PDB Chemical Component 3PZ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 3PZ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N2 |
C1 |
1.332 |
1.397 |
| C1 |
C2 |
1.387 |
1.384 |
| C1 |
C6 |
1.410 |
1.406 |
| C8 |
N1 |
1.478 |
1.452 |
| C7 |
N1 |
1.508 |
1.465 |
| N1 |
S1 |
1.686 |
1.656 |
| S1 |
O1 |
1.492 |
1.421 |
| O2 |
S1 |
1.492 |
1.421 |
| S1 |
C25 |
1.737 |
1.762 |
| C7 |
C2 |
1.537 |
1.504 |
| C2 |
C3 |
1.392 |
1.381 |
| C9 |
N2 |
1.467 |
1.463 |
| N2 |
C10 |
1.469 |
1.469 |
| C3 |
C4 |
1.396 |
1.396 |
| C3 |
H3 |
1.080 |
1.080 |
| N3 |
C13 |
1.336 |
1.305 |
| N3 |
C12 |
1.337 |
1.341 |
| C22 |
O3 |
1.362 |
1.358 |
| C28 |
O3 |
1.445 |
1.429 |
| C5 |
C4 |
1.395 |
1.398 |
| C4 |
C29 |
1.436 |
1.431 |
| C13 |
N4 |
1.320 |
1.351 |
| N4 |
C11 |
1.336 |
1.369 |
| N4 |
C14 |
1.506 |
1.465 |
| C6 |
C5 |
1.405 |
1.371 |
| C5 |
H5 |
1.080 |
1.080 |
| C29 |
N5 |
1.139 |
1.136 |
| C6 |
H6 |
1.080 |
1.081 |
| C7 |
H7 |
1.100 |
1.090 |
| C7 |
H7A |
1.100 |
1.090 |
| C15 |
C8 |
1.544 |
1.530 |
| C9 |
C8 |
1.536 |
1.542 |
| C8 |
H8 |
1.100 |
1.090 |
| C9 |
H9 |
1.100 |
1.091 |
| C9 |
H9A |
1.100 |
1.090 |
| C11 |
C10 |
1.525 |
1.507 |
| C10 |
H10 |
1.100 |
1.090 |
| C10 |
H10A |
1.100 |
1.089 |
| C12 |
C11 |
1.338 |
1.348 |
| C12 |
H12 |
1.080 |
1.080 |
| C13 |
H13 |
1.081 |
1.079 |
| C14 |
H14 |
1.100 |
1.089 |
| C14 |
H14A |
1.100 |
1.090 |
| C14 |
H14B |
1.100 |
1.090 |
| C19 |
C15 |
1.537 |
1.506 |
| C15 |
H15 |
1.100 |
1.090 |
| C15 |
H15A |
1.100 |
1.090 |
| C21 |
C16 |
1.392 |
1.382 |
| C16 |
C17 |
1.395 |
1.383 |
| C16 |
H16 |
1.080 |
1.080 |
| C17 |
C18 |
1.394 |
1.382 |
| C17 |
H17 |
1.080 |
1.080 |
| C19 |
C18 |
1.396 |
1.382 |
| C18 |
H18 |
1.080 |
1.080 |
| C20 |
C19 |
1.391 |
1.383 |
| C21 |
C20 |
1.395 |
1.382 |
| C20 |
H20 |
1.080 |
1.080 |
| C21 |
H21 |
1.080 |
1.080 |
| C27 |
C22 |
1.392 |
1.387 |
| C23 |
C22 |
1.392 |
1.388 |
| C24 |
C23 |
1.386 |
1.381 |
| C23 |
H23 |
1.080 |
1.080 |
| C25 |
C24 |
1.390 |
1.383 |
| C24 |
H24 |
1.080 |
1.080 |
| C25 |
C26 |
1.395 |
1.382 |
| C26 |
C27 |
1.394 |
1.382 |
| C26 |
H26 |
1.081 |
1.080 |
| C27 |
H27 |
1.080 |
1.080 |
| C28 |
H28 |
1.101 |
1.090 |
| C28 |
H28A |
1.101 |
1.090 |
| C28 |
H28B |
1.100 |
1.090 |
Bond Angles for 3PZ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N2 |
C1 |
C6 |
117.8 |
115.0 |
| C2 |
C1 |
C6 |
119.6 |
118.6 |
| C1 |
C2 |
C3 |
120.4 |
120.7 |
| C1 |
C6 |
C5 |
119.7 |
121.1 |
| C1 |
C6 |
H6 |
120.1 |
119.4 |
| N1 |
S1 |
O1 |
105.9 |
106.4 |
| N1 |
S1 |
C25 |
114.0 |
107.2 |
| O2 |
S1 |
C25 |
108.2 |
106.4 |
| S1 |
C25 |
C24 |
118.6 |
119.9 |
| S1 |
C25 |
C26 |
120.7 |
120.0 |
| C2 |
C3 |
C4 |
120.6 |
120.4 |
| C2 |
C3 |
H3 |
119.7 |
119.8 |
| C9 |
N2 |
C10 |
116.5 |
111.1 |
| N2 |
C10 |
H10 |
109.2 |
109.5 |
| N2 |
C10 |
H10A |
109.2 |
109.5 |
| C4 |
C3 |
H3 |
119.7 |
119.8 |
| C3 |
C4 |
C29 |
118.5 |
120.4 |
| C12 |
N3 |
C13 |
107.5 |
109.3 |
| N3 |
C13 |
N4 |
107.8 |
108.7 |
| N3 |
C13 |
H13 |
126.1 |
125.7 |
| N3 |
C12 |
C11 |
108.8 |
108.0 |
| N3 |
C12 |
H12 |
125.6 |
126.0 |
| C5 |
C4 |
C29 |
121.9 |
120.4 |
| C4 |
C29 |
N5 |
178.0 |
180.0 |
| C13 |
N4 |
C14 |
124.2 |
126.4 |
| C11 |
N4 |
C14 |
126.2 |
126.4 |
| N4 |
C11 |
C10 |
126.4 |
126.6 |
| N4 |
C14 |
H14 |
109.5 |
109.4 |
| N4 |
C14 |
H14A |
109.5 |
109.5 |
| N4 |
C14 |
H14B |
109.5 |
109.5 |
| C6 |
C5 |
H5 |
119.9 |
120.0 |
| H7 |
C7 |
H7A |
111.8 |
109.4 |
| C15 |
C8 |
H8 |
109.1 |
109.8 |
| C9 |
C8 |
H8 |
106.0 |
109.8 |
| H9 |
C9 |
H9A |
110.1 |
109.6 |
| C11 |
C10 |
H10 |
109.2 |
109.5 |
| C11 |
C10 |
H10A |
109.3 |
109.5 |
| H10 |
C10 |
H10A |
109.7 |
109.5 |
| H14 |
C14 |
H14A |
109.5 |
109.5 |
| H14 |
C14 |
H14B |
109.4 |
109.5 |
| H14A |
C14 |
H14B |
109.5 |
109.5 |
| C19 |
C15 |
H15 |
108.2 |
109.5 |
| C19 |
C15 |
H15A |
108.2 |
109.5 |
| H15 |
C15 |
H15A |
110.7 |
109.4 |
| C21 |
C16 |
H16 |
120.2 |
120.0 |
| C17 |
C16 |
H16 |
120.2 |
120.0 |
| C16 |
C17 |
C18 |
120.2 |
120.0 |
| C16 |
C17 |
H17 |
119.9 |
120.0 |
| C18 |
C17 |
H17 |
119.9 |
120.0 |
| C17 |
C18 |
H18 |
120.0 |
120.0 |
| C19 |
C18 |
H18 |
119.9 |
120.0 |
| C21 |
C20 |
H20 |
119.9 |
120.0 |
| C24 |
C23 |
H23 |
119.8 |
120.0 |
| C25 |
C24 |
H24 |
120.3 |
119.9 |
| C25 |
C26 |
C27 |
119.5 |
120.1 |
| C25 |
C26 |
H26 |
120.3 |
120.0 |
| C27 |
C26 |
H26 |
120.3 |
120.0 |
| C26 |
C27 |
H27 |
120.1 |
120.0 |
| H28 |
C28 |
H28A |
109.4 |
109.4 |
| H28 |
C28 |
H28B |
109.5 |
109.4 |
| H28A |
C28 |
H28B |
109.5 |
109.5 |
Torsion Angles for 3PZ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
N2 |
C6 |
183.0 |
177.6 |
| N2 |
C1 |
C2 |
C3 |
177.3 |
184.9 |
| N2 |
C1 |
C6 |
C5 |
182.2 |
176.2 |
| N2 |
C1 |
C6 |
H6 |
2.1 |
356.2 |
| N2 |
C1 |
C2 |
C6 |
177.0 |
182.4 |
| C2 |
C1 |
C6 |
C5 |
359.3 |
358.4 |
| C2 |
C1 |
C6 |
H6 |
179.3 |
178.3 |
| C1 |
C2 |
C3 |
C4 |
0.1 |
358.4 |
| C1 |
C2 |
C3 |
H3 |
180.1 |
178.3 |
| C6 |
C1 |
C2 |
C3 |
0.4 |
2.4 |
| C1 |
C6 |
C5 |
H5 |
180.7 |
180.0 |
| C8 |
N1 |
S1 |
C25 |
287.3 |
270.0 |
| C7 |
N1 |
S1 |
C25 |
66.2 |
90.0 |
| O2 |
S1 |
N1 |
C25 |
121.7 |
246.5 |
| N1 |
S1 |
C25 |
C24 |
270.0 |
90.0 |
| N1 |
S1 |
C25 |
C26 |
90.6 |
270.0 |
| N1 |
S1 |
O1 |
C25 |
122.7 |
245.9 |
| N1 |
S1 |
O2 |
C25 |
234.9 |
114.1 |
| O2 |
S1 |
C25 |
C24 |
147.3 |
203.5 |
| O2 |
S1 |
C25 |
C26 |
327.8 |
23.5 |
| N1 |
S1 |
C25 |
O1 |
242.3 |
113.6 |
| S1 |
C25 |
C24 |
H24 |
359.7 |
0.0 |
| S1 |
C25 |
C26 |
C27 |
180.3 |
179.7 |
| S1 |
C25 |
C26 |
H26 |
0.3 |
360.0 |
| C7 |
C2 |
C3 |
H3 |
360.0 |
356.4 |
| C3 |
C2 |
C1 |
C6 |
0.4 |
2.4 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
180.0 |
| C2 |
C3 |
C4 |
C29 |
179.6 |
179.9 |
| C9 |
N2 |
C10 |
H10 |
36.5 |
173.3 |
| C9 |
N2 |
C10 |
H10A |
156.5 |
293.4 |
| C10 |
N2 |
C1 |
C6 |
333.4 |
23.3 |
| N4 |
C11 |
C10 |
N2 |
174.5 |
272.7 |
| C11 |
C10 |
N2 |
H10 |
240.0 |
240.0 |
| C11 |
C10 |
N2 |
H10A |
120.0 |
120.0 |
| H10 |
C10 |
N2 |
H10A |
240.0 |
239.9 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
180.0 |
| C5 |
C4 |
C3 |
C29 |
180.2 |
180.1 |
| C3 |
C4 |
C29 |
N5 |
353.8 |
11.4 |
| C2 |
C3 |
H3 |
C4 |
180.0 |
180.0 |
| H3 |
C3 |
C4 |
C29 |
359.6 |
359.9 |
| C13 |
N3 |
C12 |
C11 |
359.5 |
359.9 |
| C13 |
N3 |
C12 |
H12 |
179.5 |
180.0 |
| N3 |
C13 |
N4 |
C14 |
180.0 |
180.0 |
| C12 |
N3 |
C13 |
N4 |
0.1 |
0.1 |
| C12 |
N3 |
C13 |
H13 |
180.1 |
180.0 |
| C1 |
C6 |
C5 |
C4 |
0.7 |
0.0 |
| C5 |
C4 |
C3 |
H3 |
179.8 |
180.0 |
| C3 |
C4 |
C5 |
C29 |
179.8 |
179.9 |
| C5 |
C4 |
C29 |
N5 |
173.6 |
191.3 |
| C29 |
C4 |
C3 |
H3 |
359.6 |
359.9 |
| N3 |
C13 |
N4 |
H13 |
180.0 |
179.9 |
| C11 |
N4 |
C13 |
C14 |
180.3 |
179.9 |
| C13 |
N4 |
C14 |
H14 |
180.0 |
275.7 |
| C13 |
N4 |
C14 |
H14A |
300.0 |
35.6 |
| C13 |
N4 |
C14 |
H14B |
60.0 |
155.6 |
| N3 |
C13 |
N4 |
C11 |
0.3 |
359.9 |
| N3 |
C12 |
C11 |
N4 |
0.7 |
0.0 |
| C13 |
N4 |
C11 |
C14 |
179.7 |
180.1 |
| C11 |
N4 |
C14 |
H14 |
359.6 |
95.8 |
| C11 |
N4 |
C14 |
H14A |
119.6 |
215.7 |
| C11 |
N4 |
C14 |
H14B |
239.6 |
335.8 |
| N4 |
C11 |
C10 |
H10 |
54.5 |
152.7 |
| N4 |
C11 |
C10 |
H10A |
294.5 |
32.7 |
| C14 |
N4 |
C11 |
C10 |
359.8 |
359.9 |
| H14 |
C14 |
N4 |
H14A |
240.0 |
240.0 |
| H14 |
C14 |
N4 |
H14B |
120.0 |
120.0 |
| H14A |
C14 |
N4 |
H14B |
240.0 |
240.0 |
| C1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
| C6 |
C5 |
C4 |
C29 |
180.0 |
180.9 |
| H5 |
C5 |
C4 |
C29 |
360.0 |
0.9 |
| C1 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
| H6 |
C6 |
C5 |
H5 |
0.7 |
0.1 |
| C9 |
C8 |
C15 |
H8 |
243.5 |
239.2 |
| C8 |
C9 |
N2 |
C10 |
263.0 |
215.5 |
| C15 |
C8 |
C9 |
H8 |
118.4 |
120.8 |
| H9 |
C9 |
N2 |
C10 |
23.0 |
335.4 |
| H9 |
C9 |
C8 |
H8 |
293.1 |
299.2 |
| H9A |
C9 |
N2 |
C10 |
143.0 |
95.6 |
| H9A |
C9 |
C8 |
H8 |
173.1 |
179.0 |
| N2 |
C10 |
C11 |
H10 |
120.0 |
120.0 |
| N2 |
C10 |
C11 |
H10A |
240.0 |
240.0 |
| N3 |
C12 |
C11 |
C10 |
180.6 |
180.0 |
| C10 |
C11 |
N4 |
C14 |
359.8 |
359.9 |
| H10 |
C10 |
C11 |
H10A |
120.0 |
120.1 |
| N2 |
C10 |
H10 |
H10A |
119.7 |
120.0 |
| C11 |
C10 |
H10 |
H10A |
240.3 |
240.0 |
| N2 |
C10 |
H10A |
H10 |
240.3 |
240.0 |
| C11 |
C10 |
H10A |
H10 |
119.7 |
120.0 |
| C11 |
C12 |
N3 |
C13 |
359.5 |
359.9 |
| N3 |
C12 |
C11 |
H12 |
180.0 |
180.1 |
| C12 |
C11 |
N4 |
C14 |
179.7 |
179.9 |
| C12 |
C11 |
C10 |
H10 |
234.6 |
332.8 |
| C12 |
C11 |
C10 |
H10A |
114.6 |
212.7 |
| H12 |
C12 |
N3 |
C13 |
179.5 |
180.0 |
| N3 |
C12 |
H12 |
C11 |
180.0 |
179.9 |
| N3 |
C13 |
H13 |
N4 |
180.0 |
180.1 |
| H13 |
C13 |
N4 |
C14 |
360.0 |
0.1 |
| N4 |
C14 |
H14 |
H14A |
120.0 |
120.0 |
| N4 |
C14 |
H14 |
H14B |
240.0 |
240.0 |
| H14A |
C14 |
H14 |
H14B |
120.0 |
120.0 |
| N4 |
C14 |
H14A |
H14 |
240.0 |
240.0 |
| N4 |
C14 |
H14A |
H14B |
120.0 |
120.0 |
| H14 |
C14 |
H14A |
H14B |
240.0 |
240.0 |
| N4 |
C14 |
H14B |
H14 |
120.0 |
120.0 |
| N4 |
C14 |
H14B |
H14A |
240.0 |
240.0 |
| H14 |
C14 |
H14B |
H14A |
120.0 |
120.0 |
| C19 |
C15 |
C8 |
H8 |
183.2 |
304.1 |
| H15 |
C15 |
C19 |
H15A |
120.0 |
120.0 |
| H15 |
C15 |
C8 |
H8 |
303.2 |
64.1 |
| C19 |
C15 |
H15 |
H15A |
241.6 |
239.9 |
| H15A |
C15 |
C8 |
H8 |
63.2 |
184.1 |
| C19 |
C15 |
H15A |
H15 |
118.4 |
120.1 |
| C17 |
C16 |
C21 |
H16 |
180.0 |
179.7 |
| C21 |
C16 |
C17 |
H17 |
179.7 |
180.3 |
| C21 |
C16 |
C17 |
H16 |
180.0 |
180.3 |
| C18 |
C17 |
C16 |
H17 |
180.0 |
180.0 |
| C16 |
C17 |
C18 |
H18 |
179.9 |
179.9 |
| H16 |
C16 |
C17 |
C18 |
179.7 |
180.0 |
| H16 |
C16 |
C17 |
H17 |
359.8 |
359.9 |
| C18 |
C17 |
C16 |
H16 |
179.7 |
180.0 |
| C16 |
C17 |
C18 |
H17 |
180.0 |
180.0 |
| C19 |
C18 |
C17 |
H18 |
180.0 |
180.0 |
| H17 |
C17 |
C16 |
H16 |
359.8 |
359.9 |
| C16 |
C17 |
H17 |
C18 |
180.0 |
180.0 |
| H17 |
C17 |
C18 |
H18 |
359.9 |
360.0 |
| C18 |
C19 |
C15 |
H15 |
315.0 |
330.1 |
| C18 |
C19 |
C15 |
H15A |
195.1 |
210.0 |
| C19 |
C18 |
C17 |
H17 |
179.9 |
180.0 |
| C17 |
C18 |
C19 |
H18 |
180.0 |
180.0 |
| H18 |
C18 |
C17 |
H17 |
359.9 |
360.0 |
| C20 |
C19 |
C15 |
H15 |
134.7 |
150.0 |
| C20 |
C19 |
C15 |
H15A |
14.8 |
29.9 |
| C20 |
C19 |
C18 |
H18 |
180.4 |
180.1 |
| C20 |
C21 |
C16 |
H16 |
180.3 |
179.8 |
| H21 |
C21 |
C16 |
H16 |
0.3 |
0.3 |
| H21 |
C21 |
C20 |
H20 |
359.9 |
359.7 |
| S1 |
C25 |
C24 |
C23 |
179.7 |
180.0 |
| S1 |
C25 |
C24 |
C26 |
180.5 |
180.0 |
| C25 |
C24 |
C23 |
H23 |
180.5 |
180.0 |
| H24 |
C24 |
C23 |
H23 |
0.5 |
0.0 |
| S1 |
C25 |
C26 |
C24 |
179.4 |
180.0 |
| C26 |
C25 |
C24 |
H24 |
179.1 |
180.0 |
| C27 |
C26 |
C25 |
H26 |
180.0 |
179.8 |
| C25 |
C26 |
C27 |
H27 |
179.6 |
180.0 |
| C25 |
C26 |
C27 |
H26 |
180.0 |
180.2 |
| C25 |
C26 |
H26 |
C27 |
180.0 |
179.8 |
| H26 |
C26 |
C27 |
H27 |
359.6 |
359.8 |
| H27 |
C27 |
C26 |
H26 |
359.6 |
359.8 |
| H28A |
C28 |
H28 |
H28B |
120.0 |
120.0 |
| H28 |
C28 |
H28A |
H28B |
240.0 |
240.0 |
| H28 |
C28 |
H28B |
H28A |
120.0 |
120.0 |