PDB Chemical Component 3Q5
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 3Q5
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2 |
C1 |
1.382 |
1.355 |
| C5 |
C1 |
1.390 |
1.409 |
| C1 |
H1 |
1.080 |
1.080 |
| C6 |
C2 |
1.384 |
1.407 |
| C2 |
H2 |
1.080 |
1.080 |
| C3 |
C6 |
1.381 |
1.378 |
| C3 |
C7 |
1.380 |
1.410 |
| C3 |
H3 |
1.079 |
1.080 |
| C8 |
C4 |
1.379 |
1.393 |
| C9 |
C4 |
1.383 |
1.395 |
| C4 |
H4 |
1.080 |
1.080 |
| C7 |
C5 |
1.380 |
1.471 |
| C5 |
C10 |
1.424 |
1.393 |
| C8 |
C6 |
1.463 |
1.483 |
| N26 |
C7 |
1.371 |
1.321 |
| N23 |
C8 |
1.342 |
1.334 |
| N24 |
C9 |
1.339 |
1.329 |
| C9 |
N27 |
1.417 |
1.385 |
| N25 |
C10 |
1.339 |
1.344 |
| C10 |
N28 |
1.365 |
1.386 |
| N29 |
C11 |
1.399 |
1.385 |
| C11 |
N23 |
1.344 |
1.323 |
| C11 |
N24 |
1.337 |
1.325 |
| O32 |
C12 |
1.361 |
1.346 |
| N30 |
C12 |
1.378 |
1.348 |
| C12 |
O31 |
1.221 |
1.215 |
| C16 |
C13 |
1.520 |
1.532 |
| C13 |
C14 |
1.526 |
1.532 |
| C13 |
H13 |
1.100 |
1.090 |
| C13 |
H13A |
1.100 |
1.090 |
| C17 |
C14 |
1.511 |
1.530 |
| C14 |
H14 |
1.100 |
1.090 |
| C14 |
H14A |
1.100 |
1.089 |
| C15 |
N27 |
1.452 |
1.469 |
| C15 |
C16 |
1.517 |
1.531 |
| C15 |
H15 |
1.100 |
1.090 |
| C15 |
H15A |
1.100 |
1.089 |
| N30 |
C16 |
1.445 |
1.465 |
| C16 |
H16 |
1.100 |
1.090 |
| C18 |
C17 |
1.507 |
1.531 |
| N27 |
C17 |
1.452 |
1.469 |
| C17 |
H17 |
1.100 |
1.090 |
| C18 |
H18 |
1.100 |
1.090 |
| C18 |
H18A |
1.100 |
1.090 |
| C18 |
H18B |
1.100 |
1.090 |
| C22 |
C19 |
1.516 |
1.530 |
| C19 |
H19 |
1.100 |
1.090 |
| C19 |
H19A |
1.101 |
1.090 |
| C19 |
H19B |
1.100 |
1.090 |
| C20 |
C22 |
1.514 |
1.531 |
| C20 |
H20 |
1.100 |
1.090 |
| C20 |
H20A |
1.100 |
1.090 |
| C20 |
H20B |
1.100 |
1.090 |
| C21 |
C22 |
1.512 |
1.530 |
| C21 |
H21 |
1.100 |
1.091 |
| C21 |
H21A |
1.100 |
1.090 |
| C21 |
H21B |
1.100 |
1.090 |
| O32 |
C22 |
1.425 |
1.452 |
| N26 |
N25 |
1.347 |
1.399 |
| N28 |
HN28 |
1.000 |
0.970 |
| N28 |
HN2A |
1.000 |
0.970 |
| N29 |
HN29 |
1.000 |
0.969 |
| N29 |
HN2B |
1.000 |
0.970 |
| N30 |
HN30 |
1.000 |
0.971 |
| N25 |
HN25 |
1.000 |
0.969 |
Bond Angles for 3Q5
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
H1 |
121.6 |
120.1 |
| C5 |
C1 |
H1 |
121.6 |
120.1 |
| C6 |
C2 |
H2 |
118.2 |
119.2 |
| C6 |
C3 |
C7 |
116.7 |
119.4 |
| C6 |
C3 |
H3 |
121.6 |
120.3 |
| C7 |
C3 |
H3 |
121.6 |
120.3 |
| C3 |
C7 |
C5 |
124.2 |
118.7 |
| C8 |
C4 |
H4 |
121.0 |
120.8 |
| C9 |
C4 |
H4 |
121.0 |
120.8 |
| C7 |
C5 |
C10 |
105.3 |
106.3 |
| C5 |
C10 |
N28 |
122.8 |
126.2 |
| N24 |
C9 |
N27 |
119.1 |
120.4 |
| C9 |
N27 |
C15 |
118.3 |
111.0 |
| C9 |
N27 |
C17 |
116.9 |
111.0 |
| N25 |
C10 |
N28 |
126.0 |
126.2 |
| C10 |
N28 |
HN28 |
109.5 |
120.0 |
| C10 |
N28 |
HN2A |
109.5 |
120.0 |
| N23 |
C11 |
N24 |
125.0 |
121.8 |
| N30 |
C12 |
O31 |
126.6 |
120.0 |
| C16 |
C13 |
H13 |
109.0 |
109.5 |
| C16 |
C13 |
H13A |
109.0 |
109.5 |
| C14 |
C13 |
H13 |
109.1 |
109.5 |
| C14 |
C13 |
H13A |
109.0 |
109.5 |
| C13 |
C14 |
H14 |
109.1 |
109.5 |
| C13 |
C14 |
H14A |
109.1 |
109.5 |
| H13 |
C13 |
H13A |
109.9 |
109.6 |
| C17 |
C14 |
H14 |
109.0 |
109.5 |
| C17 |
C14 |
H14A |
109.0 |
109.6 |
| H14 |
C14 |
H14A |
109.9 |
109.5 |
| C16 |
C15 |
N27 |
99.7 |
109.5 |
| N27 |
C15 |
H15 |
112.9 |
109.5 |
| N27 |
C15 |
H15A |
112.9 |
109.5 |
| C15 |
N27 |
C17 |
117.0 |
111.2 |
| C16 |
C15 |
H15 |
112.8 |
109.4 |
| C16 |
C15 |
H15A |
112.9 |
109.4 |
| C15 |
C16 |
H16 |
108.3 |
109.6 |
| H15 |
C15 |
H15A |
105.9 |
109.5 |
| N30 |
C16 |
H16 |
104.8 |
109.5 |
| C18 |
C17 |
H17 |
105.8 |
109.5 |
| N27 |
C17 |
H17 |
113.1 |
109.4 |
| H18 |
C18 |
H18A |
109.5 |
109.5 |
| H18 |
C18 |
H18B |
109.4 |
109.5 |
| H18A |
C18 |
H18B |
109.5 |
109.5 |
| C22 |
C19 |
H19 |
109.5 |
109.5 |
| C22 |
C19 |
H19A |
109.5 |
109.4 |
| C22 |
C19 |
H19B |
109.5 |
109.5 |
| H19 |
C19 |
H19A |
109.4 |
109.5 |
| H19 |
C19 |
H19B |
109.5 |
109.5 |
| H19A |
C19 |
H19B |
109.5 |
109.5 |
| C22 |
C20 |
H20 |
109.5 |
109.4 |
| C22 |
C20 |
H20A |
109.5 |
109.4 |
| C22 |
C20 |
H20B |
109.5 |
109.5 |
| C20 |
C22 |
C21 |
108.7 |
109.5 |
| H20 |
C20 |
H20A |
109.4 |
109.5 |
| H20 |
C20 |
H20B |
109.5 |
109.5 |
| H20A |
C20 |
H20B |
109.5 |
109.5 |
| C22 |
C21 |
H21 |
109.5 |
109.5 |
| C22 |
C21 |
H21A |
109.5 |
109.5 |
| C22 |
C21 |
H21B |
109.5 |
109.5 |
| H21 |
C21 |
H21A |
109.5 |
109.5 |
| H21 |
C21 |
H21B |
109.4 |
109.5 |
| H21A |
C21 |
H21B |
109.5 |
109.5 |
| N26 |
N25 |
HN25 |
127.8 |
125.0 |
| HN28 |
N28 |
HN2A |
109.5 |
120.0 |
| HN29 |
N29 |
HN2B |
109.5 |
120.0 |
Torsion Angles for 3Q5
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C5 |
C1 |
C2 |
H1 |
180.0 |
180.3 |
| C2 |
C1 |
C5 |
H1 |
180.0 |
179.7 |
| C6 |
C2 |
C1 |
H1 |
179.8 |
180.0 |
| H2 |
C2 |
C1 |
H1 |
359.8 |
359.9 |
| C3 |
C6 |
C2 |
H2 |
180.4 |
180.0 |
| C7 |
C3 |
C6 |
H3 |
180.0 |
179.8 |
| C6 |
C3 |
C7 |
C5 |
0.1 |
0.2 |
| C6 |
C3 |
C7 |
H3 |
180.0 |
180.2 |
| C3 |
C7 |
C5 |
C10 |
180.6 |
180.1 |
| C6 |
C3 |
H3 |
C7 |
180.0 |
179.8 |
| H3 |
C3 |
C7 |
C5 |
180.1 |
180.0 |
| C9 |
C4 |
C8 |
H4 |
180.0 |
180.2 |
| C8 |
C4 |
C9 |
H4 |
180.0 |
179.8 |
| C7 |
C5 |
C1 |
H1 |
180.0 |
180.0 |
| C5 |
C7 |
C3 |
H3 |
180.1 |
180.0 |
| C7 |
C5 |
C10 |
N28 |
179.7 |
180.0 |
| C10 |
C5 |
C1 |
H1 |
359.3 |
360.0 |
| N25 |
C10 |
C5 |
N28 |
180.4 |
180.0 |
| C5 |
C10 |
N28 |
HN28 |
180.0 |
359.9 |
| C5 |
C10 |
N28 |
HN2A |
300.0 |
180.0 |
| C8 |
C6 |
C2 |
H2 |
0.4 |
359.7 |
| C8 |
C6 |
C3 |
H3 |
359.7 |
0.3 |
| C6 |
C8 |
C4 |
H4 |
2.2 |
0.0 |
| N26 |
C7 |
C3 |
H3 |
0.5 |
359.9 |
| N23 |
C8 |
C4 |
H4 |
179.5 |
180.0 |
| N24 |
C9 |
C4 |
H4 |
181.2 |
180.0 |
| N24 |
C9 |
N27 |
C15 |
336.1 |
123.9 |
| N24 |
C9 |
N27 |
C17 |
187.7 |
359.7 |
| N27 |
C9 |
C4 |
H4 |
357.7 |
359.9 |
| C16 |
C15 |
N27 |
C9 |
136.4 |
174.2 |
| C9 |
N27 |
C15 |
H15 |
256.4 |
54.2 |
| C9 |
N27 |
C15 |
H15A |
16.4 |
294.1 |
| C15 |
N27 |
C9 |
C17 |
148.4 |
124.2 |
| C9 |
N27 |
C17 |
H17 |
342.8 |
305.9 |
| C5 |
C10 |
N25 |
N28 |
179.6 |
180.0 |
| N25 |
C10 |
N28 |
HN28 |
359.5 |
179.9 |
| N25 |
C10 |
N28 |
HN2A |
119.5 |
360.0 |
| HN28 |
N28 |
C10 |
HN2A |
240.0 |
179.9 |
| C11 |
N24 |
C9 |
N27 |
182.1 |
180.1 |
| C14 |
C13 |
C16 |
H13 |
240.0 |
119.9 |
| C14 |
C13 |
C16 |
H13A |
120.0 |
240.1 |
| C16 |
C13 |
C14 |
H14 |
176.1 |
177.6 |
| C16 |
C13 |
C14 |
H14A |
296.1 |
297.6 |
| H13 |
C13 |
C16 |
H13A |
240.0 |
120.2 |
| C16 |
C13 |
C14 |
H13 |
120.0 |
240.1 |
| C16 |
C13 |
C14 |
H13A |
240.0 |
119.9 |
| H13 |
C13 |
C14 |
H13A |
120.0 |
239.8 |
| C17 |
C14 |
C13 |
H14 |
240.0 |
240.1 |
| C17 |
C14 |
C13 |
H14A |
120.0 |
120.0 |
| H14 |
C14 |
C13 |
H14A |
240.0 |
240.0 |
| C16 |
C13 |
H13 |
H13A |
119.5 |
239.8 |
| C14 |
C13 |
H13 |
H13A |
240.5 |
120.1 |
| H13 |
C13 |
C14 |
H14 |
56.1 |
297.5 |
| H13 |
C13 |
C14 |
H14A |
176.1 |
57.5 |
| C16 |
C13 |
H13A |
H13 |
240.6 |
120.2 |
| C14 |
C13 |
H13A |
H13 |
119.5 |
239.8 |
| H13A |
C13 |
C14 |
H14 |
296.1 |
57.7 |
| H13A |
C13 |
C14 |
H14A |
56.1 |
177.7 |
| C9 |
N27 |
C17 |
C14 |
219.0 |
185.9 |
| C17 |
C14 |
C13 |
H13 |
296.1 |
177.5 |
| C17 |
C14 |
C13 |
H13A |
176.1 |
297.7 |
| C13 |
C14 |
C17 |
H14 |
120.0 |
119.9 |
| C13 |
C14 |
C17 |
H14A |
240.0 |
240.0 |
| H14 |
C14 |
C17 |
H14A |
120.0 |
120.1 |
| H14 |
C14 |
C13 |
H13 |
56.1 |
297.5 |
| H14 |
C14 |
C13 |
H13A |
296.1 |
57.7 |
| C13 |
C14 |
H14 |
H14A |
119.5 |
120.1 |
| C17 |
C14 |
H14 |
H14A |
240.6 |
239.8 |
| H14A |
C14 |
C13 |
H13 |
176.1 |
57.5 |
| H14A |
C14 |
C13 |
H13A |
56.1 |
177.7 |
| C13 |
C14 |
H14A |
H14 |
240.5 |
240.0 |
| C17 |
C14 |
H14A |
H14 |
119.5 |
120.1 |
| C9 |
N27 |
C15 |
C17 |
211.6 |
235.9 |
| C16 |
C15 |
N27 |
H15 |
240.0 |
119.9 |
| C16 |
C15 |
N27 |
H15A |
120.0 |
240.0 |
| N27 |
C15 |
C16 |
H16 |
302.8 |
299.3 |
| H15 |
C15 |
N27 |
H15A |
240.0 |
120.1 |
| C15 |
N27 |
C17 |
H17 |
194.0 |
181.8 |
| C9 |
N27 |
C15 |
C16 |
136.4 |
174.2 |
| C15 |
C16 |
C13 |
H13 |
59.3 |
182.5 |
| C15 |
C16 |
C13 |
H13A |
179.3 |
62.2 |
| N27 |
C15 |
C16 |
H15 |
120.0 |
240.0 |
| N27 |
C15 |
C16 |
H15A |
240.0 |
120.0 |
| C16 |
C15 |
N27 |
C17 |
284.8 |
298.3 |
| H15 |
C15 |
C16 |
H15A |
120.0 |
240.0 |
| N30 |
C16 |
C15 |
H16 |
243.9 |
239.9 |
| C16 |
C15 |
H15 |
N27 |
112.1 |
240.0 |
| N27 |
C15 |
H15 |
H15A |
123.9 |
240.0 |
| H15 |
C15 |
N27 |
C17 |
44.8 |
178.3 |
| C16 |
C15 |
H15 |
H15A |
236.1 |
120.0 |
| H15 |
C15 |
C16 |
H16 |
182.8 |
59.2 |
| C16 |
C15 |
H15A |
N27 |
247.8 |
120.0 |
| N27 |
C15 |
H15A |
H15 |
236.1 |
120.0 |
| H15A |
C15 |
N27 |
C17 |
164.7 |
58.2 |
| C16 |
C15 |
H15A |
H15 |
123.9 |
240.0 |
| H15A |
C15 |
C16 |
H16 |
62.8 |
179.3 |
| C16 |
N30 |
C12 |
O31 |
3.5 |
360.0 |
| N30 |
C16 |
C13 |
H13 |
294.2 |
62.5 |
| N30 |
C16 |
C13 |
H13A |
54.1 |
302.3 |
| N30 |
C16 |
C15 |
H15 |
66.6 |
299.1 |
| N30 |
C16 |
C15 |
H15A |
306.7 |
59.1 |
| C15 |
C16 |
N30 |
H16 |
118.1 |
120.2 |
| H16 |
C16 |
C13 |
H13 |
177.9 |
302.5 |
| H16 |
C16 |
C13 |
H13A |
297.8 |
182.2 |
| H16 |
C16 |
C15 |
N27 |
302.8 |
299.3 |
| H16 |
C16 |
C15 |
H15 |
182.8 |
59.2 |
| H16 |
C16 |
C15 |
H15A |
62.8 |
179.3 |
| C9 |
N27 |
C17 |
C18 |
102.0 |
65.8 |
| C18 |
C17 |
C14 |
H14 |
304.1 |
300.9 |
| C18 |
C17 |
C14 |
H14A |
184.1 |
180.8 |
| C15 |
N27 |
C17 |
C18 |
313.2 |
301.7 |
| N27 |
C17 |
C18 |
H17 |
236.6 |
240.1 |
| C9 |
N27 |
C17 |
C15 |
148.8 |
124.1 |
| N27 |
C17 |
C14 |
H14 |
185.8 |
180.9 |
| N27 |
C17 |
C14 |
H14A |
65.8 |
60.8 |
| C17 |
N27 |
C15 |
H15 |
44.8 |
178.3 |
| C17 |
N27 |
C15 |
H15A |
164.7 |
58.2 |
| C18 |
C17 |
N27 |
H17 |
119.1 |
119.9 |
| H17 |
C17 |
C14 |
H14 |
63.1 |
60.9 |
| H17 |
C17 |
C14 |
H14A |
303.1 |
300.8 |
| H18 |
C18 |
C17 |
H17 |
55.6 |
300.0 |
| H18A |
C18 |
H18 |
H18B |
120.0 |
120.1 |
| H18A |
C18 |
C17 |
H17 |
175.6 |
60.0 |
| H18 |
C18 |
H18A |
H18B |
240.0 |
239.9 |
| H18B |
C18 |
C17 |
H17 |
295.6 |
180.0 |
| H18 |
C18 |
H18B |
H18A |
120.0 |
120.1 |
| H19 |
C19 |
C22 |
H19A |
240.0 |
240.0 |
| H19 |
C19 |
C22 |
H19B |
120.0 |
120.0 |
| H19A |
C19 |
C22 |
H19B |
240.0 |
240.0 |
| C22 |
C19 |
H19 |
H19A |
120.0 |
120.0 |
| C22 |
C19 |
H19 |
H19B |
240.0 |
240.0 |
| H19A |
C19 |
H19 |
H19B |
120.0 |
120.0 |
| C22 |
C19 |
H19A |
H19 |
240.0 |
240.0 |
| C22 |
C19 |
H19A |
H19B |
120.0 |
120.0 |
| H19 |
C19 |
H19A |
H19B |
240.0 |
240.0 |
| C22 |
C19 |
H19B |
H19 |
120.0 |
120.0 |
| C22 |
C19 |
H19B |
H19A |
240.0 |
240.0 |
| H19 |
C19 |
H19B |
H19A |
120.0 |
120.0 |
| C20 |
C22 |
C19 |
H19 |
180.0 |
60.0 |
| C20 |
C22 |
C19 |
H19A |
300.0 |
180.0 |
| C20 |
C22 |
C19 |
H19B |
60.0 |
300.0 |
| H20 |
C20 |
C22 |
H20A |
240.0 |
240.0 |
| H20 |
C20 |
C22 |
H20B |
120.0 |
120.0 |
| H20A |
C20 |
C22 |
H20B |
240.0 |
240.0 |
| C20 |
C22 |
C21 |
H21 |
59.4 |
60.0 |
| C20 |
C22 |
C21 |
H21A |
179.4 |
180.0 |
| C20 |
C22 |
C21 |
H21B |
299.4 |
300.0 |
| C22 |
C20 |
H20 |
H20A |
120.0 |
119.9 |
| C22 |
C20 |
H20 |
H20B |
240.0 |
240.0 |
| H20 |
C20 |
C22 |
C21 |
302.2 |
60.0 |
| H20A |
C20 |
H20 |
H20B |
120.0 |
120.1 |
| C22 |
C20 |
H20A |
H20 |
240.0 |
240.1 |
| C22 |
C20 |
H20A |
H20B |
120.0 |
120.0 |
| H20A |
C20 |
C22 |
C21 |
62.2 |
180.0 |
| H20 |
C20 |
H20A |
H20B |
240.0 |
239.9 |
| C22 |
C20 |
H20B |
H20 |
120.0 |
119.9 |
| C22 |
C20 |
H20B |
H20A |
240.0 |
240.0 |
| H20B |
C20 |
C22 |
C21 |
182.2 |
300.0 |
| H20 |
C20 |
H20B |
H20A |
120.0 |
120.1 |
| C21 |
C22 |
C19 |
H19 |
59.7 |
180.0 |
| C21 |
C22 |
C19 |
H19A |
179.7 |
300.0 |
| C21 |
C22 |
C19 |
H19B |
299.7 |
59.9 |
| C21 |
C22 |
C20 |
H20 |
302.2 |
60.0 |
| C21 |
C22 |
C20 |
H20A |
62.2 |
180.0 |
| C21 |
C22 |
C20 |
H20B |
182.2 |
300.0 |
| H21 |
C21 |
C22 |
H21A |
240.0 |
240.0 |
| H21 |
C21 |
C22 |
H21B |
120.0 |
120.0 |
| H21A |
C21 |
C22 |
H21B |
240.0 |
240.0 |
| C22 |
C21 |
H21 |
H21A |
120.0 |
120.0 |
| C22 |
C21 |
H21 |
H21B |
240.0 |
240.0 |
| H21A |
C21 |
H21 |
H21B |
120.0 |
120.0 |
| C22 |
C21 |
H21A |
H21 |
240.0 |
240.0 |
| C22 |
C21 |
H21A |
H21B |
120.0 |
120.0 |
| H21 |
C21 |
H21A |
H21B |
240.0 |
240.0 |
| C22 |
C21 |
H21B |
H21 |
120.0 |
120.0 |
| C22 |
C21 |
H21B |
H21A |
240.0 |
240.0 |
| H21 |
C21 |
H21B |
H21A |
120.0 |
120.0 |
| O32 |
C22 |
C19 |
H19 |
296.9 |
300.0 |
| O32 |
C22 |
C19 |
H19A |
56.9 |
60.0 |
| O32 |
C22 |
C19 |
H19B |
176.9 |
180.0 |
| O32 |
C22 |
C20 |
H20 |
60.7 |
300.0 |
| O32 |
C22 |
C20 |
H20A |
180.7 |
60.0 |
| O32 |
C22 |
C20 |
H20B |
300.7 |
180.0 |
| O32 |
C22 |
C21 |
H21 |
303.0 |
180.0 |
| O32 |
C22 |
C21 |
H21A |
63.0 |
300.0 |
| O32 |
C22 |
C21 |
H21B |
183.0 |
60.0 |
| N26 |
N25 |
C10 |
N28 |
180.1 |
179.8 |
| C10 |
N28 |
HN28 |
HN2A |
120.0 |
180.1 |
| C10 |
N28 |
HN2A |
HN28 |
240.0 |
179.9 |
| HN30 |
N30 |
C12 |
O31 |
183.6 |
180.0 |
| HN30 |
N30 |
C16 |
H16 |
165.9 |
214.8 |
| HN25 |
N25 |
C10 |
N28 |
0.1 |
0.1 |