
N18 |
1.354 |
1.320 |
C17 |
C16 |
1.400 |
1.395 |
C15 |
C31 |
1.439 |
1.468 |
C15 |
C16 |
1.403 |
1.481 |
N18 |
C19 |
1.352 |
1.321 |
C31 |
C32 |
1.442 |
1.394 |
C16 |
N30 |
1.351 |
1.331 |
C10 |
C09 |
1.415 |
1.400 |
C19 |
C20 |
1.398 |
1.391 |
C32 |
C09 |
1.422 |
1.387 |
N30 |
C20 |
1.357 |
1.324 |
C09 |
C08 |
1.429 |
1.484 |
C20 |
O21 |
1.432 |
1.357 |
F07 |
C06 |
1.344 |
1.351 |
C08 |
C06 |
1.414 |
1.395 |
C08 |
C02 |
1.405 |
1.396 |
C06 |
C05 |
1.403 |
1.383 |
O21 |
C22 |
1.449 |
1.429 |
F01 |
C02 |
1.338 |
1.351 |
C02 |
C03 |
1.399 |
1.382 |
C22 |
C23 |
1.539 |
1.532 |
C22 |
C27 |
1.476 |
1.533 |
C05 |
C04 |
1.396 |
1.383 |
C23 |
N24 |
1.483 |
1.468 |
C03 |
C04 |
1.397 |
1.383 |
C27 |
C29 |
1.520 |
1.528 |
C27 |
C28 |
1.519 |
1.527 |
C27 |
C26 |
1.483 |
1.532 |
C29 |
C28 |
1.520 |
1.530 |
N24 |
C25 |
1.481 |
1.469 |
C26 |
C25 |
1.530 |
1.533 |
C03 |
H1 |
1.080 |
1.080 |
C04 |
H2 |
1.080 |
1.080 |
C05 |
H3 |
1.080 |
1.080 |
C10 |
H4 |
1.080 |
1.080 |
C11 |
H5 |
1.080 |
1.080 |
N13 |
H6 |
1.000 |
0.970 |
C17 |
H7 |
1.080 |
1.080 |
C19 |
H8 |
1.080 |
1.080 |
C22 |
H9 |
1.100 |
1.090 |
C23 |
H10 |
1.100 |
1.090 |
C23 |
H11 |
1.100 |
1.090 |
N24 |
H12 |
1.000 |
1.009 |
C25 |
H14 |
1.100 |
1.090 |
C25 |
H15 |
1.100 |
1.091 |
C26 |
H16 |
1.100 |
1.090 |
C26 |
H17 |
1.100 |
1.090 |
C28 |
H18 |
1.100 |
1.090 |
C28 |
H19 |
1.100 |
1.090 |
C29 |
H20 |
1.100 |
1.090 |
C29 |
H21 |
1.100 |
1.091 |
C32 |
H22 |
1.080 |
1.080 |
Bond Angles for 3U1
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
N13 |
N14 |
C15 |
110.1 |
110.0 |
N14 |
N13 |
H6 |
125.7 |
125.3 |
N13 |
C12 |
C31 |
108.4 |
106.9 |
N14 |
C15 |
C31 |
107.1 |
107.6 |
N14 |
C15 |
C16 |
123.8 |
126.2 |
C12 |
C11 |
H5 |
119.9 |
119.9 |
C12 |
C31 |
C15 |
105.8 |
106.3 |
C12 |
C31 |
C32 |
119.5 |
119.9 |
C11 |
C10 |
H4 |
119.3 |
119.7 |
C17 |
N18 |
C19 |
118.9 |
120.2 |
N18 |
C17 |
H7 |
119.4 |
120.1 |
C17 |
C16 |
N30 |
119.2 |
119.8 |
C16 |
C15 |
C31 |
129.1 |
126.2 |
C15 |
C31 |
C32 |
134.7 |
133.8 |
C15 |
C16 |
N30 |
120.6 |
120.1 |
N18 |
C19 |
C20 |
120.5 |
120.2 |
N18 |
C19 |
H8 |
119.8 |
119.9 |
C31 |
C32 |
H22 |
119.7 |
120.4 |
C16 |
N30 |
C20 |
120.1 |
119.8 |
C19 |
C20 |
O21 |
118.1 |
120.0 |
C20 |
C19 |
H8 |
119.7 |
120.0 |
C20 |
O21 |
C22 |
115.7 |
117.0 |
C06 |
C05 |
H3 |
120.0 |
120.0 |
O21 |
C22 |
C23 |
112.0 |
109.6 |
O21 |
C22 |
C27 |
105.2 |
109.6 |
O21 |
C22 |
H9 |
109.6 |
109.6 |
F01 |
C02 |
C03 |
118.1 |
120.1 |
C02 |
C03 |
C04 |
120.4 |
120.2 |
C02 |
C03 |
H1 |
119.8 |
119.9 |
C23 |
C22 |
C27 |
112.5 |
108.6 |
C22 |
C23 |
N24 |
114.9 |
109.5 |
C23 |
C22 |
H9 |
108.4 |
109.6 |
C22 |
C23 |
H10 |
108.1 |
109.5 |
C22 |
C23 |
H11 |
108.1 |
109.5 |
C22 |
C27 |
C29 |
127.3 |
117.8 |
C22 |
C27 |
C28 |
122.3 |
117.8 |
C22 |
C27 |
C26 |
112.0 |
114.8 |
C27 |
C22 |
H9 |
109.2 |
109.7 |
C05 |
C04 |
H2 |
120.3 |
119.9 |
C23 |
N24 |
C25 |
114.0 |
111.6 |
N24 |
C23 |
H10 |
108.1 |
109.5 |
N24 |
C23 |
H11 |
108.1 |
109.5 |
C23 |
N24 |
H12 |
108.3 |
111.0 |
C04 |
C03 |
H1 |
119.8 |
119.9 |
C03 |
C04 |
H2 |
120.3 |
119.9 |
C28 |
C27 |
C29 |
60.0 |
60.1 |
C27 |
C29 |
C28 |
60.0 |
59.9 |
C27 |
C29 |
H20 |
120.0 |
117.5 |
C27 |
C29 |
H21 |
120.0 |
117.5 |
C27 |
C28 |
H18 |
120.0 |
117.5 |
C27 |
C28 |
H19 |
120.0 |
117.5 |
C27 |
C26 |
H16 |
109.3 |
109.6 |
C27 |
C26 |
H17 |
109.3 |
109.7 |
C29 |
C28 |
H18 |
120.0 |
117.5 |
C29 |
C28 |
H19 |
120.0 |
117.5 |
C25 |
N24 |
H12 |
108.3 |
111.0 |
N24 |
C25 |
H14 |
109.0 |
109.5 |
N24 |
C25 |
H15 |
109.0 |
109.5 |
C26 |
C25 |
H14 |
109.1 |
109.5 |
C26 |
C25 |
H15 |
109.0 |
109.5 |
H10 |
C23 |
H11 |
109.5 |
109.5 |
H14 |
C25 |
H15 |
109.5 |
109.5 |
H16 |
C26 |
H17 |
109.4 |
109.6 |
H18 |
C28 |
H19 |
109.5 |
115.5 |
H20 |
C29 |
H21 |
109.5 |
115.5 |
Torsion Angles for 3U1
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
N14 |
N13 |
C12 |
C31 |
359.4 |
360.0 |
N13 |
N14 |
C15 |
C31 |
0.5 |
0.0 |
N13 |
N14 |
C15 |
C16 |
178.3 |
180.0 |
N13 |
C12 |
C11 |
H5 |
358.8 |
360.0 |
N13 |
C12 |
C31 |
C15 |
0.9 |
0.0 |
N13 |
C12 |
C31 |
C32 |
180.6 |
179.8 |
C15 |
N14 |
N13 |
H6 |
180.0 |
180.0 |
C12 |
C31 |
C15 |
N14 |
359.1 |
360.0 |
C16 |
C15 |
N14 |
C31 |
177.8 |
180.0 |
N14 |
C15 |
C31 |
C32 |
179.5 |
180.3 |
N14 |
C15 |
C16 |
N30 |
189.4 |
155.0 |
C12 |
C11 |
C10 |
H4 |
180.3 |
180.0 |
N14 |
C15 |
C31 |
C12 |
359.1 |
360.0 |
C31 |
C12 |
C11 |
H5 |
180.1 |
180.0 |
C16 |
C15 |
C31 |
C12 |
181.5 |
180.0 |
C15 |
C31 |
C12 |
C32 |
180.3 |
180.3 |
C12 |
C31 |
C32 |
H22 |
180.3 |
180.0 |
N18 |
C17 |
C16 |
N30 |
358.4 |
0.2 |
C17 |
N18 |
C19 |
C20 |
360.0 |
359.9 |
C17 |
N18 |
C19 |
H8 |
179.9 |
180.0 |
C17 |
C16 |
C15 |
C31 |
183.8 |
155.2 |
C15 |
C16 |
C17 |
N30 |
182.8 |
179.8 |
C17 |
C16 |
N30 |
C20 |
1.3 |
359.6 |
N14 |
C15 |
C31 |
C16 |
177.6 |
180.0 |
C12 |
C31 |
C15 |
C32 |
179.7 |
179.7 |
C31 |
C15 |
C16 |
N30 |
6.7 |
335.0 |
C15 |
C31 |
C32 |
H22 |
359.9 |
359.7 |
N14 |
C15 |
C16 |
C31 |
182.7 |
180.0 |
C12 |
C31 |
C15 |
C16 |
181.5 |
180.0 |
C17 |
C16 |
C15 |
N30 |
177.1 |
180.2 |
C16 |
C15 |
C31 |
C32 |
1.8 |
0.3 |
C15 |
C16 |
N30 |
C20 |
178.5 |
179.8 |
C19 |
N18 |
C17 |
H7 |
180.9 |
180.1 |
N18 |
C19 |
C20 |
O21 |
179.4 |
180.0 |
C20 |
C19 |
N18 |
H8 |
180.0 |
179.9 |
C12 |
C31 |
C32 |
C15 |
180.4 |
180.4 |
N30 |
C16 |
C15 |
C31 |
6.7 |
335.0 |
N18 |
C19 |
C20 |
H8 |
180.0 |
180.1 |
C16 |
N30 |
C20 |
C19 |
359.5 |
0.4 |
C19 |
C20 |
O21 |
C22 |
180.3 |
180.0 |
N30 |
C20 |
C19 |
H8 |
179.8 |
179.8 |
C16 |
N30 |
C20 |
O21 |
180.0 |
180.2 |
O21 |
C20 |
C19 |
H8 |
359.4 |
360.0 |
C20 |
O21 |
C22 |
C23 |
101.7 |
90.0 |
C20 |
O21 |
C22 |
C27 |
224.2 |
209.1 |
C20 |
O21 |
C22 |
H9 |
341.4 |
329.6 |
F07 |
C06 |
C05 |
H3 |
0.1 |
0.0 |
C08 |
C06 |
C05 |
H3 |
179.7 |
179.7 |
C08 |
C02 |
C03 |
H1 |
180.5 |
180.3 |
C06 |
C05 |
C04 |
H2 |
180.1 |
180.0 |
C23 |
C22 |
O21 |
C27 |
237.5 |
240.9 |
O21 |
C22 |
C23 |
N24 |
74.5 |
175.3 |
C23 |
C22 |
O21 |
H9 |
120.3 |
120.4 |
O21 |
C22 |
C23 |
H10 |
195.3 |
295.3 |
O21 |
C22 |
C23 |
H11 |
313.7 |
55.3 |
O21 |
C22 |
C27 |
C29 |
73.4 |
334.3 |
O21 |
C22 |
C27 |
C28 |
148.3 |
43.3 |
O21 |
C22 |
C27 |
C26 |
289.6 |
188.8 |
C27 |
C22 |
O21 |
H9 |
242.8 |
239.5 |
F01 |
C02 |
C03 |
C04 |
179.8 |
180.0 |
F01 |
C02 |
C03 |
H1 |
359.8 |
360.0 |
C04 |
C03 |
C02 |
H1 |
180.0 |
180.0 |
C02 |
C03 |
C04 |
H2 |
179.8 |
180.0 |
O21 |
C22 |
C23 |
C27 |
118.3 |
119.7 |
O21 |
C22 |
C23 |
H9 |
239.0 |
239.6 |
C23 |
C22 |
C27 |
C29 |
195.6 |
94.0 |
C23 |
C22 |
C27 |
C28 |
270.5 |
163.0 |
C23 |
C22 |
C27 |
C26 |
51.8 |
308.6 |
C27 |
C22 |
C23 |
H9 |
120.8 |
119.9 |
C22 |
C23 |
N24 |
C25 |
43.6 |
295.1 |
N24 |
C23 |
C22 |
H10 |
239.2 |
240.0 |
N24 |
C23 |
C22 |
H11 |
120.8 |
120.0 |
C22 |
C23 |
N24 |
H12 |
164.2 |
59.5 |
H10 |
C23 |
C22 |
H11 |
241.6 |
240.0 |
O21 |
C22 |
C27 |
C23 |
237.8 |
240.3 |
O21 |
C22 |
C27 |
H9 |
117.5 |
120.4 |
C27 |
C22 |
C23 |
N24 |
316.2 |
55.6 |
C23 |
C22 |
C27 |
H9 |
239.7 |
240.2 |
C27 |
C22 |
C23 |
H10 |
77.0 |
175.6 |
C27 |
C22 |
C23 |
H11 |
195.4 |
295.6 |
C28 |
C27 |
C22 |
C29 |
74.8 |
69.0 |
C22 |
C27 |
C29 |
C28 |
109.7 |
107.8 |
C22 |
C27 |
C29 |
H20 |
219.1 |
215.3 |
C22 |
C27 |
C29 |
H21 |
0.2 |
0.4 |
C22 |
C27 |
C28 |
H18 |
352.0 |
359.7 |
C22 |
C27 |
C28 |
H19 |
133.0 |
144.7 |
C22 |
C27 |
C26 |
H16 |
60.9 |
291.7 |
C22 |
C27 |
C26 |
H17 |
180.6 |
171.2 |
C05 |
C04 |
C03 |
H1 |
179.8 |
180.0 |
C03 |
C04 |
C05 |
H2 |
180.0 |
179.9 |
N24 |
C23 |
C22 |
C27 |
316.2 |
55.6 |
N24 |
C23 |
C22 |
H9 |
195.4 |
295.7 |
C22 |
C23 |
N24 |
H10 |
120.8 |
120.0 |
C22 |
C23 |
N24 |
H11 |
239.2 |
240.0 |
C25 |
N24 |
C23 |
H12 |
239.4 |
235.6 |
C23 |
N24 |
C25 |
H14 |
70.1 |
184.8 |
C23 |
N24 |
C25 |
H15 |
189.6 |
304.9 |
H10 |
C23 |
N24 |
H11 |
118.4 |
120.0 |
C02 |
C03 |
C04 |
H1 |
180.0 |
180.0 |
C05 |
C04 |
C03 |
H2 |
180.0 |
180.1 |
C22 |
C27 |
C29 |
C26 |
216.1 |
215.6 |
C29 |
C27 |
C22 |
H9 |
315.9 |
213.9 |
C29 |
C27 |
C28 |
H18 |
109.5 |
107.5 |
C29 |
C27 |
C28 |
H19 |
250.5 |
252.5 |
C29 |
C27 |
C26 |
H16 |
271.2 |
146.2 |
C29 |
C27 |
C26 |
H17 |
30.9 |
25.8 |
C27 |
C29 |
C28 |
H18 |
250.5 |
252.5 |
C27 |
C29 |
C28 |
H19 |
109.5 |
107.5 |
H20 |
C29 |
C27 |
H21 |
219.0 |
214.9 |
C22 |
C27 |
C28 |
C29 |
242.5 |
252.3 |
C22 |
C27 |
C28 |
C26 |
140.5 |
144.5 |
C28 |
C27 |
C22 |
H9 |
30.8 |
282.8 |
C28 |
C27 |
C29 |
C28 |
-0.0 |
-0.0 |
C28 |
C27 |
C29 |
H20 |
109.5 |
107.5 |
C28 |
C27 |
C29 |
H21 |
250.5 |
252.6 |
C28 |
C27 |
C26 |
H16 |
205.5 |
77.2 |
C28 |
C27 |
C26 |
H17 |
325.2 |
316.8 |
C29 |
C28 |
C27 |
H18 |
250.5 |
252.5 |
C29 |
C28 |
C27 |
H19 |
109.5 |
107.5 |
H18 |
C28 |
C27 |
H19 |
218.9 |
215.0 |
C22 |
C27 |
C26 |
C29 |
149.7 |
145.4 |
C22 |
C27 |
C26 |
C28 |
215.4 |
214.4 |
C26 |
C27 |
C22 |
H9 |
172.1 |
68.4 |
C27 |
C26 |
C25 |
H14 |
297.6 |
184.4 |
C27 |
C26 |
C25 |
H15 |
178.1 |
64.4 |
H16 |
C26 |
C27 |
H17 |
240.3 |
120.4 |
C27 |
C29 |
C28 |
H20 |
109.5 |
107.5 |
C27 |
C29 |
C28 |
H21 |
250.6 |
252.5 |
C27 |
C28 |
C29 |
H18 |
109.5 |
107.5 |
C27 |
C28 |
C29 |
H19 |
250.5 |
252.5 |
H18 |
C28 |
C29 |
H19 |
141.0 |
145.0 |
C25 |
N24 |
C23 |
H10 |
282.8 |
175.2 |
C25 |
N24 |
C23 |
H11 |
164.3 |
55.1 |
C23 |
N24 |
C25 |
H12 |
120.6 |
124.4 |
C26 |
C25 |
N24 |
H14 |
239.7 |
240.0 |
C26 |
C25 |
N24 |
H15 |
120.2 |
120.0 |
H14 |
C25 |
N24 |
H15 |
240.5 |
240.0 |
C22 |
C27 |
C26 |
C25 |
300.8 |
51.4 |
C26 |
C25 |
N24 |
H12 |
189.2 |
300.5 |
N24 |
C25 |
C26 |
H14 |
120.3 |
120.0 |
N24 |
C25 |
C26 |
H15 |
239.7 |
240.0 |
H14 |
C25 |
C26 |
H15 |
119.5 |
120.0 |
C02 |
C03 |
H1 |
C04 |
180.0 |
180.0 |
H1 |
C03 |
C04 |
H2 |
359.8 |
359.9 |
H2 |
C04 |
C03 |
H1 |
359.8 |
359.9 |
H3 |
C05 |
C04 |
H2 |
0.1 |
0.1 |
H5 |
C11 |
C10 |
H4 |
0.4 |
0.0 |
H6 |
N13 |
N14 |
C15 |
180.0 |
180.0 |
H6 |
N13 |
C12 |
C31 |
179.4 |
179.9 |
H7 |
C17 |
N18 |
C19 |
180.9 |
180.1 |
H7 |
C17 |
C16 |
N30 |
178.4 |
180.2 |
N18 |
C19 |
H8 |
C20 |
180.0 |
179.9 |
H8 |
C19 |
C20 |
O21 |
359.4 |
360.0 |
O21 |
C22 |
H9 |
C23 |
122.5 |
120.4 |
O21 |
C22 |
H9 |
C27 |
245.2 |
239.6 |
C23 |
C22 |
H9 |
C27 |
122.8 |
119.2 |
H9 |
C22 |
C23 |
N24 |
195.4 |
295.7 |
H9 |
C22 |
C23 |
H10 |
316.2 |
55.7 |
H9 |
C22 |
C23 |
H11 |
74.7 |
175.7 |
H9 |
C22 |
C27 |
C29 |
315.9 |
213.9 |
H9 |
C22 |
C27 |
C28 |
30.8 |
282.8 |
H9 |
C22 |
C27 |
C26 |
172.1 |
68.4 |
H10 |
C23 |
C22 |
C27 |
77.0 |
175.6 |
C22 |
C23 |
H10 |
N24 |
235.0 |
240.0 |
H10 |
C23 |
C22 |
H9 |
316.2 |
55.7 |
C22 |
C23 |
H10 |
H11 |
117.5 |
120.0 |
H10 |
C23 |
N24 |
C25 |
282.8 |
175.2 |
N24 |
C23 |
H10 |
H11 |
242.5 |
240.0 |
H10 |
C23 |
N24 |
H12 |
43.4 |
299.5 |
H11 |
C23 |
C22 |
C27 |
195.4 |
295.6 |
C22 |
C23 |
H11 |
N24 |
125.0 |
120.0 |
H11 |
C23 |
C22 |
H9 |
74.7 |
175.7 |
C22 |
C23 |
H11 |
H10 |
242.5 |
240.0 |
H11 |
C23 |
N24 |
C25 |
164.3 |
55.1 |
N24 |
C23 |
H11 |
H10 |
117.5 |
120.0 |
H11 |
C23 |
N24 |
H12 |
285.0 |
179.5 |
C23 |
N24 |
H12 |
C25 |
235.9 |
235.3 |
H12 |
N24 |
C23 |
H10 |
43.4 |
299.5 |
H12 |
N24 |
C23 |
H11 |
285.0 |
179.5 |
H12 |
N24 |
C25 |
H14 |
309.5 |
60.5 |
H12 |
N24 |
C25 |
H15 |
69.0 |
180.5 |
H14 |
C25 |
N24 |
H12 |
309.5 |
60.5 |
N24 |
C25 |
H14 |
H15 |
119.2 |
120.0 |
C26 |
C25 |
H14 |
H15 |
240.8 |
240.0 |
H15 |
C25 |
N24 |
H12 |
69.0 |
180.5 |
N24 |
C25 |
H15 |
H14 |
240.8 |
240.0 |
C26 |
C25 |
H15 |
H14 |
119.2 |
120.0 |
C27 |
C26 |
H16 |
H17 |
119.6 |
239.5 |
H16 |
C26 |
C25 |
H14 |
177.4 |
304.1 |
H16 |
C26 |
C25 |
H15 |
58.0 |
184.1 |
C27 |
C26 |
H17 |
H16 |
240.4 |
120.4 |
H17 |
C26 |
C25 |
H14 |
57.7 |
64.5 |
H17 |
C26 |
C25 |
H15 |
298.3 |
304.5 |
H18 |
C28 |
C27 |
C29 |
109.5 |
107.5 |
C27 |
C28 |
H18 |
H19 |
144.7 |
145.7 |
C29 |
C28 |
H18 |
H19 |
215.3 |
214.3 |
H19 |
C28 |
C27 |
C29 |
250.5 |
252.5 |
C27 |
C28 |
H19 |
H18 |
215.3 |
214.3 |
C29 |
C28 |
H19 |
H18 |
144.7 |
145.7 |
C27 |
C29 |
H20 |
C28 |
289.5 |
291.4 |
C27 |
C29 |
H20 |
H21 |
144.7 |
145.7 |
H20 |
C29 |
C28 |
H18 |
141.1 |
145.0 |
H20 |
C29 |
C28 |
H19 |
0.0 |
0.0 |
C27 |
C29 |
H21 |
C28 |
70.5 |
68.5 |
C27 |
C29 |
H21 |
H20 |
215.3 |
214.2 |
H21 |
C29 |
C28 |
H18 |
360.0 |
360.0 |
H21 |
C29 |
C28 |
H19 |
218.9 |
215.0 |