PDB Chemical Component 3R2

Ideal Model

Chemical Description

Name 2'-deoxy-5'-O-[(R)-{[(R)-{[(1S,3R,4R,5S)-3,4-dihydroxy-5-methylcyclohexyl]oxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-3,4-dihydrothymidine
Formula C17 H28 N2 O13 P2
Formal charge 0
Molecular weight 530.357 g/mol
Component type NON-POLYMER

Chemical features

Atom count 62
Chiral atom count 7
Chiral atoms C1C C3C C4C C1' C3' C4' C5'
Bond count 64
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-5'-O-[(R)-{[(R)-{[(1S,3R,4R,5S)-3,4-dihydroxy-5-methylcyclohexyl]oxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-3,4-dihydrothymidine
Systematic name (OpenEye OEToolkits) [(1S,3S,4R,5R)-3-methyl-4,5-bis(oxidanyl)cyclohexyl] [[(2R,3S,5R)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) C[C@H]1C[C@@H](C[C@@H](O)[C@@H]1O)O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H](C[C@@H]2O)N3C=C(C)C(=O)NC3=O
SMILES (CACTVS) C[CH]1C[CH](C[CH](O)[CH]1O)O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH](C[CH]2O)N3C=C(C)C(=O)NC3=O
Stereo SMILES (OpenEye) C[C@H]1C[C@@H](C[C@H]([C@@H]1O)O)OP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H](C[C@@H](O2)N3C=C(C(=O)NC3=O)C)O
InChI descriptor InChI=1S/C17H28N2O13P2/c1-8-3-10(4-12(21)15(8)22)31-34(27,28)32-33(25,26)29-7-13-11(20)5-14(30-13)19-6-9(2)16(23)18-17(19)24/h6,8,10-15,20-22H,3-5,7H2,1-2H3,(H,25,26)(H,27,28)(H,18,23,24)/t8-,10-,11-,12+,13+,14+,15+/m0/s1
InChIKey descriptor CWVOKCJHBPKJQP-PVMIAKCWSA-N

Status Information

Last modified 2015-01-23
Created 2014-10-10
Release status REL
Model PDB code 4RIF
Processing site RCSB