PDB Chemical Component 3QD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 3QD

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C12 C13 1.544 1.530
C13 B1 1.671 1.570
B1 O2 1.427 1.420
C12 H1 1.100 1.090
C12 H2 1.100 1.090
C12 H3 1.100 1.090
C13 H4 1.100 1.090
C13 H5 1.100 1.090
O2 H7 0.950 0.967
B1 O1 1.421 1.420
O1 H6 0.951 0.967

Bond Angles for 3QD

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C12 C13 B1 116.1 109.5
C13 C12 H1 109.5 109.5
C13 C12 H2 109.5 109.5
C13 C12 H3 109.5 109.4
C12 C13 H4 107.8 109.5
C12 C13 H5 107.8 109.5
C13 B1 O2 121.2 120.0
B1 C13 H4 107.8 109.5
B1 C13 H5 107.8 109.5
C13 B1 O1 126.1 120.0
B1 O2 H7 109.5 114.0
O2 B1 O1 107.9 120.0
H1 C12 H2 109.4 109.5
H1 C12 H3 109.5 109.5
H2 C12 H3 109.5 109.5
H4 C13 H5 109.5 109.5
B1 O1 H6 109.5 114.0

Torsion Angles for 3QD

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C12 C13 B1 O2 31.7 -0.0
B1 C13 C12 H4 239.1 240.0
B1 C13 C12 H5 120.9 120.0
C12 C13 B1 O1 239.1 180.0
H1 C12 C13 H2 240.0 240.0
H1 C12 C13 H3 120.0 120.0
H2 C12 C13 H3 240.0 240.0
H4 C13 C12 H5 241.9 240.0
B1 C13 C12 H1 180.0 300.0
B1 C13 C12 H2 300.0 60.0
B1 C13 C12 H3 60.0 180.0
C12 C13 B1 H4 120.9 120.0
C12 C13 B1 H5 239.0 240.0
C13 B1 O2 H7 180.0 180.0
O2 B1 C13 O1 152.6 180.0
H4 C13 B1 H5 118.1 120.0
C13 B1 O1 H6 180.0 180.0
O2 B1 C13 H4 270.7 240.0
O2 B1 C13 H5 152.6 120.0
C13 B1 O2 O1 203.0 180.0
O2 B1 O1 H6 24.4 -0.0
H1 C12 C13 B1 180.0 300.0
C13 C12 H1 H2 120.0 120.0
C13 C12 H1 H3 240.0 240.0
H1 C12 C13 H4 301.0 60.0
H1 C12 C13 H5 59.1 180.0
H2 C12 H1 H3 120.0 120.0
H2 C12 C13 B1 300.0 60.0
C13 C12 H2 H1 240.0 240.0
C13 C12 H2 H3 120.0 120.0
H2 C12 C13 H4 60.9 180.0
H2 C12 C13 H5 179.1 300.0
H1 C12 H2 H3 240.0 240.0
H3 C12 C13 B1 60.0 180.0
C13 C12 H3 H1 120.1 120.0
C13 C12 H3 H2 240.0 240.0
H3 C12 C13 H4 180.9 300.0
H3 C12 C13 H5 299.1 60.0
H1 C12 H3 H2 120.0 120.1
C12 C13 H4 B1 234.0 240.0
H4 C13 C12 H1 301.0 60.0
H4 C13 C12 H2 60.9 180.0
H4 C13 C12 H3 180.9 300.0
C12 C13 H4 H5 117.0 120.0
H4 C13 B1 O2 270.7 240.0
B1 C13 H4 H5 243.0 240.0
H4 C13 B1 O1 118.1 60.0
C12 C13 H5 B1 126.0 120.0
H5 C13 C12 H1 59.1 180.0
H5 C13 C12 H2 179.1 300.0
H5 C13 C12 H3 299.1 60.0
C12 C13 H5 H4 243.0 240.0
H5 C13 B1 O2 152.6 120.0
B1 C13 H5 H4 117.0 120.0
H5 C13 B1 O1 0.0 300.0
H7 O2 B1 O1 337.0 -0.0
C13 B1 O1 O2 155.6 180.0
O1 B1 C13 H4 118.1 60.0
O1 B1 C13 H5 0.0 300.0
O1 B1 O2 H7 337.0 -0.0