Atom Nomenclature for 3TS

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 3TS

Atom Name (V3) Atom Name (V2)
C1 C1
O1 O1
C2 C2
N2 N2
C3 C3
O3 O3
C4 C4
O4 O4
C5 C5
O5 O5
C6 C6
O6 O6
CAN CAN
CAO CAO
CAP CAP
CAQ CAQ
CAU CAU
CBD CBD
CBE CBE
CLA CLA
CBF CBF
CAV CAV
CBG CBG
CBV CBV
CBX CBX
CBK CBK
NAB NAB
NAC NAC
O1' O1'
OAI OAI
C4' C4'
O4' O4'
C1' C1'
C2' C2'
O2' O2'
C3' C3'
O3' O3'
C5' C5'
O5' O5'
CBO CBO
OAX OAX
CBR CBR
CBH CBH
NAD NAD
CBJ CBJ
OAH OAH
CBL CBL
OAJ OAJ
CAR CAR
NAA NAA
H1 H1
H2 H2
HN2 HN2
HN2A HN2A
H3 H3
HO3 HO3
H4 H4
H5 H5
H6 H6
H6A H6A
HO6 HO6
HAN HAN
HAO HAO
HAP HAP
HAQ HAQ
HAU HAU
HAUA HAUA
HBF HBF
HAV HAV
HAVA HAVA
HBG HBG
HBV HBV
HBX HBX
HBK HBK
HNAC HNAC
HNAD HNAD
HNAE HNAE
HNAF HNAF
HOAI HOAI
H4' H4'
H1' H1'
H2' H2'
HO2' HO2'
H3' H3'
H5' H5'
H5'A H5'A
HO5' HO5'
HBO HBO
HBR HBR
HBH HBH
HNAG HNAG
HNAH HNAH
HBJ HBJ
HOAH HOAH
HBL HBL
HOAJ HOAJ
HAR HAR
HARA HARA
HNAA HNAA
HNAB HNAB