PDB Chemical Component 3R2
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 3R2
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O3C |
C3C |
1.430 |
1.429 |
| O2 |
C2 |
1.228 |
1.216 |
| C6' |
C5' |
1.513 |
1.530 |
| C3C |
C2C |
1.506 |
1.546 |
| C3C |
C4C |
1.526 |
1.544 |
| C2C |
C1C |
1.515 |
1.545 |
| C1C |
O4C |
1.436 |
1.445 |
| C1C |
N1 |
1.458 |
1.465 |
| C2 |
N1 |
1.374 |
1.345 |
| C2 |
N3 |
1.375 |
1.346 |
| C4C |
O4C |
1.431 |
1.444 |
| C4C |
C5C |
1.527 |
1.530 |
| O4' |
C4' |
1.425 |
1.429 |
| N1 |
C6 |
1.388 |
1.368 |
| C5' |
C4' |
1.527 |
1.530 |
| C5' |
C7' |
1.529 |
1.531 |
| N3 |
C4 |
1.384 |
1.349 |
| C4' |
C3' |
1.517 |
1.530 |
| O5C |
C5C |
1.413 |
1.428 |
| O5C |
PA |
1.634 |
1.610 |
| C7' |
C1' |
1.526 |
1.529 |
| O1A |
PA |
1.506 |
1.480 |
| C6 |
C5 |
1.342 |
1.350 |
| C4 |
C5 |
1.487 |
1.416 |
| C4 |
O4 |
1.231 |
1.218 |
| PA |
O3A |
1.611 |
1.610 |
| PA |
O2A |
1.613 |
1.610 |
| O3B |
C1' |
1.431 |
1.429 |
| O3B |
PB |
1.629 |
1.609 |
| C3' |
O3' |
1.427 |
1.429 |
| C3' |
C2' |
1.520 |
1.530 |
| C5 |
C5M |
1.483 |
1.507 |
| C1' |
C2' |
1.532 |
1.531 |
| O2B |
PB |
1.608 |
1.481 |
| O3A |
PB |
1.610 |
1.610 |
| PB |
O1B |
1.510 |
1.610 |
| N3 |
H1 |
1.000 |
0.970 |
| C5M |
H2 |
1.100 |
1.090 |
| C5M |
H3 |
1.100 |
1.089 |
| C5M |
H4 |
1.100 |
1.090 |
| C6 |
H5 |
1.080 |
1.080 |
| C1C |
H6 |
1.100 |
1.090 |
| C2C |
H7 |
1.100 |
1.089 |
| C2C |
H8 |
1.100 |
1.090 |
| C3C |
H9 |
1.100 |
1.091 |
| O3C |
H10 |
0.950 |
0.967 |
| C4C |
H11 |
1.100 |
1.091 |
| C5C |
H12 |
1.100 |
1.091 |
| C5C |
H13 |
1.100 |
1.090 |
| O2A |
H14 |
0.950 |
0.967 |
| O1B |
H15 |
0.950 |
0.966 |
| C1' |
H16 |
1.100 |
1.090 |
| C2' |
H17 |
1.100 |
1.090 |
| C2' |
H18 |
1.100 |
1.090 |
| C3' |
H19 |
1.100 |
1.090 |
| O3' |
H20 |
0.950 |
0.967 |
| C4' |
H21 |
1.100 |
1.089 |
| O4' |
H22 |
0.950 |
0.967 |
| C5' |
H23 |
1.100 |
1.091 |
| C6' |
H24 |
1.100 |
1.090 |
| C6' |
H25 |
1.100 |
1.090 |
| C6' |
H26 |
1.100 |
1.090 |
| C7' |
H27 |
1.100 |
1.090 |
| C7' |
H28 |
1.100 |
1.090 |
Bond Angles for 3R2
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O3C |
C3C |
C4C |
106.7 |
110.6 |
| O3C |
C3C |
H9 |
113.7 |
110.6 |
| O2 |
C2 |
N1 |
123.9 |
119.5 |
| C6' |
C5' |
C7' |
110.6 |
109.5 |
| C6' |
C5' |
H23 |
107.5 |
109.5 |
| C3C |
C2C |
H7 |
111.3 |
110.5 |
| C3C |
C2C |
H8 |
111.3 |
110.6 |
| C3C |
C4C |
C5C |
110.3 |
110.4 |
| C4C |
C3C |
H9 |
112.2 |
110.5 |
| C3C |
C4C |
H11 |
110.6 |
110.4 |
| C2C |
C1C |
H6 |
109.1 |
110.5 |
| O4C |
C1C |
H6 |
110.2 |
110.4 |
| C2 |
N1 |
C6 |
121.5 |
120.6 |
| C2 |
N3 |
H1 |
116.2 |
119.9 |
| C5C |
C4C |
H11 |
110.6 |
110.4 |
| C4C |
C5C |
H12 |
110.0 |
109.5 |
| C4C |
C5C |
H13 |
110.1 |
109.4 |
| O4' |
C4' |
H21 |
110.6 |
109.5 |
| N1 |
C6 |
H5 |
118.1 |
120.1 |
| C5' |
C4' |
H21 |
109.2 |
109.5 |
| C7' |
C5' |
H23 |
107.3 |
109.4 |
| C5' |
C7' |
H27 |
109.1 |
109.4 |
| C5' |
C7' |
H28 |
109.1 |
109.4 |
| N3 |
C4 |
C5 |
114.6 |
119.4 |
| C4' |
C3' |
H19 |
108.1 |
109.5 |
| O5C |
C5C |
H12 |
110.0 |
109.5 |
| O5C |
C5C |
H13 |
110.0 |
109.5 |
| O5C |
PA |
O3A |
106.7 |
109.5 |
| O5C |
PA |
O2A |
108.4 |
109.5 |
| C7' |
C1' |
H16 |
109.3 |
109.5 |
| O1A |
PA |
O3A |
109.6 |
109.5 |
| O1A |
PA |
O2A |
117.6 |
109.4 |
| C4 |
C5 |
C5M |
120.5 |
120.5 |
| O2A |
PA |
O3A |
102.2 |
109.5 |
| PA |
O3A |
PB |
138.6 |
134.0 |
| PA |
O2A |
H14 |
109.5 |
114.0 |
| O3B |
C1' |
C2' |
112.3 |
109.5 |
| O3B |
C1' |
H16 |
110.7 |
109.5 |
| O3' |
C3' |
H19 |
109.3 |
109.4 |
| C3' |
O3' |
H20 |
109.5 |
114.0 |
| C3' |
C2' |
H17 |
108.5 |
109.5 |
| C3' |
C2' |
H18 |
108.5 |
109.5 |
| C5 |
C5M |
H2 |
109.5 |
109.4 |
| C5 |
C5M |
H3 |
109.4 |
109.5 |
| C5 |
C5M |
H4 |
109.4 |
109.5 |
| C2' |
C1' |
H16 |
109.3 |
109.4 |
| C1' |
C2' |
H17 |
108.5 |
109.5 |
| C1' |
C2' |
H18 |
108.5 |
109.5 |
| O3A |
PB |
O1B |
107.1 |
109.5 |
| PB |
O1B |
H15 |
109.5 |
114.0 |
| H2 |
C5M |
H3 |
109.5 |
109.5 |
| H2 |
C5M |
H4 |
109.5 |
109.4 |
| H3 |
C5M |
H4 |
109.5 |
109.5 |
| H7 |
C2C |
H8 |
109.4 |
110.5 |
| H12 |
C5C |
H13 |
109.5 |
109.4 |
| H17 |
C2' |
H18 |
109.5 |
109.5 |
| H24 |
C6' |
H25 |
109.5 |
109.5 |
| H24 |
C6' |
H26 |
109.5 |
109.4 |
| H25 |
C6' |
H26 |
109.5 |
109.5 |
| H27 |
C7' |
H28 |
109.5 |
109.5 |
Torsion Angles for 3R2
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O3C |
C3C |
C2C |
H7 |
197.1 |
0.0 |
| O3C |
C3C |
C2C |
H8 |
319.5 |
237.4 |
| O3C |
C3C |
C4C |
C5C |
154.6 |
98.5 |
| C4C |
C3C |
O3C |
H9 |
235.8 |
237.3 |
| O3C |
C3C |
C4C |
H11 |
32.0 |
336.2 |
| O2 |
C2 |
N1 |
C6 |
182.1 |
180.3 |
| O2 |
C2 |
N3 |
H1 |
358.8 |
0.1 |
| C6' |
C5' |
C4' |
H21 |
298.4 |
300.0 |
| C7' |
C5' |
C6' |
H23 |
116.8 |
119.9 |
| C6' |
C5' |
C7' |
H27 |
304.2 |
60.0 |
| C6' |
C5' |
C7' |
H28 |
63.7 |
300.1 |
| C3C |
C2C |
C1C |
H6 |
275.3 |
265.1 |
| H7 |
C2C |
C3C |
H8 |
237.6 |
122.7 |
| O3C |
C3C |
C4C |
H9 |
125.2 |
122.7 |
| C4C |
C3C |
C2C |
H7 |
84.4 |
241.3 |
| C4C |
C3C |
C2C |
H8 |
206.8 |
118.7 |
| C5C |
C4C |
C3C |
H11 |
122.6 |
122.3 |
| C3C |
C4C |
C5C |
H12 |
36.7 |
305.1 |
| C3C |
C4C |
C5C |
H13 |
157.4 |
65.0 |
| O4C |
C1C |
C2C |
H6 |
118.3 |
118.9 |
| C2C |
C1C |
O4C |
H6 |
242.5 |
241.0 |
| C1C |
N1 |
C6 |
H5 |
0.9 |
0.4 |
| N1 |
C2 |
N3 |
H1 |
180.1 |
180.0 |
| C2 |
N1 |
C6 |
H5 |
179.6 |
180.0 |
| C2 |
N3 |
C4 |
C5 |
358.8 |
0.1 |
| C4C |
O4C |
C1C |
H6 |
97.9 |
78.4 |
| C5C |
C4C |
C3C |
H9 |
29.4 |
335.8 |
| C3C |
C4C |
C5C |
H11 |
237.4 |
237.7 |
| O5C |
C5C |
C4C |
H12 |
240.4 |
240.0 |
| O5C |
C5C |
C4C |
H13 |
119.6 |
120.0 |
| H12 |
C5C |
C4C |
H13 |
239.3 |
240.1 |
| C5' |
C4' |
O4' |
H21 |
239.1 |
240.0 |
| O4' |
C4' |
C3' |
H19 |
55.6 |
60.0 |
| O4' |
C4' |
C5' |
H21 |
121.7 |
120.0 |
| C5' |
C4' |
C3' |
H19 |
295.4 |
300.0 |
| C6' |
C5' |
C7' |
H23 |
243.1 |
240.0 |
| C7' |
C5' |
C4' |
H21 |
63.2 |
60.0 |
| C5' |
C7' |
C1' |
H16 |
185.0 |
180.1 |
| H27 |
C7' |
C5' |
H28 |
240.5 |
119.9 |
| N3 |
C4 |
C5 |
C5M |
181.1 |
179.8 |
| O3' |
C3' |
C4' |
H19 |
240.8 |
240.0 |
| C4' |
C3' |
O3' |
H20 |
180.0 |
180.1 |
| C4' |
C3' |
C2' |
H17 |
66.9 |
180.0 |
| C4' |
C3' |
C2' |
H18 |
185.8 |
60.0 |
| O5C |
C5C |
C4C |
H11 |
39.7 |
307.3 |
| C4C |
C5C |
O5C |
H12 |
119.6 |
120.0 |
| C4C |
C5C |
O5C |
H13 |
240.3 |
240.0 |
| H12 |
C5C |
O5C |
H13 |
120.7 |
120.0 |
| PA |
O5C |
C5C |
H12 |
33.2 |
60.0 |
| PA |
O5C |
C5C |
H13 |
272.5 |
300.0 |
| O1A |
PA |
O5C |
O3A |
119.6 |
120.1 |
| O1A |
PA |
O5C |
O2A |
229.1 |
240.0 |
| O2A |
PA |
O5C |
O3A |
250.5 |
240.0 |
| O5C |
PA |
O3A |
PB |
357.1 |
165.0 |
| O5C |
PA |
O2A |
H14 |
232.6 |
60.0 |
| O3B |
C1' |
C7' |
H16 |
241.1 |
240.0 |
| C2' |
C1' |
C7' |
H16 |
120.0 |
120.0 |
| C7' |
C1' |
C2' |
H17 |
292.9 |
180.0 |
| C7' |
C1' |
C2' |
H18 |
174.0 |
300.0 |
| O5C |
PA |
O1A |
O3A |
242.1 |
239.9 |
| O5C |
PA |
O1A |
O2A |
126.0 |
120.0 |
| O2A |
PA |
O1A |
O3A |
116.2 |
120.0 |
| O1A |
PA |
O3A |
PB |
236.4 |
44.9 |
| O1A |
PA |
O2A |
H14 |
360.0 |
180.0 |
| C2 |
N1 |
C6 |
C5 |
359.6 |
359.3 |
| C6 |
C5 |
C5M |
H2 |
180.0 |
180.0 |
| C6 |
C5 |
C5M |
H3 |
300.0 |
300.1 |
| C6 |
C5 |
C5M |
H4 |
60.0 |
60.1 |
| C4 |
C5 |
C5M |
H2 |
0.4 |
359.9 |
| C4 |
C5 |
C5M |
H3 |
120.4 |
119.9 |
| C4 |
C5 |
C5M |
H4 |
240.4 |
240.0 |
| O5C |
PA |
O3A |
O2A |
246.2 |
240.0 |
| O1A |
PA |
O3A |
O2A |
125.5 |
120.0 |
| O3A |
PA |
O2A |
H14 |
120.1 |
300.0 |
| PA |
O3A |
PB |
O1B |
205.4 |
285.1 |
| O5C |
PA |
O2A |
O3A |
112.5 |
120.0 |
| O1A |
PA |
O2A |
O3A |
239.9 |
240.0 |
| O2A |
PA |
O3A |
PB |
110.8 |
284.9 |
| C7' |
C1' |
O3B |
H16 |
118.0 |
120.0 |
| C2' |
C1' |
O3B |
H16 |
237.6 |
240.0 |
| O3B |
C1' |
C2' |
H17 |
176.1 |
60.0 |
| O3B |
C1' |
C2' |
H18 |
57.2 |
180.0 |
| O3B |
PB |
O1B |
H15 |
235.5 |
60.0 |
| C4' |
C3' |
O3' |
H19 |
118.5 |
120.0 |
| O3' |
C3' |
C2' |
H17 |
304.9 |
60.0 |
| O3' |
C3' |
C2' |
H18 |
63.7 |
300.0 |
| C3' |
C2' |
C1' |
H16 |
173.4 |
180.0 |
| C1' |
C2' |
C3' |
H17 |
239.4 |
120.0 |
| C1' |
C2' |
C3' |
H18 |
120.6 |
240.0 |
| H17 |
C2' |
C3' |
H18 |
241.1 |
120.0 |
| H2 |
C5M |
C5 |
H3 |
240.0 |
240.0 |
| H2 |
C5M |
C5 |
H4 |
120.0 |
119.9 |
| H3 |
C5M |
C5 |
H4 |
240.1 |
239.9 |
| C7' |
C1' |
C2' |
H16 |
240.0 |
240.0 |
| O3B |
C1' |
C2' |
H16 |
123.2 |
120.0 |
| C3' |
C2' |
C1' |
H17 |
120.5 |
240.0 |
| C3' |
C2' |
C1' |
H18 |
239.4 |
120.0 |
| H17 |
C2' |
C1' |
H18 |
118.9 |
240.0 |
| O2B |
PB |
O1B |
H15 |
0.0 |
180.0 |
| O3A |
PB |
O1B |
H15 |
119.9 |
300.0 |
| H1 |
N3 |
C4 |
C5 |
178.8 |
180.0 |
| C5 |
C5M |
H2 |
H3 |
120.0 |
120.1 |
| C5 |
C5M |
H2 |
H4 |
240.0 |
240.1 |
| H3 |
C5M |
H2 |
H4 |
120.0 |
120.0 |
| C5 |
C5M |
H3 |
H2 |
240.0 |
240.0 |
| C5 |
C5M |
H3 |
H4 |
119.9 |
120.0 |
| H2 |
C5M |
H3 |
H4 |
240.0 |
240.0 |
| C5 |
C5M |
H4 |
H2 |
120.0 |
119.9 |
| C5 |
C5M |
H4 |
H3 |
240.1 |
239.9 |
| H2 |
C5M |
H4 |
H3 |
120.0 |
120.0 |
| C3C |
C2C |
H7 |
H8 |
123.5 |
237.3 |
| H7 |
C2C |
C1C |
H6 |
156.5 |
23.7 |
| C3C |
C2C |
H8 |
H7 |
236.5 |
122.6 |
| H8 |
C2C |
C1C |
H6 |
34.1 |
146.4 |
| O3C |
C3C |
H9 |
C4C |
238.8 |
237.3 |
| H9 |
C3C |
C2C |
H7 |
323.1 |
122.7 |
| H9 |
C3C |
C2C |
H8 |
85.4 |
0.1 |
| H9 |
C3C |
C4C |
C5C |
29.4 |
335.8 |
| H9 |
C3C |
C4C |
H11 |
266.8 |
213.5 |
| H10 |
O3C |
C3C |
C4C |
290.6 |
176.1 |
| H10 |
O3C |
C3C |
H9 |
54.8 |
298.8 |
| C3C |
C4C |
H11 |
C5C |
122.4 |
122.3 |
| H11 |
C4C |
C3C |
H9 |
266.8 |
213.5 |
| H11 |
C4C |
C5C |
H12 |
159.3 |
67.4 |
| H11 |
C4C |
C5C |
H13 |
280.0 |
187.3 |
| H12 |
C5C |
C4C |
H11 |
159.3 |
67.4 |
| C4C |
C5C |
H12 |
H13 |
121.1 |
119.9 |
| O5C |
C5C |
H12 |
H13 |
239.0 |
240.0 |
| H13 |
C5C |
C4C |
H11 |
280.0 |
187.3 |
| C4C |
C5C |
H13 |
H12 |
238.9 |
240.1 |
| O5C |
C5C |
H13 |
H12 |
121.0 |
120.0 |
| H14 |
O2A |
PA |
O3A |
120.1 |
300.0 |
| O3B |
C1' |
H16 |
C2' |
235.8 |
240.0 |
| H16 |
C1' |
C2' |
H17 |
52.9 |
300.0 |
| H16 |
C1' |
C2' |
H18 |
294.0 |
60.0 |
| C3' |
C2' |
H17 |
H18 |
118.3 |
240.0 |
| H17 |
C2' |
C1' |
H16 |
52.9 |
300.0 |
| C1' |
C2' |
H17 |
H18 |
241.7 |
120.0 |
| C3' |
C2' |
H18 |
H17 |
241.7 |
120.1 |
| H18 |
C2' |
C1' |
H16 |
294.0 |
60.0 |
| C1' |
C2' |
H18 |
H17 |
118.3 |
240.0 |
| H19 |
C3' |
O3' |
H20 |
61.4 |
60.1 |
| H19 |
C3' |
C2' |
H17 |
185.8 |
300.0 |
| H19 |
C3' |
C2' |
H18 |
304.7 |
180.0 |
| H20 |
O3' |
C3' |
H19 |
61.4 |
60.1 |
| H21 |
C4' |
C3' |
H19 |
175.4 |
180.0 |
| H22 |
O4' |
C4' |
H21 |
300.8 |
300.0 |
| C6' |
C5' |
H23 |
C7' |
119.0 |
120.0 |
| H23 |
C5' |
C4' |
H21 |
180.3 |
180.0 |
| H23 |
C5' |
C7' |
H27 |
61.2 |
180.0 |
| H23 |
C5' |
C7' |
H28 |
180.7 |
60.0 |
| H24 |
C6' |
C5' |
C7' |
54.8 |
299.9 |
| H24 |
C6' |
C5' |
H23 |
298.0 |
180.0 |
| H25 |
C6' |
H24 |
H26 |
120.0 |
120.1 |
| H25 |
C6' |
C5' |
C7' |
174.8 |
60.0 |
| H25 |
C6' |
C5' |
H23 |
58.0 |
300.0 |
| H24 |
C6' |
H25 |
H26 |
240.0 |
240.0 |
| H26 |
C6' |
C5' |
C7' |
294.8 |
180.0 |
| H26 |
C6' |
C5' |
H23 |
178.0 |
60.1 |
| H24 |
C6' |
H26 |
H25 |
120.0 |
120.1 |
| H27 |
C7' |
C5' |
H23 |
61.2 |
180.0 |
| C5' |
C7' |
H27 |
H28 |
119.3 |
240.1 |
| H27 |
C7' |
C1' |
H16 |
64.7 |
300.0 |
| H28 |
C7' |
C5' |
H23 |
180.7 |
60.0 |
| C5' |
C7' |
H28 |
H27 |
240.7 |
119.9 |
| H28 |
C7' |
C1' |
H16 |
305.2 |
60.1 |