PDB Chemical Component 3PL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 3PL
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C |
O |
1.225 |
1.207 |
| C |
CA |
1.547 |
1.507 |
| C |
H |
1.103 |
1.079 |
| CA |
CB |
1.565 |
1.529 |
| CA |
HA1 |
1.115 |
1.091 |
| CA |
HA2 |
1.115 |
1.090 |
| CB |
CG |
1.514 |
1.506 |
| CB |
HB1 |
1.115 |
1.089 |
| CB |
HB2 |
1.115 |
1.090 |
| CG |
CD1 |
1.381 |
1.382 |
| CG |
CD2 |
1.377 |
1.382 |
| CD1 |
CE1 |
1.406 |
1.381 |
| CD1 |
HD1 |
1.103 |
1.081 |
| CE1 |
CZ |
1.357 |
1.381 |
| CE1 |
HE1 |
1.103 |
1.080 |
| CZ |
CE2 |
1.359 |
1.382 |
| CZ |
HZ |
1.103 |
1.080 |
| CE2 |
CD2 |
1.406 |
1.382 |
| CE2 |
HE2 |
1.103 |
1.079 |
| CD2 |
HD2 |
1.103 |
1.080 |
Bond Angles for 3PL
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
CA |
120.0 |
120.0 |
| O |
C |
H |
108.6 |
120.0 |
| CA |
C |
H |
131.4 |
120.0 |
| C |
CA |
CB |
119.7 |
109.5 |
| C |
CA |
HA1 |
108.5 |
109.5 |
| C |
CA |
HA2 |
108.5 |
109.5 |
| CB |
CA |
HA1 |
108.5 |
109.5 |
| CB |
CA |
HA2 |
108.5 |
109.4 |
| CA |
CB |
CG |
115.3 |
109.6 |
| CA |
CB |
HB1 |
110.1 |
109.5 |
| CA |
CB |
HB2 |
110.1 |
109.4 |
| HA1 |
CA |
HA2 |
101.5 |
109.4 |
| CG |
CB |
HB1 |
110.1 |
109.5 |
| CG |
CB |
HB2 |
110.1 |
109.5 |
| CB |
CG |
CD1 |
121.2 |
120.1 |
| CB |
CG |
CD2 |
120.5 |
120.0 |
| HB1 |
CB |
HB2 |
100.1 |
109.4 |
| CD1 |
CG |
CD2 |
118.3 |
120.0 |
| CG |
CD1 |
CE1 |
120.6 |
120.0 |
| CG |
CD1 |
HD1 |
118.8 |
119.9 |
| CG |
CD2 |
CE2 |
120.3 |
120.0 |
| CG |
CD2 |
HD2 |
118.8 |
120.0 |
| CE1 |
CD1 |
HD1 |
120.6 |
120.0 |
| CD1 |
CE1 |
CZ |
120.3 |
120.0 |
| CD1 |
CE1 |
HE1 |
121.6 |
120.0 |
| CZ |
CE1 |
HE1 |
118.1 |
120.0 |
| CE1 |
CZ |
CE2 |
119.9 |
120.0 |
| CE1 |
CZ |
HZ |
120.0 |
120.1 |
| CE2 |
CZ |
HZ |
120.2 |
120.0 |
| CZ |
CE2 |
CD2 |
120.6 |
120.0 |
| CZ |
CE2 |
HE2 |
118.0 |
120.0 |
| CD2 |
CE2 |
HE2 |
121.4 |
120.0 |
| CE2 |
CD2 |
HD2 |
120.9 |
120.0 |
Torsion Angles for 3PL
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
C |
O |
H |
180.0 |
180.2 |
| O |
C |
CA |
CB |
335.1 |
120.0 |
| O |
C |
CA |
HA1 |
209.8 |
240.0 |
| O |
C |
CA |
HA2 |
100.3 |
0.0 |
| O |
C |
CA |
H |
180.0 |
179.8 |
| CB |
CA |
C |
HA1 |
125.2 |
240.0 |
| CB |
CA |
C |
HA2 |
234.7 |
120.0 |
| C |
CA |
CB |
CG |
307.3 |
180.0 |
| C |
CA |
CB |
HB1 |
182.0 |
300.1 |
| C |
CA |
CB |
HB2 |
72.6 |
59.9 |
| HA1 |
CA |
C |
HA2 |
109.5 |
240.0 |
| O |
C |
H |
CA |
180.0 |
180.2 |
| H |
C |
CA |
CB |
155.1 |
300.2 |
| H |
C |
CA |
HA1 |
29.8 |
60.2 |
| H |
C |
CA |
HA2 |
280.3 |
180.2 |
| CB |
CA |
C |
H |
155.1 |
300.2 |
| C |
CA |
CB |
HA1 |
234.7 |
120.0 |
| C |
CA |
CB |
HA2 |
125.3 |
239.9 |
| HA1 |
CA |
CB |
HA2 |
250.5 |
119.9 |
| CG |
CB |
CA |
HB1 |
125.3 |
239.9 |
| CG |
CB |
CA |
HB2 |
234.7 |
120.0 |
| CA |
CB |
CG |
CD1 |
269.5 |
269.8 |
| CA |
CB |
CG |
CD2 |
88.9 |
90.0 |
| HB1 |
CB |
CA |
HB2 |
109.5 |
240.1 |
| HA1 |
CA |
C |
H |
29.8 |
60.2 |
| C |
CA |
HA1 |
CB |
131.6 |
239.9 |
| C |
CA |
HA1 |
HA2 |
245.8 |
120.0 |
| CB |
CA |
HA1 |
HA2 |
114.2 |
240.1 |
| HA1 |
CA |
CB |
CG |
72.6 |
59.9 |
| HA1 |
CA |
CB |
HB1 |
307.3 |
180.1 |
| HA1 |
CA |
CB |
HB2 |
197.8 |
299.9 |
| HA2 |
CA |
C |
H |
280.3 |
180.2 |
| C |
CA |
HA2 |
CB |
228.4 |
120.1 |
| C |
CA |
HA2 |
HA1 |
114.2 |
240.0 |
| CB |
CA |
HA2 |
HA1 |
245.8 |
119.9 |
| HA2 |
CA |
CB |
CG |
182.0 |
300.0 |
| HA2 |
CA |
CB |
HB1 |
56.7 |
60.2 |
| HA2 |
CA |
CB |
HB2 |
307.3 |
180.0 |
| CG |
CB |
CA |
HA1 |
72.6 |
59.9 |
| CG |
CB |
CA |
HA2 |
182.0 |
300.0 |
| CA |
CB |
CG |
HB1 |
234.8 |
120.1 |
| CA |
CB |
CG |
HB2 |
125.3 |
240.0 |
| HB1 |
CB |
CG |
HB2 |
250.5 |
119.9 |
| CD1 |
CG |
CB |
CD2 |
180.6 |
179.8 |
| CB |
CG |
CD1 |
CE1 |
179.6 |
179.8 |
| CB |
CG |
CD1 |
HD1 |
359.6 |
0.2 |
| CB |
CG |
CD2 |
CE2 |
180.4 |
180.0 |
| CB |
CG |
CD2 |
HD2 |
0.3 |
360.0 |
| HB1 |
CB |
CA |
HA1 |
307.3 |
180.1 |
| HB1 |
CB |
CA |
HA2 |
56.7 |
60.2 |
| CA |
CB |
HB1 |
CG |
128.2 |
239.9 |
| CA |
CB |
HB1 |
HB2 |
244.1 |
119.9 |
| CG |
CB |
HB1 |
HB2 |
116.0 |
240.0 |
| HB1 |
CB |
CG |
CD1 |
34.8 |
149.7 |
| HB1 |
CB |
CG |
CD2 |
214.1 |
329.9 |
| HB2 |
CB |
CA |
HA1 |
197.8 |
299.9 |
| HB2 |
CB |
CA |
HA2 |
307.3 |
180.0 |
| CA |
CB |
HB2 |
CG |
231.8 |
120.1 |
| CA |
CB |
HB2 |
HB1 |
115.9 |
240.1 |
| CG |
CB |
HB2 |
HB1 |
244.1 |
120.0 |
| HB2 |
CB |
CG |
CD1 |
144.3 |
29.8 |
| HB2 |
CB |
CG |
CD2 |
323.6 |
210.0 |
| CD1 |
CG |
CB |
HB1 |
34.8 |
149.7 |
| CD1 |
CG |
CB |
HB2 |
144.3 |
29.8 |
| CB |
CG |
CD1 |
CD2 |
179.4 |
180.2 |
| CD1 |
CG |
CD2 |
CE2 |
359.7 |
0.3 |
| CD1 |
CG |
CD2 |
HD2 |
179.7 |
180.2 |
| CE1 |
CD1 |
CG |
HD1 |
180.0 |
179.6 |
| CG |
CD1 |
CE1 |
CZ |
359.6 |
0.4 |
| CG |
CD1 |
CE1 |
HE1 |
179.6 |
180.3 |
| CD2 |
CG |
CB |
HB1 |
214.1 |
329.9 |
| CD2 |
CG |
CB |
HB2 |
323.6 |
210.0 |
| CB |
CG |
CD2 |
CD1 |
180.6 |
179.8 |
| CD2 |
CG |
CD1 |
CE1 |
0.2 |
359.6 |
| CD2 |
CG |
CD1 |
HD1 |
180.2 |
180.0 |
| CZ |
CE2 |
CD2 |
CG |
0.6 |
360.0 |
| CG |
CD2 |
CE2 |
HE2 |
180.5 |
179.9 |
| CE2 |
CD2 |
CG |
HD2 |
180.0 |
180.0 |
| CE1 |
CD1 |
CG |
CD2 |
0.2 |
359.6 |
| CG |
CD1 |
CE1 |
HD1 |
180.0 |
180.4 |
| CZ |
CE1 |
CD1 |
HE1 |
180.0 |
180.1 |
| CD1 |
CE1 |
CZ |
CE2 |
0.7 |
359.8 |
| CD1 |
CE1 |
CZ |
HZ |
180.7 |
179.9 |
| HD1 |
CD1 |
CG |
CD2 |
180.2 |
180.0 |
| CG |
CD1 |
HD1 |
CE1 |
180.0 |
179.6 |
| HD1 |
CD1 |
CE1 |
CZ |
179.6 |
180.0 |
| HD1 |
CD1 |
CE1 |
HE1 |
359.6 |
359.9 |
| CZ |
CE1 |
CD1 |
HD1 |
179.6 |
180.0 |
| CD1 |
CE1 |
CZ |
HE1 |
180.0 |
179.9 |
| CE2 |
CZ |
CE1 |
HZ |
180.0 |
179.9 |
| CE1 |
CZ |
CE2 |
CD2 |
359.2 |
0.0 |
| CE1 |
CZ |
CE2 |
HE2 |
179.2 |
180.0 |
| HE1 |
CE1 |
CD1 |
HD1 |
359.6 |
359.9 |
| CD1 |
CE1 |
HE1 |
CZ |
180.0 |
180.1 |
| HE1 |
CE1 |
CZ |
CE2 |
180.7 |
179.9 |
| HE1 |
CE1 |
CZ |
HZ |
0.7 |
0.0 |
| CG |
CD2 |
CE2 |
CZ |
0.6 |
360.0 |
| CE2 |
CZ |
CE1 |
HE1 |
180.7 |
179.9 |
| CE1 |
CZ |
CE2 |
HZ |
180.0 |
180.1 |
| CD2 |
CE2 |
CZ |
HE2 |
180.0 |
180.0 |
| CZ |
CE2 |
CD2 |
HD2 |
180.6 |
180.0 |
| HZ |
CZ |
CE1 |
HE1 |
0.7 |
0.0 |
| CE1 |
CZ |
HZ |
CE2 |
180.0 |
179.9 |
| HZ |
CZ |
CE2 |
CD2 |
179.2 |
179.9 |
| HZ |
CZ |
CE2 |
HE2 |
359.2 |
359.9 |
| CG |
CD2 |
CE2 |
HD2 |
180.0 |
180.0 |
| CD2 |
CE2 |
CZ |
HZ |
179.2 |
179.9 |
| CZ |
CE2 |
CD2 |
HE2 |
180.0 |
180.0 |
| HE2 |
CE2 |
CZ |
HZ |
359.2 |
359.9 |
| CZ |
CE2 |
HE2 |
CD2 |
180.0 |
180.0 |
| HE2 |
CE2 |
CD2 |
HD2 |
0.6 |
360.0 |
| CG |
CD2 |
HD2 |
CE2 |
180.0 |
180.0 |
| HD2 |
CD2 |
CE2 |
HE2 |
0.6 |
360.0 |