PDB Chemical Component 3PU
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 3PU
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CL2 |
C8 |
1.730 |
1.735 |
| C1 |
C2 |
1.367 |
1.377 |
| C1 |
C8 |
1.372 |
1.390 |
| C2 |
C9 |
1.368 |
1.391 |
| C8 |
C5 |
1.385 |
1.368 |
| C9 |
C10 |
1.382 |
1.407 |
| C9 |
O24 |
1.352 |
1.347 |
| C5 |
C10 |
1.395 |
1.397 |
| C10 |
C6 |
1.426 |
1.463 |
| O24 |
C11 |
1.358 |
1.350 |
| C11 |
C6 |
1.381 |
1.358 |
| C11 |
C15 |
1.434 |
1.469 |
| N20 |
C15 |
1.377 |
1.349 |
| N20 |
C7 |
1.450 |
1.465 |
| O21 |
C13 |
1.221 |
1.212 |
| C15 |
O23 |
1.219 |
1.217 |
| C7 |
C16 |
1.517 |
1.530 |
| C13 |
N18 |
1.361 |
1.348 |
| C13 |
C16 |
1.501 |
1.516 |
| N18 |
C14 |
1.367 |
1.338 |
| C16 |
N19 |
1.440 |
1.473 |
| C16 |
C12 |
1.486 |
1.507 |
| C14 |
N19 |
1.363 |
1.346 |
| C14 |
O22 |
1.219 |
1.216 |
| N17 |
C12 |
1.316 |
1.290 |
| N17 |
C3 |
1.372 |
1.318 |
| C12 |
S25 |
1.721 |
1.710 |
| C3 |
C4 |
1.377 |
1.336 |
| S25 |
C4 |
1.719 |
1.762 |
| C7 |
H1 |
1.100 |
1.090 |
| C7 |
H2 |
1.100 |
1.090 |
| C6 |
H3 |
1.080 |
1.080 |
| C1 |
H4 |
1.080 |
1.080 |
| C5 |
H5 |
1.080 |
1.079 |
| C4 |
H6 |
1.080 |
1.080 |
| C3 |
H7 |
1.080 |
1.080 |
| C2 |
H8 |
1.080 |
1.081 |
| N18 |
H9 |
1.000 |
0.970 |
| N19 |
H10 |
1.000 |
0.969 |
| N20 |
H11 |
1.000 |
0.970 |
Bond Angles for 3PU
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C8 |
123.0 |
120.7 |
| C1 |
C2 |
C9 |
113.6 |
119.9 |
| C2 |
C1 |
H4 |
118.5 |
119.7 |
| C1 |
C2 |
H8 |
123.2 |
120.1 |
| C1 |
C8 |
C5 |
122.5 |
120.4 |
| C8 |
C1 |
H4 |
118.5 |
119.6 |
| C2 |
C9 |
C10 |
126.2 |
119.1 |
| C2 |
C9 |
O24 |
121.9 |
133.2 |
| C9 |
C2 |
H8 |
123.2 |
120.0 |
| C8 |
C5 |
C10 |
116.1 |
119.7 |
| C8 |
C5 |
H5 |
122.0 |
120.2 |
| C10 |
C9 |
O24 |
111.9 |
107.6 |
| C5 |
C10 |
C9 |
118.6 |
120.1 |
| C9 |
O24 |
C11 |
107.1 |
110.9 |
| C10 |
C5 |
H5 |
121.9 |
120.2 |
| C10 |
C6 |
H3 |
126.2 |
127.0 |
| C11 |
C6 |
H3 |
126.2 |
127.0 |
| C11 |
C15 |
O23 |
122.5 |
120.0 |
| N20 |
C15 |
O23 |
122.9 |
120.0 |
| N20 |
C7 |
H1 |
109.0 |
109.5 |
| N20 |
C7 |
H2 |
109.0 |
109.5 |
| C7 |
C16 |
C13 |
107.4 |
110.6 |
| C7 |
C16 |
N19 |
112.5 |
110.6 |
| C7 |
C16 |
C12 |
114.6 |
110.5 |
| C16 |
C7 |
H1 |
109.0 |
109.5 |
| C16 |
C7 |
H2 |
109.0 |
109.5 |
| C16 |
C13 |
N18 |
107.6 |
105.7 |
| C13 |
N18 |
C14 |
111.6 |
111.6 |
| C13 |
N18 |
H9 |
124.2 |
124.2 |
| C13 |
C16 |
N19 |
101.0 |
103.6 |
| N18 |
C14 |
N19 |
107.1 |
112.5 |
| N18 |
C14 |
O22 |
125.3 |
123.8 |
| C14 |
N19 |
C16 |
112.3 |
106.6 |
| C16 |
N19 |
H10 |
123.8 |
126.7 |
| C16 |
C12 |
S25 |
120.2 |
124.9 |
| N19 |
C14 |
O22 |
127.7 |
123.7 |
| C14 |
N19 |
H10 |
123.9 |
126.7 |
| N17 |
C12 |
S25 |
115.3 |
110.2 |
| N17 |
C3 |
H7 |
122.1 |
122.7 |
| C3 |
C4 |
H6 |
125.3 |
126.0 |
| S25 |
C4 |
H6 |
125.3 |
126.0 |
| H1 |
C7 |
H2 |
109.5 |
109.5 |
Torsion Angles for 3PU
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CL2 |
C8 |
C1 |
H4 |
359.8 |
360.0 |
| CL2 |
C8 |
C5 |
H5 |
0.2 |
0.0 |
| C2 |
C1 |
C8 |
C5 |
359.9 |
0.0 |
| C8 |
C1 |
C2 |
H4 |
180.0 |
180.0 |
| C1 |
C2 |
C9 |
C10 |
359.7 |
360.0 |
| C1 |
C2 |
C9 |
O24 |
180.1 |
180.2 |
| C9 |
C2 |
C1 |
H8 |
180.0 |
180.0 |
| C8 |
C1 |
C2 |
C9 |
0.2 |
0.0 |
| C2 |
C1 |
C8 |
H4 |
180.0 |
180.0 |
| C8 |
C1 |
C2 |
H8 |
180.2 |
180.0 |
| C1 |
C8 |
C5 |
C10 |
0.1 |
360.0 |
| C1 |
C8 |
C5 |
H5 |
180.1 |
180.0 |
| C9 |
C2 |
C1 |
C8 |
0.2 |
0.0 |
| C9 |
C2 |
C1 |
H4 |
180.2 |
180.0 |
| C1 |
C2 |
C9 |
H8 |
180.0 |
180.0 |
| C10 |
C9 |
C2 |
O24 |
179.6 |
179.8 |
| C5 |
C10 |
C9 |
C2 |
0.3 |
360.0 |
| C2 |
C9 |
O24 |
C11 |
179.9 |
179.8 |
| C5 |
C8 |
C1 |
H4 |
179.9 |
180.0 |
| C8 |
C5 |
C10 |
C9 |
359.9 |
0.0 |
| C10 |
C5 |
C8 |
H5 |
180.0 |
180.0 |
| C2 |
C9 |
C10 |
O24 |
180.3 |
180.2 |
| C10 |
C9 |
C2 |
H8 |
179.7 |
180.0 |
| C10 |
C9 |
O24 |
C11 |
0.2 |
0.0 |
| C9 |
C10 |
C5 |
H5 |
179.8 |
180.0 |
| C9 |
C10 |
C6 |
H3 |
179.9 |
180.0 |
| C2 |
C9 |
O24 |
C10 |
179.7 |
179.8 |
| O24 |
C9 |
C2 |
H8 |
0.1 |
0.3 |
| C5 |
C10 |
C9 |
O24 |
179.9 |
179.8 |
| C2 |
C9 |
C10 |
C5 |
0.3 |
360.0 |
| C8 |
C5 |
C10 |
H5 |
180.0 |
180.0 |
| C5 |
C10 |
C6 |
H3 |
359.9 |
0.0 |
| C11 |
C6 |
C10 |
H3 |
180.0 |
180.3 |
| O24 |
C11 |
C6 |
H3 |
180.2 |
180.0 |
| C10 |
C6 |
C11 |
H3 |
180.0 |
179.7 |
| C9 |
O24 |
C11 |
C15 |
179.8 |
180.1 |
| C15 |
C11 |
C6 |
H3 |
0.1 |
0.1 |
| N20 |
C15 |
C11 |
O23 |
179.1 |
180.0 |
| C11 |
C15 |
N20 |
O23 |
180.9 |
180.0 |
| C15 |
N20 |
C7 |
H1 |
218.9 |
60.0 |
| C15 |
N20 |
C7 |
H2 |
338.4 |
300.0 |
| C16 |
C7 |
N20 |
H1 |
239.7 |
120.0 |
| C16 |
C7 |
N20 |
H2 |
120.3 |
239.9 |
| H1 |
C7 |
N20 |
H2 |
240.6 |
120.0 |
| O21 |
C13 |
N18 |
H9 |
354.3 |
0.3 |
| N20 |
C7 |
C16 |
H1 |
120.3 |
240.0 |
| N20 |
C7 |
C16 |
H2 |
239.7 |
120.0 |
| C7 |
C16 |
C13 |
N18 |
248.5 |
241.5 |
| C13 |
C16 |
C7 |
N19 |
110.3 |
114.2 |
| C14 |
N19 |
C16 |
C7 |
108.7 |
118.5 |
| C7 |
C16 |
N19 |
H10 |
288.7 |
298.5 |
| C7 |
C16 |
C12 |
S25 |
137.8 |
120.0 |
| H1 |
C7 |
C16 |
H2 |
119.5 |
240.0 |
| N18 |
C13 |
C16 |
N19 |
6.5 |
0.0 |
| C13 |
N18 |
C14 |
N19 |
2.1 |
0.0 |
| C13 |
N18 |
C14 |
O22 |
182.1 |
180.0 |
| C7 |
C16 |
C13 |
N19 |
242.0 |
241.5 |
| C7 |
C16 |
C13 |
C12 |
124.8 |
122.8 |
| C13 |
C16 |
C7 |
H1 |
298.2 |
184.3 |
| C13 |
C16 |
C7 |
H2 |
178.8 |
304.3 |
| C16 |
C13 |
N18 |
C14 |
354.4 |
360.0 |
| C16 |
C13 |
N18 |
H9 |
174.3 |
180.0 |
| C14 |
N19 |
C16 |
C13 |
354.5 |
0.0 |
| C13 |
C16 |
N19 |
H10 |
174.5 |
180.1 |
| C13 |
C16 |
C12 |
S25 |
258.2 |
242.8 |
| C13 |
N18 |
C14 |
H9 |
180.0 |
180.1 |
| N18 |
C14 |
N19 |
C16 |
2.5 |
360.0 |
| N19 |
C14 |
N18 |
O22 |
180.1 |
180.1 |
| N18 |
C14 |
N19 |
H10 |
182.5 |
179.9 |
| C7 |
C16 |
N19 |
C13 |
114.2 |
118.5 |
| C7 |
C16 |
N19 |
C12 |
229.8 |
237.1 |
| N19 |
C16 |
C7 |
H1 |
188.0 |
70.1 |
| N19 |
C16 |
C7 |
H2 |
68.5 |
190.1 |
| N19 |
C16 |
C13 |
N18 |
6.5 |
0.0 |
| N19 |
C16 |
C12 |
S25 |
8.8 |
357.0 |
| C16 |
N19 |
C14 |
O22 |
182.6 |
180.0 |
| C14 |
N19 |
C16 |
H10 |
180.0 |
180.0 |
| C7 |
C16 |
C12 |
C13 |
239.6 |
237.2 |
| C7 |
C16 |
C12 |
N19 |
129.0 |
123.0 |
| C12 |
C16 |
C7 |
H1 |
59.6 |
307.1 |
| C12 |
C16 |
C7 |
H2 |
300.1 |
67.1 |
| N17 |
C12 |
C16 |
S25 |
179.6 |
179.8 |
| C7 |
C16 |
N19 |
C14 |
108.7 |
118.5 |
| C13 |
C16 |
N19 |
C14 |
354.5 |
0.0 |
| N18 |
C14 |
N19 |
O22 |
179.9 |
179.9 |
| C16 |
N19 |
C14 |
H10 |
180.0 |
180.0 |
| N18 |
C14 |
O22 |
N19 |
180.1 |
180.1 |
| O22 |
C14 |
N19 |
C16 |
182.6 |
180.0 |
| O22 |
C14 |
N19 |
H10 |
2.6 |
360.0 |
| C16 |
C12 |
N17 |
S25 |
180.4 |
180.2 |
| C12 |
N17 |
C3 |
H7 |
180.1 |
180.0 |
| N17 |
C3 |
C4 |
H6 |
180.1 |
180.0 |
| C12 |
S25 |
C4 |
H6 |
179.8 |
180.0 |
| S25 |
C4 |
C3 |
H6 |
180.0 |
180.3 |
| C3 |
C4 |
S25 |
H6 |
180.0 |
179.7 |
| N20 |
C7 |
H1 |
H2 |
119.1 |
240.0 |
| H1 |
C7 |
C16 |
C13 |
298.2 |
184.3 |
| H1 |
C7 |
C16 |
N19 |
188.0 |
70.1 |
| H1 |
C7 |
C16 |
C12 |
59.6 |
307.1 |
| C16 |
C7 |
H1 |
H2 |
240.9 |
120.0 |
| N20 |
C7 |
H2 |
H1 |
240.9 |
120.0 |
| H2 |
C7 |
C16 |
C13 |
178.8 |
304.3 |
| H2 |
C7 |
C16 |
N19 |
68.5 |
190.1 |
| H2 |
C7 |
C16 |
C12 |
300.1 |
67.1 |
| C16 |
C7 |
H2 |
H1 |
119.2 |
240.0 |
| C2 |
C1 |
H4 |
C8 |
180.0 |
180.0 |
| H4 |
C1 |
C2 |
C9 |
180.2 |
180.0 |
| H4 |
C1 |
C2 |
H8 |
0.2 |
360.0 |
| H4 |
C1 |
C8 |
C5 |
179.9 |
180.0 |
| C8 |
C5 |
H5 |
C10 |
180.0 |
180.0 |
| H5 |
C5 |
C10 |
C9 |
179.8 |
180.0 |
| H7 |
C3 |
C4 |
H6 |
0.1 |
359.9 |
| H8 |
C2 |
C1 |
C8 |
180.2 |
180.0 |
| C1 |
C2 |
H8 |
C9 |
180.0 |
180.0 |
| H8 |
C2 |
C1 |
H4 |
0.2 |
360.0 |
| H8 |
C2 |
C9 |
C10 |
179.7 |
180.0 |
| H8 |
C2 |
C9 |
O24 |
0.1 |
0.3 |
| C13 |
N18 |
H9 |
C14 |
180.0 |
179.9 |
| H9 |
N18 |
C14 |
N19 |
182.2 |
180.0 |
| H9 |
N18 |
C14 |
O22 |
2.1 |
359.9 |
| C14 |
N19 |
H10 |
C16 |
180.0 |
180.1 |
| H10 |
N19 |
C14 |
O22 |
2.6 |
360.0 |
| H11 |
N20 |
C15 |
O23 |
176.1 |
180.0 |
| H11 |
N20 |
C7 |
H1 |
38.9 |
240.0 |
| H11 |
N20 |
C7 |
H2 |
158.4 |
120.0 |