Atom Nomenclature for 3QP

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 3QP

Atom Name (V3) Atom Name (V2)
C01 C01
C02 C02
C03 C03
O04 O04
C05 C05
C06 C06
C07 C07
O08 O08
P09 P09
O10 O10
O11 O11
O12 O12
C13 C13
C14 C14
C15 C15
N16 N16
C17 C17
C18 C18
C19 C19
O20 O20
O21 O21
C22 C22
O23 O23
O24 O24
H01 H01
H01A H01A
H01B H01B
HO04 HO04
H07 H07
H07A H07A
HO10 HO10
HO12 HO12
H13 H13
H14 H14
H15 H15
H17 H17
H18 H18
H18A H18A
HO21 HO21
HO24 HO24